PDB Short entry for 4HE2 HEADER HYDROLASE 03-OCT-12 4HE2 TITLE CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE Q32R TITLE 2 MUTANT COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-1,6-BISPHOSPHATASE ISOZYME 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBPASE 2, D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 2; COMPND 5 EC: 3.1.3.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS ALLOSTERIC ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SHI,D.W.ZHU,S.X.LIN REVDAT 3 20-SEP-23 4HE2 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4HE2 1 REMARK REVDAT 1 09-OCT-13 4HE2 0 JRNL AUTH R.SHI,Z.Y.CHEN,D.W.ZHU,C.LI,Y.SHAN,G.XU,S.X.LIN JRNL TITL CRYSTAL STRUCTURES OF HUMAN MUSCLE JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATASE: NOVEL QUATERNARY STATES, JRNL TITL 3 ENHANCED AMP AFFINITY, AND ALLOSTERIC SIGNAL TRANSMISSION JRNL TITL 4 PATHWAY. JRNL REF PLOS ONE V. 8 71242 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24086250 JRNL DOI 10.1371/JOURNAL.PONE.0071242 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 51784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.639 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2498 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3402 ; 1.266 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;34.907 ;24.787 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;14.076 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1823 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1567 ; 0.587 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2539 ; 1.150 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 931 ; 2.052 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 849 ; 3.410 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1505 -13.1480 -6.1042 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.0544 REMARK 3 T33: 0.0046 T12: -0.0489 REMARK 3 T13: 0.0026 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.8092 L22: 0.4698 REMARK 3 L33: 1.1759 L12: 0.1234 REMARK 3 L13: -0.8269 L23: -0.2455 REMARK 3 S TENSOR REMARK 3 S11: 0.1066 S12: -0.0068 S13: 0.0175 REMARK 3 S21: 0.1122 S22: -0.0537 S23: 0.0330 REMARK 3 S31: -0.0138 S32: -0.0770 S33: -0.0530 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3172 -18.6496 -14.7808 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0283 REMARK 3 T33: 0.0444 T12: -0.0309 REMARK 3 T13: -0.0188 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.2024 L22: 0.7715 REMARK 3 L33: 0.7572 L12: 0.0826 REMARK 3 L13: 0.1019 L23: 0.0600 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: -0.0604 S13: -0.0214 REMARK 3 S21: 0.0593 S22: -0.0180 S23: -0.0219 REMARK 3 S31: 0.0920 S32: -0.0030 S33: -0.0487 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8726 -9.2474 -35.2858 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0316 REMARK 3 T33: 0.0459 T12: 0.0122 REMARK 3 T13: -0.0262 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.1294 L22: 0.7953 REMARK 3 L33: 0.6085 L12: 0.1420 REMARK 3 L13: -0.1461 L23: -0.3077 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.0312 S13: -0.0084 REMARK 3 S21: -0.0930 S22: -0.0339 S23: 0.0366 REMARK 3 S31: 0.0511 S32: -0.0631 S33: -0.0042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4HE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51809 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MGCL2, 15% PEG 4000, 0.1M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.68300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.68300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.31100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.68300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.68300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.31100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.68300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.68300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.31100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.68300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.68300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.31100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 747 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 PHE A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 ASP A 9 REMARK 465 MET A 10 REMARK 465 HIS A 55 REMARK 465 LEU A 56 REMARK 465 TYR A 57 REMARK 465 GLY A 58 REMARK 465 ILE A 59 REMARK 465 ALA A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 VAL A 63 REMARK 465 ASN A 64 REMARK 465 VAL A 65 REMARK 465 THR A 66 REMARK 465 GLY A 67 REMARK 465 ASP A 68 REMARK 465 GLU A 69 REMARK 465 VAL A 70 REMARK 465 LYS A 71 REMARK 465 ALA A 336 REMARK 465 GLY A 337 REMARK 465 SER A 338 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 121 O HOH A 729 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 645 O HOH A 731 2555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 207 19.08 -141.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE1 REMARK 620 2 ASP A 118 OD2 111.0 REMARK 620 3 GLU A 280 OE2 100.6 91.5 REMARK 620 4 PO3 A 402 O2 117.5 93.6 136.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE2 REMARK 620 2 GLU A 97 OE2 18.4 REMARK 620 3 ASP A 118 OD1 82.1 99.6 REMARK 620 4 LEU A 120 O 160.0 153.7 90.3 REMARK 620 5 PO3 A 402 O2 101.9 103.2 103.7 97.9 REMARK 620 6 HOH A 524 O 83.2 78.7 86.2 77.7 169.3 REMARK 620 7 HOH A 561 O 102.5 84.2 166.9 81.3 87.5 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE1 REMARK 620 2 PO3 A 402 O3 81.3 REMARK 620 3 HOH A 561 O 97.3 90.8 REMARK 620 4 HOH A 600 O 90.2 160.5 72.8 REMARK 620 5 HOH A 628 O 172.5 98.1 90.2 92.5 REMARK 620 6 HOH A 757 O 81.1 93.8 174.8 102.2 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 ASP A 121 OD1 111.9 REMARK 620 3 GLU A 280 OE2 85.6 127.0 REMARK 620 4 PO3 A 402 O2 81.1 116.1 115.8 REMARK 620 5 HOH A 740 O 162.9 81.6 77.6 102.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HE0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE REMARK 900 RELATED ID: 4HE1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE Q32R REMARK 900 MUTANT COMPLEX WITH FRUCTOSE-6-PHOSPHATE AND PHOSPHATE DBREF 4HE2 A 1 338 UNP O00757 F16P2_HUMAN 2 339 SEQADV 4HE2 ARG A 32 UNP O00757 GLN 33 ENGINEERED MUTATION SEQADV 4HE2 LEU A 85 UNP O00757 VAL 86 CONFLICT SEQRES 1 A 338 THR ASP ARG SER PRO PHE GLU THR ASP MET LEU THR LEU SEQRES 2 A 338 THR ARG TYR VAL MET GLU LYS GLY ARG GLN ALA LYS GLY SEQRES 3 A 338 THR GLY GLU LEU THR ARG LEU LEU ASN SER MET LEU THR SEQRES 4 A 338 ALA ILE LYS ALA ILE SER SER ALA VAL ARG LYS ALA GLY SEQRES 5 A 338 LEU ALA HIS LEU TYR GLY ILE ALA GLY SER VAL ASN VAL SEQRES 6 A 338 THR GLY ASP GLU VAL LYS LYS LEU ASP VAL LEU SER ASN SEQRES 7 A 338 SER LEU VAL ILE ASN MET LEU GLN SER SER TYR SER THR SEQRES 8 A 338 CYS VAL LEU VAL SER GLU GLU ASN LYS ASP ALA ILE ILE SEQRES 9 A 338 THR ALA LYS GLU LYS ARG GLY LYS TYR VAL VAL CYS PHE SEQRES 10 A 338 ASP PRO LEU ASP GLY SER SER ASN ILE ASP CYS LEU ALA SEQRES 11 A 338 SER ILE GLY THR ILE PHE ALA ILE TYR ARG LYS THR SER SEQRES 12 A 338 GLU ASP GLU PRO SER GLU LYS ASP ALA LEU GLN CYS GLY SEQRES 13 A 338 ARG ASN ILE VAL ALA ALA GLY TYR ALA LEU TYR GLY SER SEQRES 14 A 338 ALA THR LEU VAL ALA LEU SER THR GLY GLN GLY VAL ASP SEQRES 15 A 338 LEU PHE MET LEU ASP PRO ALA LEU GLY GLU PHE VAL LEU SEQRES 16 A 338 VAL GLU LYS ASP VAL LYS ILE LYS LYS LYS GLY LYS ILE SEQRES 17 A 338 TYR SER LEU ASN GLU GLY TYR ALA LYS TYR PHE ASP ALA SEQRES 18 A 338 ALA THR THR GLU TYR VAL GLN LYS LYS LYS PHE PRO GLU SEQRES 19 A 338 ASP GLY SER ALA PRO TYR GLY ALA ARG TYR VAL GLY SER SEQRES 20 A 338 MET VAL ALA ASP VAL HIS ARG THR LEU VAL TYR GLY GLY SEQRES 21 A 338 ILE PHE LEU TYR PRO ALA ASN GLN LYS SER PRO LYS GLY SEQRES 22 A 338 LYS LEU ARG LEU LEU TYR GLU CYS ASN PRO VAL ALA TYR SEQRES 23 A 338 ILE ILE GLU GLN ALA GLY GLY LEU ALA THR THR GLY THR SEQRES 24 A 338 GLN PRO VAL LEU ASP VAL LYS PRO GLU ALA ILE HIS GLN SEQRES 25 A 338 ARG VAL PRO LEU ILE LEU GLY SER PRO GLU ASP VAL GLN SEQRES 26 A 338 GLU TYR LEU THR CYS VAL GLN LYS ASN GLN ALA GLY SER HET AMP A 401 23 HET PO3 A 402 4 HET MG A 403 1 HET ZN A 404 1 HET MG A 405 1 HET MG A 406 1 HET CL A 407 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PO3 PHOSPHITE ION HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 PO3 O3 P 3- FORMUL 4 MG 3(MG 2+) FORMUL 5 ZN ZN 2+ FORMUL 8 CL CL 1- FORMUL 9 HOH *257(H2 O) HELIX 1 1 THR A 12 ALA A 24 1 13 HELIX 2 2 GLY A 28 LYS A 50 1 23 HELIX 3 3 LEU A 73 SER A 87 1 15 HELIX 4 4 ALA A 106 GLU A 108 5 3 HELIX 5 5 GLY A 122 ILE A 126 5 5 HELIX 6 6 SER A 148 LEU A 153 5 6 HELIX 7 7 CYS A 155 ILE A 159 5 5 HELIX 8 8 ASN A 212 PHE A 219 5 8 HELIX 9 9 ASP A 220 PHE A 232 1 13 HELIX 10 10 SER A 247 GLY A 259 1 13 HELIX 11 11 GLU A 280 ALA A 291 1 12 HELIX 12 12 PRO A 301 VAL A 305 5 5 HELIX 13 13 SER A 320 GLN A 335 1 16 SHEET 1 A 8 ILE A 103 ILE A 104 0 SHEET 2 A 8 THR A 91 SER A 96 -1 N LEU A 94 O ILE A 103 SHEET 3 A 8 ARG A 110 ASP A 121 1 O PHE A 117 N VAL A 95 SHEET 4 A 8 ILE A 132 ARG A 140 -1 O GLY A 133 N ASP A 121 SHEET 5 A 8 ALA A 161 TYR A 167 -1 O TYR A 167 N ILE A 132 SHEET 6 A 8 THR A 171 SER A 176 -1 O LEU A 172 N LEU A 166 SHEET 7 A 8 VAL A 181 ASP A 187 -1 O LEU A 186 N THR A 171 SHEET 8 A 8 GLU A 192 VAL A 200 -1 O GLU A 197 N LEU A 183 SHEET 1 B 5 GLY A 241 ALA A 242 0 SHEET 2 B 5 ILE A 208 SER A 210 1 N TYR A 209 O GLY A 241 SHEET 3 B 5 ILE A 261 TYR A 264 1 O LEU A 263 N SER A 210 SHEET 4 B 5 LEU A 316 GLY A 319 -1 O LEU A 316 N TYR A 264 SHEET 5 B 5 LEU A 294 THR A 296 -1 N THR A 296 O ILE A 317 LINK OE1BGLU A 97 ZN ZN A 404 1555 1555 1.95 LINK OE2AGLU A 97 MG MG A 405 1555 1555 2.06 LINK OE2BGLU A 97 MG MG A 405 1555 1555 2.12 LINK OE1AGLU A 97 MG MG A 406 1555 1555 2.33 LINK OD2 ASP A 118 MG MG A 403 1555 1555 2.26 LINK OD2 ASP A 118 ZN ZN A 404 1555 1555 2.10 LINK OD1 ASP A 118 MG MG A 405 1555 1555 2.15 LINK O LEU A 120 MG MG A 405 1555 1555 2.21 LINK OD1 ASP A 121 MG MG A 403 1555 1555 1.94 LINK OE2 GLU A 280 MG MG A 403 1555 1555 2.15 LINK OE2 GLU A 280 ZN ZN A 404 1555 1555 2.09 LINK O2 PO3 A 402 MG MG A 403 1555 1555 2.11 LINK O2 PO3 A 402 ZN ZN A 404 1555 1555 1.80 LINK O2 PO3 A 402 MG MG A 405 1555 1555 1.87 LINK O3 PO3 A 402 MG MG A 406 1555 1555 2.05 LINK MG MG A 403 O HOH A 740 1555 1555 2.52 LINK MG MG A 405 O HOH A 524 1555 1555 2.05 LINK MG MG A 405 O HOH A 561 1555 1555 2.08 LINK MG MG A 406 O HOH A 561 1555 1555 2.44 LINK MG MG A 406 O HOH A 600 1555 1555 2.15 LINK MG MG A 406 O HOH A 628 1555 1555 1.92 LINK MG MG A 406 O HOH A 757 1555 1555 2.17 SITE 1 AC1 19 VAL A 17 LYS A 20 GLY A 21 ALA A 24 SITE 2 AC1 19 THR A 27 GLY A 28 GLU A 29 LEU A 30 SITE 3 AC1 19 THR A 31 LYS A 112 TYR A 113 VAL A 160 SITE 4 AC1 19 THR A 177 HOH A 535 HOH A 594 HOH A 605 SITE 5 AC1 19 HOH A 612 HOH A 663 HOH A 746 SITE 1 AC2 16 GLU A 97 ASP A 118 LEU A 120 ASP A 121 SITE 2 AC2 16 GLY A 122 SER A 123 GLU A 280 MG A 403 SITE 3 AC2 16 ZN A 404 MG A 405 MG A 406 HOH A 561 SITE 4 AC2 16 HOH A 628 HOH A 648 HOH A 740 HOH A 757 SITE 1 AC3 8 GLU A 97 ASP A 118 ASP A 121 GLU A 280 SITE 2 AC3 8 PO3 A 402 ZN A 404 MG A 405 HOH A 740 SITE 1 AC4 7 GLU A 97 ASP A 118 ASP A 121 GLU A 280 SITE 2 AC4 7 PO3 A 402 MG A 403 MG A 405 SITE 1 AC5 9 GLU A 97 ASP A 118 LEU A 120 PO3 A 402 SITE 2 AC5 9 MG A 403 ZN A 404 MG A 406 HOH A 524 SITE 3 AC5 9 HOH A 561 SITE 1 AC6 7 GLU A 97 PO3 A 402 MG A 405 HOH A 561 SITE 2 AC6 7 HOH A 600 HOH A 628 HOH A 757 SITE 1 AC7 1 SER A 131 CRYST1 73.366 73.366 146.622 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013630 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006820 0.00000