PDB Short entry for 4HH3 HEADER FLAVOPROTEIN/TRANSCRIPTION 09-OCT-12 4HH3 TITLE STRUCTURE OF THE APPA-PPSR2 CORE COMPLEX FROM RB. SPHAEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PPSR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-257; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: APPA PROTEIN; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: UNP RESIDUES 168-399; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_COMMON: RHODOPSEUDOMONAS SPHAEROIDES; SOURCE 4 ORGANISM_TAXID: 272943; SOURCE 5 STRAIN: 2.4.1; SOURCE 6 GENE: PPSR, RHOS4_18870, RSP_0282; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM11; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 14 ORGANISM_COMMON: RHODOPSEUDOMONAS SPHAEROIDES; SOURCE 15 ORGANISM_TAXID: 1063; SOURCE 16 STRAIN: 2.4.1; SOURCE 17 GENE: APPA; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS HELIX BUNDLE, SCHIC DOMAIN, PAS DOMAIN, APPA-PPSR COMPLEX, KEYWDS 2 FLAVOPROTEIN-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.WINKLER,U.HEINTZ,R.LINDNER,J.REINSTEIN,R.SHOEMAN,I.SCHLICHTING REVDAT 5 28-FEB-24 4HH3 1 SEQADV REVDAT 4 15-NOV-17 4HH3 1 REMARK REVDAT 3 17-JUL-13 4HH3 1 JRNL REVDAT 2 10-JUL-13 4HH3 1 JRNL REVDAT 1 05-JUN-13 4HH3 0 JRNL AUTH A.WINKLER,U.HEINTZ,R.LINDNER,J.REINSTEIN,R.L.SHOEMAN, JRNL AUTH 2 I.SCHLICHTING JRNL TITL A TERNARY APPA-PPSR-DNA COMPLEX MEDIATES LIGHT REGULATION OF JRNL TITL 2 PHOTOSYNTHESIS-RELATED GENE EXPRESSION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 859 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23728293 JRNL DOI 10.1038/NSMB.2597 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 89590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9213 - 5.4346 1.00 3095 155 0.1808 0.1904 REMARK 3 2 5.4346 - 4.3147 1.00 2925 153 0.1466 0.1614 REMARK 3 3 4.3147 - 3.7696 1.00 2917 154 0.1511 0.1648 REMARK 3 4 3.7696 - 3.4251 1.00 2867 150 0.1559 0.1848 REMARK 3 5 3.4251 - 3.1797 1.00 2909 152 0.1638 0.1801 REMARK 3 6 3.1797 - 2.9923 1.00 2842 147 0.1672 0.1839 REMARK 3 7 2.9923 - 2.8424 1.00 2855 154 0.1713 0.2091 REMARK 3 8 2.8424 - 2.7187 1.00 2805 150 0.1724 0.1873 REMARK 3 9 2.7187 - 2.6141 1.00 2879 147 0.1727 0.2204 REMARK 3 10 2.6141 - 2.5239 1.00 2821 150 0.1763 0.2258 REMARK 3 11 2.5239 - 2.4450 1.00 2839 144 0.1848 0.2230 REMARK 3 12 2.4450 - 2.3751 1.00 2820 153 0.1758 0.1898 REMARK 3 13 2.3751 - 2.3126 1.00 2833 162 0.1694 0.2440 REMARK 3 14 2.3126 - 2.2561 1.00 2800 149 0.1662 0.1872 REMARK 3 15 2.2561 - 2.2048 1.00 2822 149 0.1670 0.2050 REMARK 3 16 2.2048 - 2.1579 1.00 2821 121 0.1677 0.2260 REMARK 3 17 2.1579 - 2.1148 1.00 2847 144 0.1701 0.2044 REMARK 3 18 2.1148 - 2.0749 1.00 2757 163 0.1716 0.2401 REMARK 3 19 2.0749 - 2.0378 1.00 2895 128 0.1757 0.1986 REMARK 3 20 2.0378 - 2.0033 1.00 2756 151 0.1816 0.2306 REMARK 3 21 2.0033 - 1.9709 1.00 2817 167 0.1986 0.2604 REMARK 3 22 1.9709 - 1.9406 1.00 2829 132 0.1968 0.2306 REMARK 3 23 1.9406 - 1.9121 1.00 2782 141 0.1908 0.2188 REMARK 3 24 1.9121 - 1.8851 1.00 2785 169 0.1953 0.2436 REMARK 3 25 1.8851 - 1.8597 1.00 2790 149 0.1939 0.2351 REMARK 3 26 1.8597 - 1.8355 1.00 2822 136 0.2067 0.2354 REMARK 3 27 1.8355 - 1.8126 1.00 2808 159 0.2112 0.2781 REMARK 3 28 1.8126 - 1.7907 1.00 2744 153 0.2239 0.2763 REMARK 3 29 1.7907 - 1.7699 1.00 2843 146 0.2380 0.2599 REMARK 3 30 1.7699 - 1.7500 1.00 2776 161 0.2384 0.2661 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5632 REMARK 3 ANGLE : 1.022 7658 REMARK 3 CHIRALITY : 0.068 912 REMARK 3 PLANARITY : 0.005 1007 REMARK 3 DIHEDRAL : 13.000 2186 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9996 30.3299 17.4896 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.2766 REMARK 3 T33: 0.5052 T12: 0.0639 REMARK 3 T13: 0.2302 T23: 0.1917 REMARK 3 L TENSOR REMARK 3 L11: 3.1724 L22: 2.8413 REMARK 3 L33: 1.6603 L12: -0.3951 REMARK 3 L13: -1.2127 L23: 0.3230 REMARK 3 S TENSOR REMARK 3 S11: 0.2068 S12: 0.5818 S13: 0.1223 REMARK 3 S21: -0.6147 S22: -0.2816 S23: -0.9043 REMARK 3 S31: 0.1612 S32: 0.2116 S33: 0.3165 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7056 74.6173 4.6997 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.1484 REMARK 3 T33: 0.1098 T12: 0.0048 REMARK 3 T13: -0.0109 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3003 L22: 3.2435 REMARK 3 L33: 0.4649 L12: -0.7727 REMARK 3 L13: 0.0274 L23: -0.7549 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0856 S13: -0.0718 REMARK 3 S21: -0.0871 S22: -0.0142 S23: 0.3199 REMARK 3 S31: 0.0578 S32: -0.0219 S33: -0.0166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7519 97.1137 7.6798 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1418 REMARK 3 T33: 0.2302 T12: 0.0324 REMARK 3 T13: 0.0211 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.2536 L22: 5.0457 REMARK 3 L33: 2.9739 L12: -0.5964 REMARK 3 L13: -1.3834 L23: 0.4302 REMARK 3 S TENSOR REMARK 3 S11: -0.1086 S12: -0.2054 S13: -0.2166 REMARK 3 S21: 0.1159 S22: -0.0292 S23: 0.4609 REMARK 3 S31: -0.0138 S32: -0.1649 S33: 0.0728 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9236 25.0600 32.8015 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1386 REMARK 3 T33: 0.2014 T12: -0.0279 REMARK 3 T13: 0.0256 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 4.1389 L22: 1.1849 REMARK 3 L33: 2.4120 L12: -0.3914 REMARK 3 L13: -1.5812 L23: -0.6512 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: -0.1329 S13: -0.1616 REMARK 3 S21: -0.0062 S22: -0.0625 S23: -0.2051 REMARK 3 S31: 0.0750 S32: 0.0637 S33: 0.0349 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9808 70.1241 3.6144 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.2289 REMARK 3 T33: 0.2267 T12: 0.0109 REMARK 3 T13: 0.0405 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.5585 L22: 2.0934 REMARK 3 L33: 1.3956 L12: -1.0106 REMARK 3 L13: 0.8695 L23: -1.2631 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: -0.2405 S13: -0.1544 REMARK 3 S21: 0.1445 S22: 0.1391 S23: 0.2040 REMARK 3 S31: 0.0007 S32: -0.1304 S33: -0.0910 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4273 82.8832 -20.6247 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.2204 REMARK 3 T33: 0.1978 T12: 0.0130 REMARK 3 T13: 0.0100 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 3.2045 L22: 2.0352 REMARK 3 L33: 4.0540 L12: -0.8552 REMARK 3 L13: 1.3777 L23: -0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: 0.4731 S13: 0.2289 REMARK 3 S21: -0.1100 S22: -0.0995 S23: -0.1408 REMARK 3 S31: -0.0002 S32: 0.2868 S33: 0.1444 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 184 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6134 63.6948 21.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.2505 REMARK 3 T33: 0.0600 T12: 0.0222 REMARK 3 T13: 0.0069 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 2.6935 L22: 1.7759 REMARK 3 L33: 1.3152 L12: -0.0934 REMARK 3 L13: -0.2595 L23: -0.1253 REMARK 3 S TENSOR REMARK 3 S11: -0.1406 S12: -0.4680 S13: -0.2277 REMARK 3 S21: 0.2456 S22: 0.0719 S23: 0.0256 REMARK 3 S31: -0.0434 S32: -0.1114 S33: 0.0537 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 264 THROUGH 400) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6287 64.0033 -1.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.2350 T22: 0.2193 REMARK 3 T33: 0.0288 T12: 0.0153 REMARK 3 T13: 0.0157 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.7315 L22: 1.9043 REMARK 3 L33: 2.9388 L12: 0.0190 REMARK 3 L13: -0.8118 L23: -0.2924 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.4227 S13: -0.0294 REMARK 3 S21: -0.3709 S22: -0.0912 S23: -0.2251 REMARK 3 S31: 0.3332 S32: 0.0501 S33: 0.0954 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99981 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.00530 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 64 MM TRI-SODIUM CITRATE, REMARK 280 10% PEG 5000 MONOMETHYL ETHER, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.89000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 94.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 94.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 ALA B 3 REMARK 465 GLY B 4 REMARK 465 ASN B 41 REMARK 465 PRO B 42 REMARK 465 HIS B 43 REMARK 465 HIS B 44 REMARK 465 PRO B 45 REMARK 465 ASP B 92 REMARK 465 PRO B 93 REMARK 465 ARG B 94 REMARK 465 SER B 95 REMARK 465 PHE B 96 REMARK 465 VAL C 168 REMARK 465 GLU C 169 REMARK 465 ALA C 170 REMARK 465 ASP C 171 REMARK 465 THR C 172 REMARK 465 PHE C 173 REMARK 465 ALA C 174 REMARK 465 LEU C 175 REMARK 465 TYR C 176 REMARK 465 ALA C 177 REMARK 465 LEU C 178 REMARK 465 THR C 179 REMARK 465 GLU C 180 REMARK 465 ALA C 181 REMARK 465 GLN C 182 REMARK 465 ALA C 183 REMARK 465 ALA C 401 REMARK 465 HIS C 402 REMARK 465 HIS C 403 REMARK 465 HIS C 404 REMARK 465 HIS C 405 REMARK 465 HIS C 406 REMARK 465 HIS C 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 504 O HOH C 651 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 243 -86.25 -109.38 REMARK 500 ALA A 244 59.16 -114.31 REMARK 500 LEU B 50 11.11 57.61 REMARK 500 ARG B 145 31.53 -92.30 REMARK 500 ALA B 220 10.50 59.96 REMARK 500 THR C 201 -66.41 -122.66 REMARK 500 ILE C 263 -51.22 -123.08 REMARK 500 HIS C 265 64.72 -158.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HH2 RELATED DB: PDB REMARK 900 STRUCTURE OF PPSR WITHOUT THE HTH MOTIF REMARK 900 RELATED ID: 4HH0 RELATED DB: PDB REMARK 900 STRUCTURE OF APPA C20S WITHOUT THE CYS-RICH REGION REMARK 900 RELATED ID: 4HH1 RELATED DB: PDB REMARK 900 STRUCTURE OF APPA WILD-TYPE WITHOUT THE CYS-RICH REGION DBREF 4HH3 A 2 257 UNP Q3J179 Q3J179_RHOS4 2 257 DBREF 4HH3 B 2 257 UNP Q3J179 Q3J179_RHOS4 2 257 DBREF 4HH3 C 168 399 UNP Q53119 Q53119_RHOSH 168 399 SEQADV 4HH3 GLY A -4 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 ALA A -3 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 MET A -2 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 GLY A -1 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 MET A 0 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 GLY A 1 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 GLY B -4 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 ALA B -3 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 MET B -2 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 GLY B -1 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 MET B 0 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 GLY B 1 UNP Q3J179 EXPRESSION TAG SEQADV 4HH3 SER C 399 UNP Q53119 CYS 399 ENGINEERED MUTATION SEQADV 4HH3 SER C 400 UNP Q53119 EXPRESSION TAG SEQADV 4HH3 ALA C 401 UNP Q53119 EXPRESSION TAG SEQADV 4HH3 HIS C 402 UNP Q53119 EXPRESSION TAG SEQADV 4HH3 HIS C 403 UNP Q53119 EXPRESSION TAG SEQADV 4HH3 HIS C 404 UNP Q53119 EXPRESSION TAG SEQADV 4HH3 HIS C 405 UNP Q53119 EXPRESSION TAG SEQADV 4HH3 HIS C 406 UNP Q53119 EXPRESSION TAG SEQADV 4HH3 HIS C 407 UNP Q53119 EXPRESSION TAG SEQRES 1 A 262 GLY ALA MET GLY MET GLY LEU ALA GLY GLY SER LEU PRO SEQRES 2 A 262 SER LEU ALA PRO ASP LEU VAL ARG ASP LEU ILE ALA THR SEQRES 3 A 262 ALA ALA ASP ILE SER LEU LEU VAL SER GLN GLU GLY VAL SEQRES 4 A 262 VAL ARG GLU VAL MET ALA ASN PRO HIS HIS PRO SER PHE SEQRES 5 A 262 GLY GLN LEU SER GLU TRP GLU GLY ARG PRO LEU GLU GLU SEQRES 6 A 262 VAL LEU THR ALA GLU SER VAL ALA LYS PHE ARG LEU ARG SEQRES 7 A 262 SER GLU GLY LEU GLU PRO GLY ARG GLY SER VAL ALA VAL SEQRES 8 A 262 GLU LEU ASN HIS ILE ASP PRO ARG SER PHE GLU PHE PRO SEQRES 9 A 262 ILE ARG TYR ILE LEU HIS ARG LEU PRO ALA ASP ARG SER SEQRES 10 A 262 ILE LEU MET LEU GLY ARG ASP LEU ARG PRO ILE ALA GLU SEQRES 11 A 262 VAL GLN GLN GLN LEU VAL ALA ALA GLN LEU ALA MET GLU SEQRES 12 A 262 ARG ASP TYR GLU THR GLN ARG GLU MET GLU THR ARG TYR SEQRES 13 A 262 ARG VAL VAL LEU ASP VAL SER ARG ASP PRO MET VAL LEU SEQRES 14 A 262 VAL SER MET SER THR GLY ARG ILE VAL ASP LEU ASN SER SEQRES 15 A 262 ALA ALA GLY LEU LEU LEU GLY GLY VAL ARG GLN ASP LEU SEQRES 16 A 262 LEU GLY ALA ALA ILE ALA GLN GLU PHE GLU GLY ARG ARG SEQRES 17 A 262 ARG GLY GLU PHE MET GLU THR MET THR ASN LEU ALA ALA SEQRES 18 A 262 THR GLU SER ALA ALA PRO VAL GLU VAL LEU ALA ARG ARG SEQRES 19 A 262 SER GLN LYS ARG LEU LEU VAL VAL PRO ARG VAL PHE ARG SEQRES 20 A 262 ALA ALA GLY GLU ARG LEU LEU LEU CYS GLN ILE ASP PRO SEQRES 21 A 262 ALA ASP SEQRES 1 B 262 GLY ALA MET GLY MET GLY LEU ALA GLY GLY SER LEU PRO SEQRES 2 B 262 SER LEU ALA PRO ASP LEU VAL ARG ASP LEU ILE ALA THR SEQRES 3 B 262 ALA ALA ASP ILE SER LEU LEU VAL SER GLN GLU GLY VAL SEQRES 4 B 262 VAL ARG GLU VAL MET ALA ASN PRO HIS HIS PRO SER PHE SEQRES 5 B 262 GLY GLN LEU SER GLU TRP GLU GLY ARG PRO LEU GLU GLU SEQRES 6 B 262 VAL LEU THR ALA GLU SER VAL ALA LYS PHE ARG LEU ARG SEQRES 7 B 262 SER GLU GLY LEU GLU PRO GLY ARG GLY SER VAL ALA VAL SEQRES 8 B 262 GLU LEU ASN HIS ILE ASP PRO ARG SER PHE GLU PHE PRO SEQRES 9 B 262 ILE ARG TYR ILE LEU HIS ARG LEU PRO ALA ASP ARG SER SEQRES 10 B 262 ILE LEU MET LEU GLY ARG ASP LEU ARG PRO ILE ALA GLU SEQRES 11 B 262 VAL GLN GLN GLN LEU VAL ALA ALA GLN LEU ALA MET GLU SEQRES 12 B 262 ARG ASP TYR GLU THR GLN ARG GLU MET GLU THR ARG TYR SEQRES 13 B 262 ARG VAL VAL LEU ASP VAL SER ARG ASP PRO MET VAL LEU SEQRES 14 B 262 VAL SER MET SER THR GLY ARG ILE VAL ASP LEU ASN SER SEQRES 15 B 262 ALA ALA GLY LEU LEU LEU GLY GLY VAL ARG GLN ASP LEU SEQRES 16 B 262 LEU GLY ALA ALA ILE ALA GLN GLU PHE GLU GLY ARG ARG SEQRES 17 B 262 ARG GLY GLU PHE MET GLU THR MET THR ASN LEU ALA ALA SEQRES 18 B 262 THR GLU SER ALA ALA PRO VAL GLU VAL LEU ALA ARG ARG SEQRES 19 B 262 SER GLN LYS ARG LEU LEU VAL VAL PRO ARG VAL PHE ARG SEQRES 20 B 262 ALA ALA GLY GLU ARG LEU LEU LEU CYS GLN ILE ASP PRO SEQRES 21 B 262 ALA ASP SEQRES 1 C 240 VAL GLU ALA ASP THR PHE ALA LEU TYR ALA LEU THR GLU SEQRES 2 C 240 ALA GLN ALA GLY ARG SER GLY ARG ALA LYS ALA VAL ALA SEQRES 3 C 240 ARG LEU SER ASP LEU LEU SER THR ASP PRO LEU GLY ARG SEQRES 4 C 240 LEU THR GLU VAL GLU GLU LEU LEU ARG ALA HIS ALA PRO SEQRES 5 C 240 THR ALA ALA ASP PHE ALA ARG LEU PHE GLU ALA CYS ALA SEQRES 6 C 240 GLU ARG LEU THR ARG ALA LEU ALA GLU ASP ARG ILE SER SEQRES 7 C 240 ARG MET GLN VAL THR LEU ALA TYR SER ALA LEU GLN MET SEQRES 8 C 240 ALA LEU ARG ARG ILE HIS HIS LEU PRO ASP PRO GLN LYS SEQRES 9 C 240 SER VAL GLY ALA VAL LEU VAL ALA GLY VAL PRO GLY HIS SEQRES 10 C 240 LYS PRO ILE LEU GLU ALA ALA LEU ALA ALA GLU MET LEU SEQRES 11 C 240 ARG ALA VAL GLY TRP SER THR SER VAL VAL HIS PRO GLU SEQRES 12 C 240 SER VAL ALA ALA LEU ALA ALA ARG LEU LYS THR SER ARG SEQRES 13 C 240 THR SER THR LEU VAL VAL ALA PRO SER LEU LEU GLU GLY SEQRES 14 C 240 THR GLU GLN GLU ALA ASP THR LEU ARG PHE VAL SER ALA SEQRES 15 C 240 LEU ARG ALA ARG THR ASP LEU PRO GLY LEU SER ILE LEU SEQRES 16 C 240 VAL GLY GLY ARG LEU ALA GLN LEU PRO PRO SER LYS LEU SEQRES 17 C 240 LYS ASP SER GLY ALA ASP ALA GLY PHE ALA HIS LEU ALA SEQRES 18 C 240 LEU LEU PRO ALA ALA LEU ALA ARG VAL ALA SER SER ALA SEQRES 19 C 240 HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *683(H2 O) HELIX 1 1 ALA A 11 ALA A 23 1 13 HELIX 2 2 LEU A 50 GLU A 54 5 5 HELIX 3 3 PRO A 57 LEU A 62 5 6 HELIX 4 4 THR A 63 GLU A 75 1 13 HELIX 5 5 LEU A 120 SER A 158 1 39 HELIX 6 6 ASN A 176 GLY A 184 1 9 HELIX 7 7 VAL A 186 LEU A 191 1 6 HELIX 8 8 ALA A 194 PHE A 199 5 6 HELIX 9 9 ARG A 203 ALA A 216 1 14 HELIX 10 10 ALA B 11 ALA B 23 1 13 HELIX 11 11 LEU B 50 GLU B 54 5 5 HELIX 12 12 PRO B 57 LEU B 62 5 6 HELIX 13 13 THR B 63 GLY B 76 1 14 HELIX 14 14 LEU B 120 THR B 143 1 24 HELIX 15 15 ARG B 145 SER B 158 1 14 HELIX 16 16 ASN B 176 GLY B 184 1 9 HELIX 17 17 VAL B 186 LEU B 191 1 6 HELIX 18 18 ILE B 195 PHE B 199 5 5 HELIX 19 19 ARG B 203 GLU B 218 1 16 HELIX 20 20 ARG C 185 ASP C 202 1 18 HELIX 21 21 ARG C 206 ALA C 218 1 13 HELIX 22 22 THR C 220 GLU C 241 1 22 HELIX 23 23 SER C 245 HIS C 264 1 20 HELIX 24 24 PRO C 286 VAL C 300 1 15 HELIX 25 25 SER C 311 SER C 322 1 12 HELIX 26 26 THR C 337 ARG C 353 1 17 HELIX 27 27 ARG C 366 LEU C 370 5 5 HELIX 28 28 PRO C 371 SER C 378 1 8 HELIX 29 29 HIS C 386 ALA C 388 5 3 HELIX 30 30 LEU C 389 SER C 400 1 12 SHEET 1 A 5 VAL A 35 ALA A 40 0 SHEET 2 A 5 ILE A 25 VAL A 29 -1 N SER A 26 O MET A 39 SHEET 3 A 5 ILE A 113 ASP A 119 -1 O ILE A 113 N VAL A 29 SHEET 4 A 5 GLU A 97 ARG A 106 -1 N ILE A 103 O LEU A 116 SHEET 5 A 5 VAL A 86 ILE A 91 -1 N VAL A 86 O TYR A 102 SHEET 1 B 5 ILE A 172 LEU A 175 0 SHEET 2 B 5 MET A 162 SER A 166 -1 N LEU A 164 O VAL A 173 SHEET 3 B 5 ARG A 247 PRO A 255 -1 O LEU A 249 N VAL A 165 SHEET 4 B 5 ARG A 233 ARG A 242 -1 N PHE A 241 O LEU A 248 SHEET 5 B 5 VAL A 223 LEU A 226 -1 N VAL A 223 O VAL A 236 SHEET 1 C 5 VAL B 35 MET B 39 0 SHEET 2 C 5 ILE B 25 VAL B 29 -1 N LEU B 28 O ARG B 36 SHEET 3 C 5 ILE B 113 ASP B 119 -1 O MET B 115 N LEU B 27 SHEET 4 C 5 PHE B 98 ARG B 106 -1 N ARG B 101 O ARG B 118 SHEET 5 C 5 VAL B 84 HIS B 90 -1 N VAL B 84 O LEU B 104 SHEET 1 D 5 ILE B 172 LEU B 175 0 SHEET 2 D 5 MET B 162 SER B 166 -1 N LEU B 164 O ASP B 174 SHEET 3 D 5 GLU B 246 PRO B 255 -1 O CYS B 251 N VAL B 163 SHEET 4 D 5 ARG B 233 ALA B 243 -1 N ALA B 243 O GLU B 246 SHEET 5 D 5 VAL B 223 LEU B 226 -1 N VAL B 225 O LEU B 234 SHEET 1 E 5 TRP C 302 VAL C 307 0 SHEET 2 E 5 GLY C 274 ALA C 279 1 N VAL C 278 O SER C 305 SHEET 3 E 5 THR C 326 VAL C 329 1 O VAL C 328 N ALA C 279 SHEET 4 E 5 SER C 360 GLY C 364 1 O SER C 360 N LEU C 327 SHEET 5 E 5 ALA C 382 PHE C 384 1 O PHE C 384 N VAL C 363 CRYST1 89.780 188.300 51.860 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011138 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019283 0.00000