PDB Short entry for 4HN6 HEADER TRANSCRIPTION/DNA 18-OCT-12 4HN6 TITLE GR DNA BINDING DOMAIN R460D/D462R - TSLP NGRE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*GP*CP*CP*TP*CP*CP*GP*GP*GP*AP*GP*AP*GP*CP*T)- COMPND 9 3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*AP*GP*CP*TP*CP*TP*CP*CP*CP*GP*GP*AP*GP*GP*CP*G)- COMPND 14 3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR3C1, GRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS GLUCOCORTICOID RECEPTOR, STEROID RECEPTORS, DNA, NGRE, REPRESSION, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.H.HUDSON,C.E.YOUN,E.A.ORTLUND REVDAT 5 28-FEB-24 4HN6 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4HN6 1 AUTHOR REMARK REVDAT 3 16-JAN-13 4HN6 1 JRNL REVDAT 2 02-JAN-13 4HN6 1 JRNL REVDAT 1 12-DEC-12 4HN6 0 JRNL AUTH W.H.HUDSON,C.YOUN,E.A.ORTLUND JRNL TITL THE STRUCTURAL BASIS OF DIRECT GLUCOCORTICOID-MEDIATED JRNL TITL 2 TRANSREPRESSION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 53 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23222642 JRNL DOI 10.1038/NSMB.2456 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 11669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4860 - 5.0954 0.99 1458 162 0.1525 0.1816 REMARK 3 2 5.0954 - 4.0453 1.00 1375 153 0.1597 0.2043 REMARK 3 3 4.0453 - 3.5341 1.00 1345 149 0.1751 0.2515 REMARK 3 4 3.5341 - 3.2111 0.99 1336 148 0.1916 0.2448 REMARK 3 5 3.2111 - 2.9810 1.00 1335 148 0.2343 0.2741 REMARK 3 6 2.9810 - 2.8053 0.99 1316 147 0.2701 0.3605 REMARK 3 7 2.8053 - 2.6648 0.93 1225 137 0.2819 0.3342 REMARK 3 8 2.6648 - 2.5490 0.83 1112 123 0.3240 0.3681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1860 REMARK 3 ANGLE : 1.302 2633 REMARK 3 CHIRALITY : 0.075 286 REMARK 3 PLANARITY : 0.003 225 REMARK 3 DIHEDRAL : 24.164 735 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11685 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.549 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % PEG 2000 MME, 6 % GLYCEROL, 0.1M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.37000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 SER A 400 REMARK 465 SER A 401 REMARK 465 GLY A 402 REMARK 465 VAL A 403 REMARK 465 ASP A 404 REMARK 465 LEU A 405 REMARK 465 GLY A 406 REMARK 465 THR A 407 REMARK 465 GLU A 408 REMARK 465 ASN A 409 REMARK 465 LEU A 410 REMARK 465 TYR A 411 REMARK 465 PHE A 412 REMARK 465 GLN A 413 REMARK 465 SER A 414 REMARK 465 ASN A 415 REMARK 465 ALA A 416 REMARK 465 PRO A 417 REMARK 465 PRO A 418 REMARK 465 ARG A 491 REMARK 465 LYS A 492 REMARK 465 THR A 493 REMARK 465 LYS A 494 REMARK 465 LYS A 495 REMARK 465 LYS A 496 REMARK 465 ILE A 497 REMARK 465 LYS A 498 REMARK 465 GLY A 499 REMARK 465 ILE A 500 REMARK 465 GLN A 501 REMARK 465 GLN A 502 REMARK 465 ALA A 503 REMARK 465 THR A 504 REMARK 465 THR A 505 REMARK 465 GLY A 506 REMARK 465 MET B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 SER B 400 REMARK 465 SER B 401 REMARK 465 GLY B 402 REMARK 465 VAL B 403 REMARK 465 ASP B 404 REMARK 465 LEU B 405 REMARK 465 GLY B 406 REMARK 465 THR B 407 REMARK 465 GLU B 408 REMARK 465 ASN B 409 REMARK 465 LEU B 410 REMARK 465 TYR B 411 REMARK 465 PHE B 412 REMARK 465 GLN B 413 REMARK 465 SER B 414 REMARK 465 ASN B 415 REMARK 465 ALA B 416 REMARK 465 PRO B 417 REMARK 465 PRO B 418 REMARK 465 ARG B 491 REMARK 465 LYS B 492 REMARK 465 THR B 493 REMARK 465 LYS B 494 REMARK 465 LYS B 495 REMARK 465 LYS B 496 REMARK 465 ILE B 497 REMARK 465 LYS B 498 REMARK 465 GLY B 499 REMARK 465 ILE B 500 REMARK 465 GLN B 501 REMARK 465 GLN B 502 REMARK 465 ALA B 503 REMARK 465 THR B 504 REMARK 465 THR B 505 REMARK 465 GLY B 506 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 452 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 427 CD REMARK 480 GLY A 451 CA REMARK 480 ILE A 464 CD1 REMARK 480 LYS A 467 CD REMARK 480 LYS A 471 CE REMARK 480 ARG A 479 CZ REMARK 480 LEU A 482 CD2 REMARK 480 MET A 486 CE REMARK 480 LEU A 488 CD1 REMARK 480 GLU A 489 CD REMARK 480 DG C 868 O3' REMARK 480 DT C 872 P REMARK 480 DT D 845 C3' REMARK 480 DT D 847 O4' REMARK 480 DC D 849 C2' REMARK 480 GLU B 427 CG CD REMARK 480 GLU B 450 CD REMARK 480 GLN B 452 CD REMARK 480 HIS B 453 C REMARK 480 ASN B 454 C REMARK 480 LYS B 471 CD REMARK 480 TYR B 478 CE2 REMARK 480 LYS B 480 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 859 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DT C 861 O5' - C5' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT C 861 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 862 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC C 863 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC C 863 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG C 865 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG C 865 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG C 868 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC C 871 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA D 842 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC D 846 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC D 850 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC D 856 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 426 -178.51 -69.05 REMARK 500 GLN A 452 72.49 48.48 REMARK 500 ASN A 454 -85.26 -36.65 REMARK 500 TYR A 455 108.56 64.73 REMARK 500 ASP A 460 35.22 -141.51 REMARK 500 LEU A 488 33.24 -86.53 REMARK 500 GLU A 489 -65.68 -104.22 REMARK 500 GLN B 452 42.62 39.59 REMARK 500 GLU B 489 67.69 -114.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 421 SG REMARK 620 2 CYS A 424 SG 111.8 REMARK 620 3 CYS A 438 SG 116.8 106.3 REMARK 620 4 CYS A 441 SG 102.4 112.4 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 457 SG REMARK 620 2 CYS A 463 SG 103.7 REMARK 620 3 CYS A 473 SG 118.2 108.5 REMARK 620 4 CYS A 476 SG 115.0 109.2 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 421 SG REMARK 620 2 CYS B 424 SG 110.9 REMARK 620 3 CYS B 438 SG 117.3 102.8 REMARK 620 4 CYS B 441 SG 112.7 109.2 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 457 SG REMARK 620 2 CYS B 463 SG 108.7 REMARK 620 3 CYS B 473 SG 113.2 109.8 REMARK 620 4 CYS B 476 SG 111.3 112.1 101.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HN5 RELATED DB: PDB DBREF 4HN6 A 417 506 UNP P04150 GCR_HUMAN 417 506 DBREF 4HN6 B 417 506 UNP P04150 GCR_HUMAN 417 506 DBREF 4HN6 C 857 872 PDB 4HN6 4HN6 857 872 DBREF 4HN6 D 842 857 PDB 4HN6 4HN6 842 857 SEQADV 4HN6 MET A 393 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS A 394 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS A 395 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS A 396 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS A 397 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS A 398 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS A 399 UNP P04150 EXPRESSION TAG SEQADV 4HN6 SER A 400 UNP P04150 EXPRESSION TAG SEQADV 4HN6 SER A 401 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLY A 402 UNP P04150 EXPRESSION TAG SEQADV 4HN6 VAL A 403 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASP A 404 UNP P04150 EXPRESSION TAG SEQADV 4HN6 LEU A 405 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLY A 406 UNP P04150 EXPRESSION TAG SEQADV 4HN6 THR A 407 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLU A 408 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASN A 409 UNP P04150 EXPRESSION TAG SEQADV 4HN6 LEU A 410 UNP P04150 EXPRESSION TAG SEQADV 4HN6 TYR A 411 UNP P04150 EXPRESSION TAG SEQADV 4HN6 PHE A 412 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLN A 413 UNP P04150 EXPRESSION TAG SEQADV 4HN6 SER A 414 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASN A 415 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ALA A 416 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASP A 460 UNP P04150 ARG 460 ENGINEERED MUTATION SEQADV 4HN6 ARG A 462 UNP P04150 ASP 462 ENGINEERED MUTATION SEQADV 4HN6 MET B 393 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS B 394 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS B 395 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS B 396 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS B 397 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS B 398 UNP P04150 EXPRESSION TAG SEQADV 4HN6 HIS B 399 UNP P04150 EXPRESSION TAG SEQADV 4HN6 SER B 400 UNP P04150 EXPRESSION TAG SEQADV 4HN6 SER B 401 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLY B 402 UNP P04150 EXPRESSION TAG SEQADV 4HN6 VAL B 403 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASP B 404 UNP P04150 EXPRESSION TAG SEQADV 4HN6 LEU B 405 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLY B 406 UNP P04150 EXPRESSION TAG SEQADV 4HN6 THR B 407 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLU B 408 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASN B 409 UNP P04150 EXPRESSION TAG SEQADV 4HN6 LEU B 410 UNP P04150 EXPRESSION TAG SEQADV 4HN6 TYR B 411 UNP P04150 EXPRESSION TAG SEQADV 4HN6 PHE B 412 UNP P04150 EXPRESSION TAG SEQADV 4HN6 GLN B 413 UNP P04150 EXPRESSION TAG SEQADV 4HN6 SER B 414 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASN B 415 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ALA B 416 UNP P04150 EXPRESSION TAG SEQADV 4HN6 ASP B 460 UNP P04150 ARG 460 ENGINEERED MUTATION SEQADV 4HN6 ARG B 462 UNP P04150 ASP 462 ENGINEERED MUTATION SEQRES 1 A 114 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 114 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA PRO PRO SEQRES 3 A 114 LYS LEU CYS LEU VAL CYS SER ASP GLU ALA SER GLY CYS SEQRES 4 A 114 HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS VAL PHE SEQRES 5 A 114 PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR LEU CYS SEQRES 6 A 114 ALA GLY ASP ASN ARG CYS ILE ILE ASP LYS ILE ARG ARG SEQRES 7 A 114 LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS LEU GLN SEQRES 8 A 114 ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS LYS LYS SEQRES 9 A 114 ILE LYS GLY ILE GLN GLN ALA THR THR GLY SEQRES 1 C 16 DC DG DC DC DT DC DC DG DG DG DA DG DA SEQRES 2 C 16 DG DC DT SEQRES 1 D 16 DA DG DC DT DC DT DC DC DC DG DG DA DG SEQRES 2 D 16 DG DC DG SEQRES 1 B 114 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 114 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA PRO PRO SEQRES 3 B 114 LYS LEU CYS LEU VAL CYS SER ASP GLU ALA SER GLY CYS SEQRES 4 B 114 HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS VAL PHE SEQRES 5 B 114 PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR LEU CYS SEQRES 6 B 114 ALA GLY ASP ASN ARG CYS ILE ILE ASP LYS ILE ARG ARG SEQRES 7 B 114 LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS LEU GLN SEQRES 8 B 114 ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS LYS LYS SEQRES 9 B 114 ILE LYS GLY ILE GLN GLN ALA THR THR GLY HET ZN A 601 1 HET ZN A 602 1 HET ZN B 601 1 HET ZN B 602 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *43(H2 O) HELIX 1 1 CYS A 438 GLN A 452 1 15 HELIX 2 2 CYS A 473 ALA A 484 1 12 HELIX 3 3 CYS B 438 GLY B 451 1 14 HELIX 4 4 CYS B 473 ALA B 484 1 12 SHEET 1 A 2 CYS A 431 HIS A 432 0 SHEET 2 A 2 VAL A 435 LEU A 436 -1 O VAL A 435 N HIS A 432 SHEET 1 B 2 GLY B 430 HIS B 432 0 SHEET 2 B 2 VAL B 435 THR B 437 -1 O VAL B 435 N HIS B 432 LINK SG CYS A 421 ZN ZN A 601 1555 1555 2.35 LINK SG CYS A 424 ZN ZN A 601 1555 1555 2.33 LINK SG CYS A 438 ZN ZN A 601 1555 1555 2.39 LINK SG CYS A 441 ZN ZN A 601 1555 1555 2.35 LINK SG CYS A 457 ZN ZN A 602 1555 1555 2.30 LINK SG CYS A 463 ZN ZN A 602 1555 1555 2.33 LINK SG CYS A 473 ZN ZN A 602 1555 1555 2.22 LINK SG CYS A 476 ZN ZN A 602 1555 1555 2.43 LINK SG CYS B 421 ZN ZN B 601 1555 1555 2.30 LINK SG CYS B 424 ZN ZN B 601 1555 1555 2.37 LINK SG CYS B 438 ZN ZN B 601 1555 1555 2.34 LINK SG CYS B 441 ZN ZN B 601 1555 1555 2.40 LINK SG CYS B 457 ZN ZN B 602 1555 1555 2.12 LINK SG CYS B 463 ZN ZN B 602 1555 1555 2.29 LINK SG CYS B 473 ZN ZN B 602 1555 1555 2.30 LINK SG CYS B 476 ZN ZN B 602 1555 1555 2.33 SITE 1 AC1 4 CYS A 421 CYS A 424 CYS A 438 CYS A 441 SITE 1 AC2 4 CYS A 457 CYS A 463 CYS A 473 CYS A 476 SITE 1 AC3 4 CYS B 421 CYS B 424 CYS B 438 CYS B 441 SITE 1 AC4 4 CYS B 457 CYS B 463 CYS B 473 CYS B 476 CRYST1 38.740 87.870 103.150 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009695 0.00000