PDB Short entry for 4HP3 HEADER DNA BINDING PROTEIN/DNA 23-OCT-12 4HP3 TITLE CRYSTAL STRUCTURE OF TET3 IN COMPLEX WITH A CPG DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LOC100036628 PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: XENOPUS (SILURANA) TROPICALIS; SOURCE 5 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 6 ORGANISM_TAXID: 8364; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CXXC, DNA METHYLATION, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.CHAO,W.TEMPEL,C.BIAN,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 03-APR-24 4HP3 1 REMARK REVDAT 3 28-FEB-24 4HP3 1 REMARK SEQADV LINK REVDAT 2 19-DEC-12 4HP3 1 JRNL REVDAT 1 05-DEC-12 4HP3 0 JRNL AUTH Y.XU,C.XU,A.KATO,W.TEMPEL,J.G.ABREU,C.BIAN,Y.HU,D.HU,B.ZHAO, JRNL AUTH 2 T.CEROVINA,J.DIAO,F.WU,H.H.HE,Q.CUI,E.CLARK,C.MA,A.BARBARA, JRNL AUTH 3 G.J.VEENSTRA,G.XU,U.B.KAISER,X.S.LIU,S.P.SUGRUE,X.HE,J.MIN, JRNL AUTH 4 Y.KATO,Y.G.SHI JRNL TITL TET3 CXXC DOMAIN AND DIOXYGENASE ACTIVITY COOPERATIVELY JRNL TITL 2 REGULATE KEY GENES FOR XENOPUS EYE AND NEURAL DEVELOPMENT. JRNL REF CELL(CAMBRIDGE,MASS.) V. 151 1200 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 23217707 JRNL DOI 10.1016/J.CELL.2012.11.014 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0027 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 384 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -0.73900 REMARK 3 B33 (A**2) : 1.87500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.39500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 940 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 662 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1359 ; 1.359 ; 1.602 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1530 ; 1.160 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 50 ; 6.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ;40.342 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 79 ;14.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 127 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 719 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 213 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -18.4712 -18.9190 8.1644 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.5299 REMARK 3 T33: 0.1427 T12: -0.2114 REMARK 3 T13: 0.0867 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 4.0949 L22: 9.4711 REMARK 3 L33: 4.6317 L12: 5.2510 REMARK 3 L13: -0.6890 L23: 0.4565 REMARK 3 S TENSOR REMARK 3 S11: -0.6484 S12: 0.9541 S13: -0.2178 REMARK 3 S21: -0.5534 S22: 0.5198 S23: 0.1219 REMARK 3 S31: -0.0817 S32: 0.0359 S33: 0.1286 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7733 -18.0552 9.3508 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.3459 REMARK 3 T33: 0.1683 T12: -0.0713 REMARK 3 T13: -0.0169 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 9.5126 L22: 7.8003 REMARK 3 L33: 5.0148 L12: 6.4532 REMARK 3 L13: 0.5532 L23: 0.9141 REMARK 3 S TENSOR REMARK 3 S11: -0.1653 S12: 0.3001 S13: 0.0626 REMARK 3 S21: -0.4054 S22: 0.1393 S23: 0.2939 REMARK 3 S31: 0.1253 S32: -0.2641 S33: 0.0260 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 59 C 109 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7853 -17.3567 19.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.1512 REMARK 3 T33: 0.0413 T12: -0.0699 REMARK 3 T13: 0.0221 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.8636 L22: 10.3005 REMARK 3 L33: 5.4021 L12: 0.4324 REMARK 3 L13: -2.1731 L23: 0.3064 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.3738 S13: 0.0030 REMARK 3 S21: -0.5485 S22: 0.1085 S23: -0.0284 REMARK 3 S31: -0.1633 S32: -0.1043 S33: -0.0313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. COOT AND THE MOLPROBITY REMARK 3 SERVER WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 4HP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 34.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.710 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5727 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.71 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED MODEL OF COMPLEX BETWEEN SAME PROTEIN REMARK 200 CONSTRUCT AND A METHYLATED DNA FRAGMENT. THAT STRUCTURE WAS REMARK 200 SOLVED BY A COMBINATION OF ZINC-SAD (SHELXD/E) AND MOLECULAR REMARK 200 REPLACEMENT IN "DENSITY" MODE (MOLREP), USING IDEAL DNA (COOT) REMARK 200 AND HUMAN MLL2 (CURRENTLY UNPUBLISHED) AS SEARCH MODELS. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-1500, 0.2M SODIUM CHLORIDE, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.94600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.72750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.94600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.72750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 40 REMARK 465 HIS C 41 REMARK 465 HIS C 42 REMARK 465 HIS C 43 REMARK 465 HIS C 44 REMARK 465 HIS C 45 REMARK 465 HIS C 46 REMARK 465 SER C 47 REMARK 465 SER C 48 REMARK 465 GLY C 49 REMARK 465 ARG C 50 REMARK 465 GLU C 51 REMARK 465 ASN C 52 REMARK 465 LEU C 53 REMARK 465 TYR C 54 REMARK 465 PHE C 55 REMARK 465 GLN C 56 REMARK 465 GLY C 57 REMARK 465 SER C 58 REMARK 465 LYS C 110 REMARK 465 GLY C 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 GLU C 75 CD OE1 OE2 REMARK 470 THR C 88 OG1 CG2 REMARK 470 LYS C 104 CG CD CE NZ REMARK 470 VAL C 106 CG1 CG2 REMARK 470 VAL C 107 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 5 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 60 -168.48 -109.25 REMARK 500 ASN C 85 51.47 -111.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 65 SG REMARK 620 2 CYS C 68 SG 108.8 REMARK 620 3 CYS C 71 SG 116.4 101.2 REMARK 620 4 CYS C 98 SG 105.9 124.5 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 77 SG REMARK 620 2 CYS C 80 SG 112.1 REMARK 620 3 CYS C 83 SG 119.2 102.7 REMARK 620 4 CYS C 93 SG 102.4 116.2 104.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HP1 RELATED DB: PDB DBREF 4HP3 C 58 111 UNP A0JP82 A0JP82_XENTR 58 111 DBREF 4HP3 A 1 12 PDB 4HP3 4HP3 1 12 DBREF 4HP3 B 1 12 PDB 4HP3 4HP3 1 12 SEQADV 4HP3 MET C 40 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 41 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 42 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 43 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 44 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 45 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 46 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 SER C 47 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 SER C 48 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLY C 49 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 ARG C 50 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLU C 51 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 ASN C 52 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 LEU C 53 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 TYR C 54 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 PHE C 55 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLN C 56 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLY C 57 UNP A0JP82 EXPRESSION TAG SEQRES 1 A 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 B 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 C 72 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 C 72 LEU TYR PHE GLN GLY SER ASN LYS LYS ARG LYS ARG CYS SEQRES 3 C 72 GLY VAL CYS VAL PRO CYS LEU ARG LYS GLU PRO CYS GLY SEQRES 4 C 72 ALA CYS TYR ASN CYS VAL ASN ARG SER THR SER HIS GLN SEQRES 5 C 72 ILE CYS LYS MET ARG LYS CYS GLU GLN LEU LYS LYS LYS SEQRES 6 C 72 ARG VAL VAL PRO MET LYS GLY HET UNX A 101 1 HET UNX A 102 1 HET ZN C 201 1 HET ZN C 202 1 HET UNX C 203 1 HETNAM UNX UNKNOWN ATOM OR ION HETNAM ZN ZINC ION FORMUL 4 UNX 3(X) FORMUL 6 ZN 2(ZN 2+) FORMUL 9 HOH *23(H2 O) HELIX 1 1 CYS C 68 ARG C 73 1 6 HELIX 2 2 CYS C 80 ASN C 85 1 6 HELIX 3 3 ASN C 85 HIS C 90 1 6 LINK SG CYS C 65 ZN ZN C 201 1555 1555 2.34 LINK SG CYS C 68 ZN ZN C 201 1555 1555 2.31 LINK SG CYS C 71 ZN ZN C 201 1555 1555 2.28 LINK SG CYS C 77 ZN ZN C 202 1555 1555 2.33 LINK SG CYS C 80 ZN ZN C 202 1555 1555 2.28 LINK SG CYS C 83 ZN ZN C 202 1555 1555 2.34 LINK SG CYS C 93 ZN ZN C 202 1555 1555 2.38 LINK SG CYS C 98 ZN ZN C 201 1555 1555 2.30 SITE 1 AC1 4 CYS C 65 CYS C 68 CYS C 71 CYS C 98 SITE 1 AC2 4 CYS C 77 CYS C 80 CYS C 83 CYS C 93 CRYST1 69.892 39.455 54.134 90.00 99.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014308 0.000000 0.002502 0.00000 SCALE2 0.000000 0.025345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018753 0.00000