PDB Short entry for 4HTC HEADER HYDROLASE/HYDROLASE INHIBITOR 25-JUN-93 4HTC TITLE THE REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX CAVEAT 4HTC NAG H 400 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-THROMBIN (SMALL SUBUNIT); COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALPHA-THROMBIN (LARGE SUBUNIT); COMPND 8 CHAIN: H; COMPND 9 EC: 3.4.21.5; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HIRUDIN VARIANT 2; COMPND 13 CHAIN: I; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 11 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 12 ORGANISM_TAXID: 6421 KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX, SERINE PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY,T.J.RYDEL,W.BODE,R.HUBER REVDAT 6 29-JUL-20 4HTC 1 CAVEAT COMPND REMARK SEQADV REVDAT 6 2 1 HETNAM LINK SITE REVDAT 5 29-NOV-17 4HTC 1 HELIX REVDAT 4 13-JUL-11 4HTC 1 VERSN REVDAT 3 24-FEB-09 4HTC 1 VERSN REVDAT 2 01-APR-03 4HTC 1 JRNL REVDAT 1 31-JAN-94 4HTC 0 JRNL AUTH T.J.RYDEL,A.TULINSKY,W.BODE,R.HUBER JRNL TITL REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX. JRNL REF J.MOL.BIOL. V. 221 583 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1920434 JRNL DOI 10.1016/0022-2836(91)80074-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.RYDEL,K.G.RAVICHANDRAN,A.TULINSKY,W.BODE,R.HUBER, REMARK 1 AUTH 2 C.ROITSCH,J.W.FENTON II REMARK 1 TITL THE STRUCTURE OF A COMPLEX OF RECOMBINANT HIRUDIN AND HUMAN REMARK 1 TITL 2 ALPHA-THROMBIN REMARK 1 REF SCIENCE V. 249 277 1990 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.BODE,I.MAYR,U.BAUMANN,R.HUBER,S.R.STONE,J.HOFSTEENGE REMARK 1 TITL THE REFINED 1.9 ANGSTROMS CRYSTAL STRUCTURE OF HUMAN REMARK 1 TITL 2 ALPHA-THROMBIN: INTERACTION WITH D-PHE-PRO-ARG REMARK 1 TITL 3 CHLOROMETHYLKETONE AND SIGNIFICANCE OF THE TYR-PRO-PRO-TRP REMARK 1 TITL 4 INSERTION SEGMENT REMARK 1 REF EMBO J. V. 8 3467 1989 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROFFT REMARK 3 AUTHORS : KONNERT,HENDRICKSON,FINZEL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.021 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.051 ; 0.035 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.052 ; 0.045 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.017 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.200 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.220 ; 0.550 REMARK 3 MULTIPLE TORSION (A) : 0.270 ; 0.550 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.270 ; 0.550 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.000 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 23.000; 20.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.600 ; 0.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.100 ; 1.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.200 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.900 ; 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.02000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.27000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.03000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.27000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.01000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.27000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 99.03000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.27000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.01000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 90.54000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -90.54000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 132.04000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN REMARK 400 INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN REMARK 400 INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN REMARK 400 INDICATOR *I* IS USED FOR HIRUDIN. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 1H REMARK 465 PHE L 1G REMARK 465 ARG L 14N REMARK 465 GLU H 247 REMARK 465 SER I 32 REMARK 465 ASN I 33 REMARK 465 GLY I 34 REMARK 465 LYS I 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 1C OE2 REMARK 470 LYS L 10 NZ REMARK 470 ASP L 14L OD1 OD2 REMARK 470 ARG H 50 NH1 NH2 REMARK 470 ASP H 60E CG OD1 OD2 REMARK 470 ARG H 93 NH2 REMARK 470 GLU H 97A CB CG CD OE1 OE2 REMARK 470 GLY H 246 CA C O REMARK 470 ILE I 29 CG2 REMARK 470 GLU I 43 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN H 78 O HOH H 596 1.65 REMARK 500 NH1 ARG H 165 O MET H 180 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER L 1E O GLU H 146 5645 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER H 195 CA SER H 195 CB 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 1A N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG L 4 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 GLU L 8 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 LYS L 9 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 GLU L 13 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 GLU L 13 CG - CD - OE2 ANGL. DEV. = 12.2 DEGREES REMARK 500 GLU L 14C CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 GLU L 14C OE1 - CD - OE2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG L 14D NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG L 14D NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 GLU L 14H OE1 - CD - OE2 ANGL. DEV. = 10.8 DEGREES REMARK 500 GLU L 14H CG - CD - OE2 ANGL. DEV. = -14.7 DEGREES REMARK 500 SER H 27 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG H 35 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG H 35 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG H 35 NE - CZ - NH1 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG H 35 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU H 61 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG H 67 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 HIS H 71 CE1 - NE2 - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG H 73 CG - CD - NE ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG H 73 NE - CZ - NH1 ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG H 73 NE - CZ - NH2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG H 77A C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG H 77A CD - NE - CZ ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG H 77A NH1 - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG H 77A NE - CZ - NH1 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG H 77A NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASN H 78 CB - CG - OD1 ANGL. DEV. = -13.1 DEGREES REMARK 500 GLU H 86 CG - CD - OE2 ANGL. DEV. = 12.5 DEGREES REMARK 500 TYR H 89 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR H 94 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG H 97 CA - C - O ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG H 101 CD - NE - CZ ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG H 101 NH1 - CZ - NH2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG H 101 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG H 101 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP H 116 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LEU H 123 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 GLU H 127 OE1 - CD - OE2 ANGL. DEV. = -8.5 DEGREES REMARK 500 GLU H 146 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 GLU H 146 CG - CD - OE2 ANGL. DEV. = -16.4 DEGREES REMARK 500 THR H 147 CA - CB - CG2 ANGL. DEV. = 8.7 DEGREES REMARK 500 GLN H 151 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 GLN H 151 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 VAL H 154 CA - CB - CG1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG H 165 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG H 175 CD - NE - CZ ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG H 175 NE - CZ - NH1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG H 175 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 72 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 1E -86.54 -81.71 REMARK 500 ASP L 1A 34.66 -79.46 REMARK 500 PHE L 7 -100.58 -121.63 REMARK 500 ASP L 14L 100.49 75.33 REMARK 500 ARG H 50 -13.28 -140.22 REMARK 500 TYR H 60A 88.40 -160.14 REMARK 500 ASN H 60G 75.48 -156.13 REMARK 500 ARG H 77A -62.88 -29.07 REMARK 500 ARG H 97 78.99 -59.23 REMARK 500 GLU H 97A 80.01 30.73 REMARK 500 ASN H 98 -42.41 -164.83 REMARK 500 SER H 115 -167.67 -162.45 REMARK 500 SER H 214 -69.48 -108.95 REMARK 500 CYS I 16 -75.64 -111.13 REMARK 500 SER I 19 40.61 -96.94 REMARK 500 LEU I 30 79.02 -68.92 REMARK 500 ASN I 52 48.72 -91.72 REMARK 500 ASN I 53 -176.70 171.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 206 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 4HTC L 1H 14N UNP P00734 THRB_HUMAN 328 363 DBREF 4HTC H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 4HTC I 1 65 UNP P09945 ITH3_HIRME 8 72 SEQADV 4HTC LYS I 47 UNP P09945 ASN 54 CONFLICT SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 65 ILE THR TYR THR ASP CYS THR GLU SER GLY GLN ASN LEU SEQRES 2 I 65 CYS LEU CYS GLU GLY SER ASN VAL CYS GLY LYS GLY ASN SEQRES 3 I 65 LYS CYS ILE LEU GLY SER ASN GLY LYS GLY ASN GLN CYS SEQRES 4 I 65 VAL THR GLY GLU GLY THR PRO LYS PRO GLU SER HIS ASN SEQRES 5 I 65 ASN GLY ASP PHE GLU GLU ILE PRO GLU GLU TYR LEU GLN MODRES 4HTC ASN H 60G ASN GLYCOSYLATION SITE HET NAG H 400 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *262(H2 O) HELIX 1 HH1 PRO I 46 HIS I 51 10POLYPROLINE HELIX 6 SHEET 1 HB1 2 CYS I 14 CYS I 16 0 SHEET 2 HB1 2 ASN I 20 CYS I 22 -1 SHEET 1 HB2 2 LYS I 27 LEU I 30 0 SHEET 2 HB2 2 GLY I 36 VAL I 40 -1 SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.07 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.10 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.10 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.02 SSBOND 5 CYS I 6 CYS I 14 1555 1555 2.01 SSBOND 6 CYS I 16 CYS I 28 1555 1555 2.07 SSBOND 7 CYS I 22 CYS I 39 1555 1555 2.05 LINK ND2 ASN H 60G C1 NAG H 400 1555 1555 1.58 CISPEP 1 SER H 36A PRO H 37 0 -0.32 SITE 1 CAT 3 HIS H 57 ASP H 102 SER H 195 CRYST1 90.540 90.540 132.040 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007573 0.00000