PDB Short entry for 4I6J HEADER TRANSCRIPTION 29-NOV-12 4I6J TITLE A UBIQUITIN LIGASE-SUBSTRATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-544; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: F-BOX/LRR-REPEAT PROTEIN 3; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: F-BOX AND LEUCINE-RICH REPEAT PROTEIN 3A, F-BOX/LRR-REPEAT COMPND 10 PROTEIN 3A; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: CYCLIN-A/CDK2-ASSOCIATED PROTEIN P19, ORGAN OF CORTI PROTEIN COMPND 16 2, OCP-2, ORGAN OF CORTI PROTEIN II, OCP-II, RNA POLYMERASE II COMPND 17 ELONGATION FACTOR-LIKE PROTEIN, SIII, TRANSCRIPTION ELONGATION FACTOR COMPND 18 B, P19A, P19SKP1; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CRY2, KIAA0658; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: FBXL3, FBL3A, FBXL3A; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: SKP1, EMC19, OCP2, SKP1A, TCEB1L; SOURCE 22 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 23 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CIRCADIAN CLOCK, UBIQUITINATION, LRR, F-BOX, PHOTOLYASE FOLD, KEYWDS 2 PERIODS, NUCLEUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.XING,L.BUSINO,T.R.HINDS,S.T.MARIONNI,N.H.SAIFEE,M.F.BUSH,M.PAGANO, AUTHOR 2 N.ZHENG REVDAT 2 01-MAY-13 4I6J 1 JRNL REVDAT 1 13-MAR-13 4I6J 0 JRNL AUTH W.XING,L.BUSINO,T.R.HINDS,S.T.MARIONNI,N.H.SAIFEE,M.F.BUSH, JRNL AUTH 2 M.PAGANO,N.ZHENG JRNL TITL SCFFBXL3 UBIQUITIN LIGASE TARGETS CRYPTOCHROMES AT THEIR JRNL TITL 2 COFACTOR POCKET. JRNL REF NATURE V. 496 64 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23503662 JRNL DOI 10.1038/NATURE11964 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5290 - 6.3440 0.98 2802 151 0.1740 0.1961 REMARK 3 2 6.3440 - 5.0373 1.00 2729 144 0.1898 0.2085 REMARK 3 3 5.0373 - 4.4010 1.00 2749 124 0.1616 0.2157 REMARK 3 4 4.4010 - 3.9989 1.00 2676 164 0.1772 0.2286 REMARK 3 5 3.9989 - 3.7124 1.00 2682 148 0.1860 0.2483 REMARK 3 6 3.7124 - 3.4936 1.00 2662 142 0.2027 0.3001 REMARK 3 7 3.4936 - 3.3186 1.00 2666 145 0.2264 0.3316 REMARK 3 8 3.3186 - 3.1742 1.00 2711 134 0.2429 0.3342 REMARK 3 9 3.1742 - 3.0520 1.00 2626 138 0.2489 0.3404 REMARK 3 10 3.0520 - 2.9467 1.00 2698 141 0.2671 0.3720 REMARK 3 11 2.9467 - 2.8546 1.00 2624 147 0.2594 0.3488 REMARK 3 12 2.8546 - 2.7730 1.00 2683 143 0.2538 0.3938 REMARK 3 13 2.7730 - 2.7000 1.00 2673 138 0.2579 0.3195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.51920 REMARK 3 B22 (A**2) : 3.51920 REMARK 3 B33 (A**2) : -7.03840 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8488 REMARK 3 ANGLE : 1.290 11507 REMARK 3 CHIRALITY : 0.088 1259 REMARK 3 PLANARITY : 0.005 1471 REMARK 3 DIHEDRAL : 17.579 3139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-12. REMARK 100 THE RCSB ID CODE IS RCSB076366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : 0.35600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR-SAD REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE, 13-14% REMARK 280 PEG3350 7% ACETONITRILE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.57067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.14133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.14133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.57067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 SER A 15 REMARK 465 MET A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 ASP A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 252 REMARK 465 GLU A 253 REMARK 465 ARG A 254 REMARK 465 PRO A 255 REMARK 465 LEU A 528 REMARK 465 SER A 529 REMARK 465 HIS A 530 REMARK 465 PRO A 531 REMARK 465 VAL A 532 REMARK 465 ALA A 533 REMARK 465 GLU A 534 REMARK 465 PRO A 535 REMARK 465 GLY A 536 REMARK 465 SER A 537 REMARK 465 SER A 538 REMARK 465 GLN A 539 REMARK 465 ALA A 540 REMARK 465 GLY A 541 REMARK 465 SER A 542 REMARK 465 ILE A 543 REMARK 465 SER A 544 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 ARG B 10 REMARK 465 ASN B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 GLY B 16 REMARK 465 THR B 17 REMARK 465 ALA B 18 REMARK 465 GLU B 19 REMARK 465 LYS B 20 REMARK 465 SER B 21 REMARK 465 LYS B 22 REMARK 465 LYS B 23 REMARK 465 LEU B 24 REMARK 465 ARG B 25 REMARK 465 THR B 26 REMARK 465 THR B 27 REMARK 465 ASN B 28 REMARK 465 GLU B 29 REMARK 465 HIS B 30 REMARK 465 SER B 31 REMARK 465 GLN B 32 REMARK 465 THR B 33 REMARK 465 CYS B 34 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 34 REMARK 465 GLY C 35 REMARK 465 MET C 36 REMARK 465 ASP C 37 REMARK 465 ASP C 38 REMARK 465 GLU C 39 REMARK 465 GLY C 40 REMARK 465 ASP C 41 REMARK 465 ASP C 42 REMARK 465 ASP C 43 REMARK 465 HIS C 65 REMARK 465 LYS C 66 REMARK 465 ASP C 67 REMARK 465 ASP C 68 REMARK 465 PRO C 69 REMARK 465 PRO C 70 REMARK 465 PRO C 71 REMARK 465 PRO C 72 REMARK 465 GLU C 73 REMARK 465 ASP C 74 REMARK 465 ASP C 75 REMARK 465 GLU C 76 REMARK 465 ASN C 77 REMARK 465 LYS C 78 REMARK 465 GLU C 79 REMARK 465 LYS C 80 REMARK 465 ARG C 81 REMARK 465 THR C 82 REMARK 465 ASP C 83 REMARK 465 ASP C 84 REMARK 465 LYS C 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 258 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 227 O HOH B 545 1.86 REMARK 500 O LYS B 286 O HOH B 516 1.86 REMARK 500 O HOH B 506 O HOH B 514 1.88 REMARK 500 OH TYR B 50 OD2 ASP C 117 1.92 REMARK 500 O ASN B 360 O HOH B 508 1.94 REMARK 500 O HOH B 543 O HOH B 546 1.97 REMARK 500 O PRO B 302 O HOH B 537 2.02 REMARK 500 O HOH A 671 O HOH A 672 2.06 REMARK 500 O ARG A 486 O HOH A 630 2.07 REMARK 500 N ARG B 251 O HOH B 522 2.07 REMARK 500 OG SER A 189 O HOH A 669 2.07 REMARK 500 N ASN B 288 O HOH B 531 2.08 REMARK 500 O LEU A 262 O HOH A 611 2.09 REMARK 500 O HOH A 664 O HOH A 677 2.10 REMARK 500 O ASP B 278 O HOH B 557 2.10 REMARK 500 O ARG B 357 O HOH B 549 2.11 REMARK 500 O ASP C 89 N LEU C 93 2.11 REMARK 500 OG SER A 23 O ALA A 42 2.11 REMARK 500 NZ LYS A 295 OG SER A 298 2.12 REMARK 500 CD2 LEU B 202 O HOH B 545 2.12 REMARK 500 OE1 GLU B 239 O HOH B 532 2.12 REMARK 500 O HOH A 656 O HOH A 680 2.13 REMARK 500 CA ASP B 278 O HOH B 557 2.15 REMARK 500 O GLU B 350 O HOH B 548 2.15 REMARK 500 OH TYR B 292 O HOH B 511 2.15 REMARK 500 CB ASP B 278 O HOH B 557 2.16 REMARK 500 OH TYR A 315 OD2 ASP A 407 2.16 REMARK 500 NE2 HIS B 159 O HOH B 538 2.16 REMARK 500 O HOH A 674 O HOH A 683 2.17 REMARK 500 OE1 GLU A 145 O HOH A 651 2.17 REMARK 500 NH1 ARG B 256 OD1 ASP B 258 2.17 REMARK 500 N GLY A 224 O HOH A 644 2.17 REMARK 500 O VAL C 25 N ILE C 27 2.17 REMARK 500 N ARG A 486 O HOH A 630 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 -69.84 -128.33 REMARK 500 LYS A 29 -149.06 -101.40 REMARK 500 ASP A 35 61.34 38.60 REMARK 500 ARG A 44 99.18 -51.90 REMARK 500 ALA A 46 -167.66 76.93 REMARK 500 ARG A 47 -152.85 74.31 REMARK 500 SER A 64 0.46 -55.44 REMARK 500 ASN A 88 17.52 53.03 REMARK 500 SER A 89 -166.09 -112.73 REMARK 500 VAL A 101 -39.96 -141.18 REMARK 500 MET A 134 0.28 -61.87 REMARK 500 LYS A 136 -71.90 -49.27 REMARK 500 GLU A 137 63.59 -67.82 REMARK 500 ALA A 138 1.13 -179.48 REMARK 500 GLN A 191 -61.20 -19.16 REMARK 500 SER A 195 -3.90 -54.81 REMARK 500 CYS A 196 19.06 -161.18 REMARK 500 GLU A 202 -124.08 47.64 REMARK 500 ASN A 203 24.60 -73.54 REMARK 500 GLU A 221 -97.40 -45.50 REMARK 500 VAL A 249 96.52 -49.45 REMARK 500 ALA A 250 -56.81 -156.55 REMARK 500 ASN A 258 -107.02 -86.36 REMARK 500 ALA A 259 -44.10 163.68 REMARK 500 ALA A 264 96.48 -57.52 REMARK 500 VAL A 294 -67.01 -100.77 REMARK 500 ARG A 296 -157.67 67.60 REMARK 500 ASN A 297 84.02 -28.98 REMARK 500 ASN A 341 84.41 -159.35 REMARK 500 THR A 384 -104.25 -94.90 REMARK 500 ASP A 387 -75.16 -134.04 REMARK 500 ASP A 441 77.31 -164.19 REMARK 500 LEU A 451 68.62 -118.34 REMARK 500 LYS A 453 8.43 -59.12 REMARK 500 ARG A 460 -35.81 -36.71 REMARK 500 GLU A 464 71.21 -160.48 REMARK 500 VAL A 482 -71.10 -123.51 REMARK 500 PRO A 487 133.85 -37.94 REMARK 500 TYR A 512 108.26 -58.28 REMARK 500 VAL A 525 124.65 -6.48 REMARK 500 GLU A 526 168.70 -40.74 REMARK 500 LEU B 39 -94.91 -5.77 REMARK 500 LEU B 40 -91.83 -132.41 REMARK 500 GLN B 41 -44.40 164.37 REMARK 500 THR B 88 -9.96 -149.51 REMARK 500 LEU B 91 -159.59 -96.71 REMARK 500 ASP B 118 -167.91 -78.86 REMARK 500 ALA B 148 -118.70 -143.55 REMARK 500 MET B 205 63.52 -160.29 REMARK 500 LEU B 226 98.81 -56.81 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE B 303 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I6E RELATED DB: PDB REMARK 900 RELATED ID: 4I6G RELATED DB: PDB DBREF 4I6J A 1 544 UNP Q9R194 CRY2_MOUSE 1 544 DBREF 4I6J B 1 428 UNP Q9UKT7 FBXL3_HUMAN 1 428 DBREF 4I6J C 1 163 UNP P63208 SKP1_HUMAN 1 163 SEQRES 1 A 544 MET ALA ALA ALA ALA VAL VAL ALA ALA THR VAL PRO ALA SEQRES 2 A 544 GLN SER MET GLY ALA ASP GLY ALA SER SER VAL HIS TRP SEQRES 3 A 544 PHE ARG LYS GLY LEU ARG LEU HIS ASP ASN PRO ALA LEU SEQRES 4 A 544 LEU ALA ALA VAL ARG GLY ALA ARG CYS VAL ARG CYS VAL SEQRES 5 A 544 TYR ILE LEU ASP PRO TRP PHE ALA ALA SER SER SER VAL SEQRES 6 A 544 GLY ILE ASN ARG TRP ARG PHE LEU LEU GLN SER LEU GLU SEQRES 7 A 544 ASP LEU ASP THR SER LEU ARG LYS LEU ASN SER ARG LEU SEQRES 8 A 544 PHE VAL VAL ARG GLY GLN PRO ALA ASP VAL PHE PRO ARG SEQRES 9 A 544 LEU PHE LYS GLU TRP GLY VAL THR ARG LEU THR PHE GLU SEQRES 10 A 544 TYR ASP SER GLU PRO PHE GLY LYS GLU ARG ASP ALA ALA SEQRES 11 A 544 ILE MET LYS MET ALA LYS GLU ALA GLY VAL GLU VAL VAL SEQRES 12 A 544 THR GLU ASN SER HIS THR LEU TYR ASP LEU ASP ARG ILE SEQRES 13 A 544 ILE GLU LEU ASN GLY GLN LYS PRO PRO LEU THR TYR LYS SEQRES 14 A 544 ARG PHE GLN ALA LEU ILE SER ARG MET GLU LEU PRO LYS SEQRES 15 A 544 LYS PRO ALA VAL ALA VAL SER SER GLN GLN MET GLU SER SEQRES 16 A 544 CYS ARG ALA GLU ILE GLN GLU ASN HIS ASP ASP THR TYR SEQRES 17 A 544 GLY VAL PRO SER LEU GLU GLU LEU GLY PHE PRO THR GLU SEQRES 18 A 544 GLY LEU GLY PRO ALA VAL TRP GLN GLY GLY GLU THR GLU SEQRES 19 A 544 ALA LEU ALA ARG LEU ASP LYS HIS LEU GLU ARG LYS ALA SEQRES 20 A 544 TRP VAL ALA ASN TYR GLU ARG PRO ARG MET ASN ALA ASN SEQRES 21 A 544 SER LEU LEU ALA SER PRO THR GLY LEU SER PRO TYR LEU SEQRES 22 A 544 ARG PHE GLY CYS LEU SER CYS ARG LEU PHE TYR TYR ARG SEQRES 23 A 544 LEU TRP ASP LEU TYR LYS LYS VAL LYS ARG ASN SER THR SEQRES 24 A 544 PRO PRO LEU SER LEU PHE GLY GLN LEU LEU TRP ARG GLU SEQRES 25 A 544 PHE PHE TYR THR ALA ALA THR ASN ASN PRO ARG PHE ASP SEQRES 26 A 544 ARG MET GLU GLY ASN PRO ILE CYS ILE GLN ILE PRO TRP SEQRES 27 A 544 ASP ARG ASN PRO GLU ALA LEU ALA LYS TRP ALA GLU GLY SEQRES 28 A 544 LYS THR GLY PHE PRO TRP ILE ASP ALA ILE MET THR GLN SEQRES 29 A 544 LEU ARG GLN GLU GLY TRP ILE HIS HIS LEU ALA ARG HIS SEQRES 30 A 544 ALA VAL ALA CYS PHE LEU THR ARG GLY ASP LEU TRP VAL SEQRES 31 A 544 SER TRP GLU SER GLY VAL ARG VAL PHE ASP GLU LEU LEU SEQRES 32 A 544 LEU ASP ALA ASP PHE SER VAL ASN ALA GLY SER TRP MET SEQRES 33 A 544 TRP LEU SER CYS SER ALA PHE PHE GLN GLN PHE PHE HIS SEQRES 34 A 544 CYS TYR CYS PRO VAL GLY PHE GLY ARG ARG THR ASP PRO SEQRES 35 A 544 SER GLY ASP TYR ILE ARG ARG TYR LEU PRO LYS LEU LYS SEQRES 36 A 544 GLY PHE PRO SER ARG TYR ILE TYR GLU PRO TRP ASN ALA SEQRES 37 A 544 PRO GLU SER VAL GLN LYS ALA ALA LYS CYS ILE ILE GLY SEQRES 38 A 544 VAL ASP TYR PRO ARG PRO ILE VAL ASN HIS ALA GLU THR SEQRES 39 A 544 SER ARG LEU ASN ILE GLU ARG MET LYS GLN ILE TYR GLN SEQRES 40 A 544 GLN LEU SER ARG TYR ARG GLY LEU CYS LEU LEU ALA SER SEQRES 41 A 544 VAL PRO SER CYS VAL GLU ASP LEU SER HIS PRO VAL ALA SEQRES 42 A 544 GLU PRO GLY SER SER GLN ALA GLY SER ILE SER SEQRES 1 B 428 MET LYS ARG GLY GLY ARG ASP SER ASP ARG ASN SER SER SEQRES 2 B 428 GLU GLU GLY THR ALA GLU LYS SER LYS LYS LEU ARG THR SEQRES 3 B 428 THR ASN GLU HIS SER GLN THR CYS ASP TRP GLY ASN LEU SEQRES 4 B 428 LEU GLN ASP ILE ILE LEU GLN VAL PHE LYS TYR LEU PRO SEQRES 5 B 428 LEU LEU ASP ARG ALA HIS ALA SER GLN VAL CYS ARG ASN SEQRES 6 B 428 TRP ASN GLN VAL PHE HIS MET PRO ASP LEU TRP ARG CYS SEQRES 7 B 428 PHE GLU PHE GLU LEU ASN GLN PRO ALA THR SER TYR LEU SEQRES 8 B 428 LYS ALA THR HIS PRO GLU LEU ILE LYS GLN ILE ILE LYS SEQRES 9 B 428 ARG HIS SER ASN HIS LEU GLN TYR VAL SER PHE LYS VAL SEQRES 10 B 428 ASP SER SER LYS GLU SER ALA GLU ALA ALA CYS ASP ILE SEQRES 11 B 428 LEU SER GLN LEU VAL ASN CYS SER LEU LYS THR LEU GLY SEQRES 12 B 428 LEU ILE SER THR ALA ARG PRO SER PHE MET ASP LEU PRO SEQRES 13 B 428 LYS SER HIS PHE ILE SER ALA LEU THR VAL VAL PHE VAL SEQRES 14 B 428 ASN SER LYS SER LEU SER SER LEU LYS ILE ASP ASP THR SEQRES 15 B 428 PRO VAL ASP ASP PRO SER LEU LYS VAL LEU VAL ALA ASN SEQRES 16 B 428 ASN SER ASP THR LEU LYS LEU LEU LYS MET SER SER CYS SEQRES 17 B 428 PRO HIS VAL SER PRO ALA GLY ILE LEU CYS VAL ALA ASP SEQRES 18 B 428 GLN CYS HIS GLY LEU ARG GLU LEU ALA LEU ASN TYR HIS SEQRES 19 B 428 LEU LEU SER ASP GLU LEU LEU LEU ALA LEU SER SER GLU SEQRES 20 B 428 LYS HIS VAL ARG LEU GLU HIS LEU ARG ILE ASP VAL VAL SEQRES 21 B 428 SER GLU ASN PRO GLY GLN THR HIS PHE HIS THR ILE GLN SEQRES 22 B 428 LYS SER SER TRP ASP ALA PHE ILE ARG HIS SER PRO LYS SEQRES 23 B 428 VAL ASN LEU VAL MET TYR PHE PHE LEU TYR GLU GLU GLU SEQRES 24 B 428 PHE ASP PRO PHE PHE ARG TYR GLU ILE PRO ALA THR HIS SEQRES 25 B 428 LEU TYR PHE GLY ARG SER VAL SER LYS ASP VAL LEU GLY SEQRES 26 B 428 ARG VAL GLY MET THR CYS PRO ARG LEU VAL GLU LEU VAL SEQRES 27 B 428 VAL CYS ALA ASN GLY LEU ARG PRO LEU ASP GLU GLU LEU SEQRES 28 B 428 ILE ARG ILE ALA GLU ARG CYS LYS ASN LEU SER ALA ILE SEQRES 29 B 428 GLY LEU GLY GLU CYS GLU VAL SER CYS SER ALA PHE VAL SEQRES 30 B 428 GLU PHE VAL LYS MET CYS GLY GLY ARG LEU SER GLN LEU SEQRES 31 B 428 SER ILE MET GLU GLU VAL LEU ILE PRO ASP GLN LYS TYR SEQRES 32 B 428 SER LEU GLU GLN ILE HIS TRP GLU VAL SER LYS HIS LEU SEQRES 33 B 428 GLY ARG VAL TRP PHE PRO ASP MET MET PRO THR TRP SEQRES 1 C 163 MET PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE SEQRES 2 C 163 PHE GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR SEQRES 3 C 163 ILE LYS THR MET LEU GLU ASP LEU GLY MET ASP ASP GLU SEQRES 4 C 163 GLY ASP ASP ASP PRO VAL PRO LEU PRO ASN VAL ASN ALA SEQRES 5 C 163 ALA ILE LEU LYS LYS VAL ILE GLN TRP CYS THR HIS HIS SEQRES 6 C 163 LYS ASP ASP PRO PRO PRO PRO GLU ASP ASP GLU ASN LYS SEQRES 7 C 163 GLU LYS ARG THR ASP ASP ILE PRO VAL TRP ASP GLN GLU SEQRES 8 C 163 PHE LEU LYS VAL ASP GLN GLY THR LEU PHE GLU LEU ILE SEQRES 9 C 163 LEU ALA ALA ASN TYR LEU ASP ILE LYS GLY LEU LEU ASP SEQRES 10 C 163 VAL THR CYS LYS THR VAL ALA ASN MET ILE LYS GLY LYS SEQRES 11 C 163 THR PRO GLU GLU ILE ARG LYS THR PHE ASN ILE LYS ASN SEQRES 12 C 163 ASP PHE THR GLU GLU GLU GLU ALA GLN VAL ARG LYS GLU SEQRES 13 C 163 ASN GLN TRP CYS GLU GLU LYS FORMUL 4 HOH *156(H2 O) HELIX 1 1 ASN A 36 ARG A 44 1 9 HELIX 2 2 GLY A 66 LYS A 86 1 21 HELIX 3 3 VAL A 101 GLY A 110 1 10 HELIX 4 4 GLU A 121 GLU A 137 1 17 HELIX 5 5 ASP A 152 ASN A 160 1 9 HELIX 6 6 THR A 167 MET A 178 1 12 HELIX 7 7 SER A 190 SER A 195 1 6 HELIX 8 8 GLN A 201 TYR A 208 5 8 HELIX 9 9 GLY A 231 LEU A 243 1 13 HELIX 10 10 GLU A 244 VAL A 249 1 6 HELIX 11 11 ALA A 259 LEU A 263 5 5 HELIX 12 12 LEU A 269 GLY A 276 1 8 HELIX 13 13 SER A 279 ARG A 296 1 18 HELIX 14 14 PRO A 301 LEU A 304 5 4 HELIX 15 15 PHE A 305 THR A 319 1 15 HELIX 16 16 ASN A 341 GLU A 350 1 10 HELIX 17 17 PHE A 355 GLY A 369 1 15 HELIX 18 18 HIS A 372 THR A 384 1 13 HELIX 19 19 SER A 391 LEU A 403 1 13 HELIX 20 20 ASP A 407 SER A 419 1 13 HELIX 21 21 VAL A 434 ASP A 441 1 8 HELIX 22 22 TYR A 446 LEU A 451 1 6 HELIX 23 23 PRO A 452 LYS A 455 5 4 HELIX 24 24 PRO A 458 TYR A 463 1 6 HELIX 25 25 GLU A 464 ALA A 468 5 5 HELIX 26 26 PRO A 469 ALA A 476 1 8 HELIX 27 27 ASN A 490 ARG A 511 1 22 HELIX 28 28 GLN B 41 LYS B 49 1 9 HELIX 29 29 PRO B 52 SER B 60 1 9 HELIX 30 30 CYS B 63 GLN B 68 1 6 HELIX 31 31 MET B 72 TRP B 76 5 5 HELIX 32 32 HIS B 95 SER B 107 1 13 HELIX 33 33 SER B 120 SER B 132 1 13 HELIX 34 34 PRO B 150 LEU B 155 5 6 HELIX 35 35 PRO B 156 SER B 171 1 16 HELIX 36 36 ASP B 185 SER B 197 1 13 HELIX 37 37 SER B 212 CYS B 223 1 12 HELIX 38 38 HIS B 234 LEU B 236 5 3 HELIX 39 39 SER B 237 SER B 246 1 10 HELIX 40 40 GLN B 273 SER B 284 1 12 HELIX 41 41 SER B 320 MET B 329 1 10 HELIX 42 42 LEU B 347 CYS B 358 1 12 HELIX 43 43 CYS B 373 CYS B 383 1 11 HELIX 44 44 GLY B 384 LEU B 387 5 4 HELIX 45 45 SER B 404 GLY B 417 1 14 HELIX 46 46 ILE C 54 TRP C 61 1 8 HELIX 47 47 ASP C 96 LEU C 110 1 15 HELIX 48 48 GLY C 114 LYS C 128 1 15 HELIX 49 49 THR C 131 THR C 138 1 8 HELIX 50 50 GLU C 147 TRP C 159 1 13 SHEET 1 A 5 LEU A 91 ARG A 95 0 SHEET 2 A 5 VAL A 49 LEU A 55 1 N CYS A 51 O PHE A 92 SHEET 3 A 5 SER A 23 TRP A 26 1 N HIS A 25 O ARG A 50 SHEET 4 A 5 ARG A 113 GLU A 117 1 O THR A 115 N TRP A 26 SHEET 5 A 5 GLU A 141 GLU A 145 1 O GLU A 141 N LEU A 114 SHEET 1 B12 CYS B 78 LEU B 83 0 SHEET 2 B12 TYR B 112 VAL B 117 1 O LYS B 116 N PHE B 81 SHEET 3 B12 THR B 141 SER B 146 1 O ILE B 145 N VAL B 117 SHEET 4 B12 SER B 176 LYS B 178 1 O LYS B 178 N LEU B 144 SHEET 5 B12 LEU B 202 LYS B 204 1 O LYS B 204 N LEU B 177 SHEET 6 B12 GLU B 228 ASN B 232 1 O ALA B 230 N LEU B 203 SHEET 7 B12 HIS B 254 VAL B 260 1 O ARG B 256 N LEU B 229 SHEET 8 B12 ASN B 288 PHE B 294 1 O PHE B 294 N VAL B 259 SHEET 9 B12 HIS B 312 PHE B 315 1 O TYR B 314 N PHE B 293 SHEET 10 B12 GLU B 336 VAL B 339 1 O VAL B 338 N PHE B 315 SHEET 11 B12 ALA B 363 LEU B 366 1 O GLY B 365 N VAL B 339 SHEET 12 B12 GLN B 389 ILE B 392 1 O SER B 391 N LEU B 366 SHEET 1 C 2 VAL B 371 SER B 372 0 SHEET 2 C 2 LEU B 397 ILE B 398 1 O ILE B 398 N VAL B 371 SHEET 1 D 2 ILE C 4 LYS C 5 0 SHEET 2 D 2 GLU C 15 VAL C 16 -1 O VAL C 16 N ILE C 4 SSBOND 1 CYS A 430 CYS B 340 1555 1555 2.04 CISPEP 1 PRO C 44 VAL C 45 0 -2.00 CISPEP 2 VAL C 87 TRP C 88 0 -4.72 CRYST1 125.389 125.389 145.712 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007975 0.004604 0.000000 0.00000 SCALE2 0.000000 0.009209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006863 0.00000