PDB Short entry for 4I9E HEADER GENE REGULATION 05-DEC-12 4I9E TITLE CRYSTAL STRUCTURE OF ASPARTYL PHOSPHATE PHOSPHATASE F FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR ASPARTATE PHOSPHATASE F; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU37460, RAPF, YWHJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX KEYWDS TRP REPEAT DOMAIN, COMA INHIBITOR, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR A.MARINA,F.GALLEGO REVDAT 3 20-MAR-24 4I9E 1 HETSYN REVDAT 2 29-JUL-20 4I9E 1 COMPND REMARK SEQADV HET REVDAT 2 2 1 HETNAM FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 20-NOV-13 4I9E 0 JRNL AUTH F.GALLEGO DEL SOL,A.MARINA JRNL TITL STRUCTURAL BASIS OF RAP PHOSPHATASE INHIBITION BY PHR JRNL TITL 2 PEPTIDES JRNL REF PLOS BIOL. V. 11 01511 2013 JRNL REFN ISSN 1544-9173 JRNL PMID 23526880 JRNL DOI 10.1371/JOURNAL.PBIO.1001511 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 1.39000 REMARK 3 B12 (A**2) : -0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6736 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9067 ; 1.793 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 780 ; 7.790 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 362 ;39.737 ;24.116 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1240 ;18.905 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;22.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 924 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5161 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3318 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4690 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 291 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3995 ; 1.201 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6194 ; 1.966 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3171 ; 2.784 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2873 ; 4.148 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0890 28.7948 30.6308 REMARK 3 T TENSOR REMARK 3 T11: -0.0137 T22: -0.0040 REMARK 3 T33: 0.0141 T12: 0.0103 REMARK 3 T13: -0.0141 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.7148 L22: 0.2212 REMARK 3 L33: 0.1130 L12: -0.2433 REMARK 3 L13: -0.2302 L23: 0.1517 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.1228 S13: -0.0068 REMARK 3 S21: -0.0474 S22: -0.0787 S23: -0.0144 REMARK 3 S31: -0.0179 S32: -0.0217 S33: 0.0297 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 381 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4762 42.9526 59.5548 REMARK 3 T TENSOR REMARK 3 T11: 0.0246 T22: -0.0077 REMARK 3 T33: -0.0303 T12: 0.0317 REMARK 3 T13: -0.0183 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.6014 L22: 0.4663 REMARK 3 L33: 0.1424 L12: 0.2045 REMARK 3 L13: 0.0123 L23: -0.0066 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: -0.1363 S13: 0.0317 REMARK 3 S21: 0.0971 S22: 0.0524 S23: -0.0324 REMARK 3 S31: -0.0110 S32: 0.0185 S33: 0.1147 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 674 REMARK 3 RESIDUE RANGE : B 501 B 632 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7498 33.1744 42.7318 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.0792 REMARK 3 T33: 0.1148 T12: -0.0254 REMARK 3 T13: -0.0044 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.5824 L22: 0.3146 REMARK 3 L33: 0.0834 L12: -0.3789 REMARK 3 L13: -0.1331 L23: 0.0265 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0307 S13: -0.0464 REMARK 3 S21: 0.0058 S22: 0.0071 S23: -0.0889 REMARK 3 S31: -0.0082 S32: 0.1165 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3320 31.4862 46.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0001 REMARK 3 T33: 0.0000 T12: 0.0001 REMARK 3 T13: 0.0004 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4725 L22: 2.1603 REMARK 3 L33: 19.7448 L12: -0.0185 REMARK 3 L13: -0.3271 L23: 6.5052 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.0778 S13: -0.1171 REMARK 3 S21: 0.0788 S22: 0.3326 S23: -0.0880 REMARK 3 S31: 0.0329 S32: 0.9386 S33: -0.3185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4I9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-07; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-4; ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931; 0.9790, 0.9791, 0.9074 REMARK 200 MONOCHROMATOR : TORODIAL FOCUSING MIRROR; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.249 REMARK 200 RESOLUTION RANGE LOW (A) : 101.535 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : 0.64400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M AMMONIUM SULPHATE, 0.5M LITHIUM REMARK 280 CHLORIDE, PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.71833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.43667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.43667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.71833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 VAL A 381 CG1 CG2 REMARK 470 VAL B 4 CG1 CG2 REMARK 470 ILE B 5 CG1 CG2 CD1 REMARK 470 SER B 6 OG REMARK 470 SER B 7 OG REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 VAL B 381 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 16 O HOH A 660 1.70 REMARK 500 NH2 ARG B 137 OE2 GLU B 173 2.05 REMARK 500 OE1 GLU A 16 O HOH A 628 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 318 CG GLU A 318 CD 0.095 REMARK 500 SER B 6 CA SER B 6 CB 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 62 CB - CG - CD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -64.54 -93.43 REMARK 500 VAL A 4 -71.38 125.78 REMARK 500 SER A 7 54.35 -159.17 REMARK 500 GLN A 42 51.94 -106.13 REMARK 500 MET A 43 90.34 -175.55 REMARK 500 GLU A 45 -144.53 -130.71 REMARK 500 ASP A 46 150.60 -38.41 REMARK 500 GLN A 92 53.02 -142.26 REMARK 500 GLU A 116 78.93 -100.57 REMARK 500 ALA A 176 60.20 6.07 REMARK 500 LYS A 196 10.02 83.01 REMARK 500 ASP A 279 -73.00 -37.05 REMARK 500 ASP A 297 92.26 -59.25 REMARK 500 VAL B 4 156.22 86.62 REMARK 500 SER B 6 163.18 90.22 REMARK 500 SER B 7 -18.91 -177.13 REMARK 500 PHE B 24 13.48 53.02 REMARK 500 GLU B 116 79.41 -104.99 REMARK 500 LYS B 135 -95.73 -0.11 REMARK 500 LYS B 135 -103.88 15.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 2 GLY A 3 -37.75 REMARK 500 VAL A 4 ILE A 5 -136.31 REMARK 500 GLU A 175 ALA A 176 -137.56 REMARK 500 ALA A 176 TYR A 177 139.24 REMARK 500 GLY B 3 VAL B 4 -145.93 REMARK 500 ILE B 5 SER B 6 42.07 REMARK 500 GLN B 47 ASP B 48 133.72 REMARK 500 VAL B 134 LYS B 135 145.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I9C RELATED DB: PDB DBREF 4I9E A 1 381 UNP P71002 RAPF_BACSU 1 381 DBREF 4I9E B 1 381 UNP P71002 RAPF_BACSU 1 381 SEQADV 4I9E GLY A -1 UNP P71002 EXPRESSION TAG SEQADV 4I9E ALA A 0 UNP P71002 EXPRESSION TAG SEQADV 4I9E GLY B -1 UNP P71002 EXPRESSION TAG SEQADV 4I9E ALA B 0 UNP P71002 EXPRESSION TAG SEQRES 1 A 383 GLY ALA MET THR GLY VAL ILE SER SER SER SER ILE GLY SEQRES 2 A 383 GLU LYS ILE ASN GLU TRP TYR MET TYR ILE ARG ARG PHE SEQRES 3 A 383 SER ILE PRO ASP ALA GLU TYR LEU ARG ARG GLU ILE LYS SEQRES 4 A 383 GLN GLU LEU ASP GLN MET GLU GLU ASP GLN ASP LEU HIS SEQRES 5 A 383 LEU TYR TYR SER LEU MET GLU PHE ARG HIS ASN LEU MET SEQRES 6 A 383 LEU GLU TYR LEU GLU PRO LEU GLU LYS MET ARG ILE GLU SEQRES 7 A 383 GLU GLN PRO ARG LEU SER ASP LEU LEU LEU GLU ILE ASP SEQRES 8 A 383 LYS LYS GLN ALA ARG LEU THR GLY LEU LEU GLU TYR TYR SEQRES 9 A 383 PHE ASN PHE PHE ARG GLY MET TYR GLU LEU ASP GLN ARG SEQRES 10 A 383 GLU TYR LEU SER ALA ILE LYS PHE PHE LYS LYS ALA GLU SEQRES 11 A 383 SER LYS LEU ILE PHE VAL LYS ASP ARG ILE GLU LYS ALA SEQRES 12 A 383 GLU PHE PHE PHE LYS MET SER GLU SER TYR TYR TYR MET SEQRES 13 A 383 LYS GLN THR TYR PHE SER MET ASP TYR ALA ARG GLN ALA SEQRES 14 A 383 TYR GLU ILE TYR LYS GLU HIS GLU ALA TYR ASN ILE ARG SEQRES 15 A 383 LEU LEU GLN CYS HIS SER LEU PHE ALA THR ASN PHE LEU SEQRES 16 A 383 ASP LEU LYS GLN TYR GLU ASP ALA ILE SER HIS PHE GLN SEQRES 17 A 383 LYS ALA TYR SER MET ALA GLU ALA GLU LYS GLN PRO GLN SEQRES 18 A 383 LEU MET GLY ARG THR LEU TYR ASN ILE GLY LEU CYS LYS SEQRES 19 A 383 ASN SER GLN SER GLN TYR GLU ASP ALA ILE PRO TYR PHE SEQRES 20 A 383 LYS ARG ALA ILE ALA VAL PHE GLU GLU SER ASN ILE LEU SEQRES 21 A 383 PRO SER LEU PRO GLN ALA TYR PHE LEU ILE THR GLN ILE SEQRES 22 A 383 HIS TYR LYS LEU GLY LYS ILE ASP LYS ALA HIS GLU TYR SEQRES 23 A 383 HIS SER LYS GLY MET ALA TYR SER GLN LYS ALA GLY ASP SEQRES 24 A 383 VAL ILE TYR LEU SER GLU PHE GLU PHE LEU LYS SER LEU SEQRES 25 A 383 TYR LEU SER GLY PRO ASP GLU GLU ALA ILE GLN GLY PHE SEQRES 26 A 383 PHE ASP PHE LEU GLU SER LYS MET LEU TYR ALA ASP LEU SEQRES 27 A 383 GLU ASP PHE ALA ILE ASP VAL ALA LYS TYR TYR HIS GLU SEQRES 28 A 383 ARG LYS ASN PHE GLN LYS ALA SER ALA TYR PHE LEU LYS SEQRES 29 A 383 VAL GLU GLN VAL ARG GLN LEU ILE GLN GLY GLY VAL SER SEQRES 30 A 383 LEU TYR GLU ILE GLU VAL SEQRES 1 B 383 GLY ALA MET THR GLY VAL ILE SER SER SER SER ILE GLY SEQRES 2 B 383 GLU LYS ILE ASN GLU TRP TYR MET TYR ILE ARG ARG PHE SEQRES 3 B 383 SER ILE PRO ASP ALA GLU TYR LEU ARG ARG GLU ILE LYS SEQRES 4 B 383 GLN GLU LEU ASP GLN MET GLU GLU ASP GLN ASP LEU HIS SEQRES 5 B 383 LEU TYR TYR SER LEU MET GLU PHE ARG HIS ASN LEU MET SEQRES 6 B 383 LEU GLU TYR LEU GLU PRO LEU GLU LYS MET ARG ILE GLU SEQRES 7 B 383 GLU GLN PRO ARG LEU SER ASP LEU LEU LEU GLU ILE ASP SEQRES 8 B 383 LYS LYS GLN ALA ARG LEU THR GLY LEU LEU GLU TYR TYR SEQRES 9 B 383 PHE ASN PHE PHE ARG GLY MET TYR GLU LEU ASP GLN ARG SEQRES 10 B 383 GLU TYR LEU SER ALA ILE LYS PHE PHE LYS LYS ALA GLU SEQRES 11 B 383 SER LYS LEU ILE PHE VAL LYS ASP ARG ILE GLU LYS ALA SEQRES 12 B 383 GLU PHE PHE PHE LYS MET SER GLU SER TYR TYR TYR MET SEQRES 13 B 383 LYS GLN THR TYR PHE SER MET ASP TYR ALA ARG GLN ALA SEQRES 14 B 383 TYR GLU ILE TYR LYS GLU HIS GLU ALA TYR ASN ILE ARG SEQRES 15 B 383 LEU LEU GLN CYS HIS SER LEU PHE ALA THR ASN PHE LEU SEQRES 16 B 383 ASP LEU LYS GLN TYR GLU ASP ALA ILE SER HIS PHE GLN SEQRES 17 B 383 LYS ALA TYR SER MET ALA GLU ALA GLU LYS GLN PRO GLN SEQRES 18 B 383 LEU MET GLY ARG THR LEU TYR ASN ILE GLY LEU CYS LYS SEQRES 19 B 383 ASN SER GLN SER GLN TYR GLU ASP ALA ILE PRO TYR PHE SEQRES 20 B 383 LYS ARG ALA ILE ALA VAL PHE GLU GLU SER ASN ILE LEU SEQRES 21 B 383 PRO SER LEU PRO GLN ALA TYR PHE LEU ILE THR GLN ILE SEQRES 22 B 383 HIS TYR LYS LEU GLY LYS ILE ASP LYS ALA HIS GLU TYR SEQRES 23 B 383 HIS SER LYS GLY MET ALA TYR SER GLN LYS ALA GLY ASP SEQRES 24 B 383 VAL ILE TYR LEU SER GLU PHE GLU PHE LEU LYS SER LEU SEQRES 25 B 383 TYR LEU SER GLY PRO ASP GLU GLU ALA ILE GLN GLY PHE SEQRES 26 B 383 PHE ASP PHE LEU GLU SER LYS MET LEU TYR ALA ASP LEU SEQRES 27 B 383 GLU ASP PHE ALA ILE ASP VAL ALA LYS TYR TYR HIS GLU SEQRES 28 B 383 ARG LYS ASN PHE GLN LYS ALA SER ALA TYR PHE LEU LYS SEQRES 29 B 383 VAL GLU GLN VAL ARG GLN LEU ILE GLN GLY GLY VAL SER SEQRES 30 B 383 LEU TYR GLU ILE GLU VAL HET GLC C 1 11 HET FRU C 2 12 HET GLC D 1 11 HET FRU D 2 12 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 FRU 2(C6 H12 O6) FORMUL 5 HOH *306(H2 O) HELIX 1 1 SER A 7 PHE A 24 1 18 HELIX 2 2 SER A 25 ASP A 41 1 17 HELIX 3 3 GLN A 47 GLU A 68 1 22 HELIX 4 4 PRO A 69 MET A 73 5 5 HELIX 5 5 ARG A 80 LYS A 91 1 12 HELIX 6 6 GLN A 92 GLN A 114 1 23 HELIX 7 7 GLU A 116 SER A 129 1 14 HELIX 8 8 LYS A 130 VAL A 134 5 5 HELIX 9 9 ASP A 136 MET A 154 1 19 HELIX 10 10 GLN A 156 HIS A 174 1 19 HELIX 11 11 TYR A 177 LEU A 195 1 19 HELIX 12 12 GLN A 197 GLU A 215 1 19 HELIX 13 13 GLN A 217 GLN A 235 1 19 HELIX 14 14 GLN A 237 SER A 255 1 19 HELIX 15 15 SER A 260 GLY A 276 1 17 HELIX 16 16 LYS A 277 GLY A 296 1 20 HELIX 17 17 ASP A 297 LEU A 312 1 16 HELIX 18 18 ASP A 316 LYS A 330 1 15 HELIX 19 19 LEU A 332 GLU A 349 1 18 HELIX 20 20 ASN A 352 GLN A 368 1 17 HELIX 21 21 SER B 9 ARG B 23 1 15 HELIX 22 22 SER B 25 ASP B 41 1 17 HELIX 23 23 GLN B 47 LEU B 67 1 21 HELIX 24 24 LEU B 67 LYS B 72 1 6 HELIX 25 25 ARG B 80 GLN B 92 1 13 HELIX 26 26 GLN B 92 GLN B 114 1 23 HELIX 27 27 GLU B 116 GLU B 128 1 13 HELIX 28 28 SER B 129 VAL B 134 5 6 HELIX 29 29 ASP B 136 MET B 154 1 19 HELIX 30 30 GLN B 156 HIS B 174 1 19 HELIX 31 31 TYR B 177 LEU B 195 1 19 HELIX 32 32 GLN B 197 GLU B 215 1 19 HELIX 33 33 GLN B 217 GLN B 235 1 19 HELIX 34 34 GLN B 237 SER B 255 1 19 HELIX 35 35 ILE B 257 PRO B 259 5 3 HELIX 36 36 SER B 260 GLY B 276 1 17 HELIX 37 37 LYS B 277 ALA B 295 1 19 HELIX 38 38 ASP B 297 LEU B 312 1 16 HELIX 39 39 ASP B 316 LYS B 330 1 15 HELIX 40 40 LEU B 332 ARG B 350 1 19 HELIX 41 41 ASN B 352 LEU B 369 1 18 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.44 LINK C1 GLC D 1 O2 FRU D 2 1555 1555 1.42 CISPEP 1 GLY A 314 PRO A 315 0 -0.50 CISPEP 2 GLY B 314 PRO B 315 0 -4.73 CRYST1 97.210 97.210 203.155 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010287 0.005939 0.000000 0.00000 SCALE2 0.000000 0.011878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004922 0.00000