PDB Short entry for 4IBW HEADER DNA BINDING PROTEIN/DNA 09-DEC-12 4IBW TITLE HUMAN P53 CORE DOMAIN WITH HOT SPOT MUTATION R273H AND SECOND-SITE TITLE 2 SUPPRESSOR MUTATION T284R IN SEQUENCE-SPECIFIC COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P53, TP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-27-B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS METAL-BINDING, LOOP-SHEET-HELIX MOTIF, TRANSCRIPTION, ACTIVATOR, KEYWDS 2 ANTI-ONCOGENE, APOPTOSIS, CELL CYCLE, DISEASE MUTATION, RESCUE KEYWDS 3 MUTATION, TUMOR SUPPRESSOR, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.ELDAR,H.ROZENBERG,Y.DISKIN-POSNER,Z.SHAKKED REVDAT 4 20-SEP-23 4IBW 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4IBW 1 REMARK REVDAT 2 23-OCT-13 4IBW 1 JRNL REVDAT 1 14-AUG-13 4IBW 0 JRNL AUTH A.ELDAR,H.ROZENBERG,Y.DISKIN-POSNER,R.ROHS,Z.SHAKKED JRNL TITL STRUCTURAL STUDIES OF P53 INACTIVATION BY DNA-CONTACT JRNL TITL 2 MUTATIONS AND ITS RESCUE BY SUPPRESSOR MUTATIONS VIA JRNL TITL 3 ALTERNATIVE PROTEIN-DNA INTERACTIONS. JRNL REF NUCLEIC ACIDS RES. V. 41 8748 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23863845 JRNL DOI 10.1093/NAR/GKT630 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3259 - 3.5802 1.00 2648 170 0.1316 0.1550 REMARK 3 2 3.5802 - 2.8421 1.00 2630 127 0.1283 0.1889 REMARK 3 3 2.8421 - 2.4830 1.00 2616 135 0.1446 0.1930 REMARK 3 4 2.4830 - 2.2560 1.00 2583 147 0.1463 0.2019 REMARK 3 5 2.2560 - 2.0943 1.00 2621 134 0.1398 0.1852 REMARK 3 6 2.0943 - 1.9709 1.00 2572 136 0.1485 0.2132 REMARK 3 7 1.9709 - 1.8722 1.00 2612 118 0.1607 0.2136 REMARK 3 8 1.8722 - 1.7910 0.99 2527 147 0.1778 0.2389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2009 REMARK 3 ANGLE : 1.146 2742 REMARK 3 CHIRALITY : 0.078 290 REMARK 3 PLANARITY : 0.005 324 REMARK 3 DIHEDRAL : 17.027 792 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 94:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0363 -2.7210 -21.4410 REMARK 3 T TENSOR REMARK 3 T11: 0.0954 T22: 0.1466 REMARK 3 T33: 0.0932 T12: 0.0006 REMARK 3 T13: -0.0267 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.2200 L22: 0.8229 REMARK 3 L33: 0.6534 L12: 0.2121 REMARK 3 L13: -0.4756 L23: -0.2683 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: 0.2261 S13: 0.2002 REMARK 3 S21: -0.2145 S22: 0.0929 S23: 0.0997 REMARK 3 S31: -0.0499 S32: 0.0786 S33: -0.0151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 113:123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5059 11.8097 -3.7556 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.1616 REMARK 3 T33: 0.1375 T12: -0.0583 REMARK 3 T13: 0.0087 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 4.5634 L22: 2.8387 REMARK 3 L33: 1.0854 L12: 3.5796 REMARK 3 L13: 1.4837 L23: 1.0114 REMARK 3 S TENSOR REMARK 3 S11: 0.1814 S12: -0.5826 S13: 0.5629 REMARK 3 S21: 0.2076 S22: -0.3624 S23: 0.3067 REMARK 3 S31: 0.0340 S32: -0.0725 S33: 0.1498 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 124:155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5154 2.9743 -8.8479 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0735 REMARK 3 T33: 0.0305 T12: 0.0010 REMARK 3 T13: -0.0066 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.8534 L22: 1.8860 REMARK 3 L33: 0.0505 L12: 1.3182 REMARK 3 L13: -0.3942 L23: -0.3611 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.1509 S13: 0.0775 REMARK 3 S21: 0.0040 S22: -0.0484 S23: 0.0369 REMARK 3 S31: 0.0016 S32: 0.0105 S33: 0.0312 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 156:176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9853 -4.2583 -21.9719 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.0257 REMARK 3 T33: 0.0464 T12: -0.0042 REMARK 3 T13: -0.0049 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 2.9608 L22: 0.9086 REMARK 3 L33: 1.5501 L12: 0.1778 REMARK 3 L13: -0.6527 L23: 0.4923 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: 0.1495 S13: -0.1215 REMARK 3 S21: -0.1047 S22: -0.0237 S23: -0.0522 REMARK 3 S31: 0.0072 S32: 0.0411 S33: 0.0682 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 177:194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6251 -10.1728 -11.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.1375 REMARK 3 T33: 0.1316 T12: 0.0353 REMARK 3 T13: 0.0003 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.6462 L22: 4.1306 REMARK 3 L33: 2.6364 L12: 2.3322 REMARK 3 L13: -0.3622 L23: -0.1240 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.4429 S13: -0.7820 REMARK 3 S21: 0.2272 S22: 0.0422 S23: -0.3165 REMARK 3 S31: 0.1060 S32: 0.3343 S33: 0.0462 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 195:203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0431 -10.5871 -4.5239 REMARK 3 T TENSOR REMARK 3 T11: 0.1418 T22: 0.2349 REMARK 3 T33: -0.0161 T12: -0.0789 REMARK 3 T13: 0.0014 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 1.3282 L22: 0.2120 REMARK 3 L33: 1.7653 L12: 0.3279 REMARK 3 L13: 0.0833 L23: 0.4544 REMARK 3 S TENSOR REMARK 3 S11: 0.3848 S12: -0.5505 S13: -0.2523 REMARK 3 S21: 0.3822 S22: -0.0968 S23: -0.1126 REMARK 3 S31: 0.1689 S32: -0.0030 S33: 0.0814 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 204:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9220 -16.1262 -19.8686 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.0696 REMARK 3 T33: 0.0760 T12: -0.0197 REMARK 3 T13: 0.0032 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.5542 L22: 2.5820 REMARK 3 L33: 1.9396 L12: 0.0311 REMARK 3 L13: 0.9295 L23: 0.9807 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: 0.0078 S13: -0.1112 REMARK 3 S21: -0.0562 S22: 0.0719 S23: 0.0395 REMARK 3 S31: 0.4410 S32: -0.1483 S33: -0.0385 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 214:229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9701 -5.8228 -3.9116 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.1412 REMARK 3 T33: 0.0704 T12: -0.0073 REMARK 3 T13: 0.0293 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.8287 L22: 1.3671 REMARK 3 L33: 1.0787 L12: 0.2897 REMARK 3 L13: 0.1066 L23: -0.2311 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.4406 S13: 0.0907 REMARK 3 S21: 0.2826 S22: -0.0345 S23: 0.1932 REMARK 3 S31: -0.0415 S32: -0.0267 S33: 0.0111 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 230:277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0816 -1.0869 -15.1715 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.0406 REMARK 3 T33: 0.0367 T12: -0.0026 REMARK 3 T13: -0.0020 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.9112 L22: 1.0939 REMARK 3 L33: 0.4934 L12: 0.5817 REMARK 3 L13: 0.0363 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0320 S12: 0.0140 S13: 0.0484 REMARK 3 S21: -0.0034 S22: 0.0232 S23: 0.0500 REMARK 3 S31: 0.0143 S32: 0.0184 S33: 0.0189 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND (RESID 278:293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9112 18.6759 -15.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.0754 T22: 0.0816 REMARK 3 T33: 0.1288 T12: -0.0118 REMARK 3 T13: 0.0039 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 5.2517 L22: 3.9380 REMARK 3 L33: 8.5898 L12: -2.0024 REMARK 3 L13: 5.8224 L23: -4.6253 REMARK 3 S TENSOR REMARK 3 S11: -0.1046 S12: 0.2742 S13: 0.3597 REMARK 3 S21: 0.0446 S22: -0.1034 S23: -0.0465 REMARK 3 S31: -0.1829 S32: 0.1992 S33: 0.2039 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 1:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1286 14.8094 -18.3892 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0707 REMARK 3 T33: 0.0994 T12: 0.0026 REMARK 3 T13: -0.0165 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 2.5212 L22: 2.4322 REMARK 3 L33: 1.5742 L12: 0.3651 REMARK 3 L13: -1.7513 L23: -0.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: 0.0142 S13: 0.1323 REMARK 3 S21: 0.0807 S22: 0.1311 S23: -0.0062 REMARK 3 S31: -0.1337 S32: 0.0160 S33: -0.1109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21929 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2AC0, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:2.4 PROTEIN/DNA RATIO, 14% PEG 3350, REMARK 280 0.14M NH4F, PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.78100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.96150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.78100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.96150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 2.19759 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.16840 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 183 REMARK 465 ASP A 184 REMARK 465 SER A 185 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 188 CD1 CD2 REMARK 470 ARG A 202 NE CZ NH1 NH2 REMARK 470 GLU A 287 CD OE1 OE2 REMARK 470 DG B 12 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DG B 12 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG B 12 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 EDO A 311 O HOH A 655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 1 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG B 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA B 6 O4' - C1' - N9 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 292 13.86 -146.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 103.4 REMARK 620 3 CYS A 238 SG 107.8 112.7 REMARK 620 4 CYS A 242 SG 116.5 101.8 114.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBQ RELATED DB: PDB REMARK 900 RELATED ID: 4IBS RELATED DB: PDB REMARK 900 RELATED ID: 4IBT RELATED DB: PDB REMARK 900 RELATED ID: 4IBU RELATED DB: PDB REMARK 900 RELATED ID: 4IBV RELATED DB: PDB REMARK 900 RELATED ID: 4IBY RELATED DB: PDB REMARK 900 RELATED ID: 4IBZ RELATED DB: PDB REMARK 900 RELATED ID: 4IJT RELATED DB: PDB DBREF 4IBW A 94 293 UNP P04637 P53_HUMAN 94 293 DBREF 4IBW B 1 12 PDB 4IBW 4IBW 1 12 SEQADV 4IBW HIS A 273 UNP P04637 ARG 273 ENGINEERED MUTATION SEQADV 4IBW ARG A 284 UNP P04637 THR 284 ENGINEERED MUTATION SEQRES 1 A 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 A 200 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL HIS VAL CYS SEQRES 15 A 200 ALA CYS PRO GLY ARG ASP ARG ARG ARG GLU GLU GLU ASN SEQRES 16 A 200 LEU ARG LYS LYS GLY SEQRES 1 B 12 DC DG DG DG DC DA DT DG DC DC DC DG HET ZN A 301 1 HET EDO A 302 4 HET EDO A 303 8 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 8 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET EDO A 313 4 HET EDO A 314 4 HET EDO A 315 4 HET EDO A 316 4 HET EDO B 101 4 HET EDO B 102 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN ZN 2+ FORMUL 4 EDO 17(C2 H6 O2) FORMUL 21 HOH *335(H2 O) HELIX 1 1 GLN A 165 MET A 169 5 5 HELIX 2 2 CYS A 176 ARG A 181 1 6 HELIX 3 3 CYS A 277 GLY A 293 1 17 SHEET 1 A 4 ARG A 110 GLY A 112 0 SHEET 2 A 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N GLU A 198 O HIS A 233 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O PHE A 134 N THR A 125 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N THR A 253 O PHE A 270 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N ARG A 156 O GLU A 258 SHEET 6 B 7 HIS A 214 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.31 LINK ND1 HIS A 179 ZN ZN A 301 1555 1555 2.07 LINK SG CYS A 238 ZN ZN A 301 1555 1555 2.35 LINK SG CYS A 242 ZN ZN A 301 1555 1555 2.35 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 SER A 95 THR A 231 HIS A 233 HOH A 659 SITE 1 AC3 9 ARG A 110 ASP A 148 ASP A 208 ASN A 210 SITE 2 AC3 9 EDO A 306 HOH A 465 HOH A 559 HOH A 658 SITE 3 AC3 9 HOH A 683 SITE 1 AC4 5 GLU A 224 VAL A 225 HOH A 518 HOH A 633 SITE 2 AC4 5 HOH A 673 SITE 1 AC5 5 ARG A 110 LEU A 111 TRP A 146 HOH A 555 SITE 2 AC5 5 HOH A 607 SITE 1 AC6 10 ARG A 110 TRP A 146 VAL A 147 ASP A 148 SITE 2 AC6 10 ASP A 228 EDO A 303 HOH A 456 HOH A 575 SITE 3 AC6 10 HOH A 658 HOH A 686 SITE 1 AC7 6 LEU A 114 SER A 166 MET A 169 HIS A 233 SITE 2 AC7 6 HOH A 498 HOH A 536 SITE 1 AC8 10 PHE A 113 LEU A 114 HIS A 115 TYR A 126 SITE 2 AC8 10 PRO A 128 ARG A 282 HOH A 466 HOH A 477 SITE 3 AC8 10 HOH A 532 HOH A 622 SITE 1 AC9 8 LYS A 132 SER A 240 ARG A 248 PRO A 250 SITE 2 AC9 8 GLU A 271 VAL A 272 HIS A 273 HOH A 507 SITE 1 BC1 4 ASP A 186 ARG A 196 ASN A 235 HOH A 669 SITE 1 BC2 7 ALA A 138 LYS A 139 THR A 140 GLN A 167 SITE 2 BC2 7 GLU A 198 ASN A 235 HOH A 655 SITE 1 BC3 4 CYS A 229 THR A 231 HOH A 470 HOH A 548 SITE 1 BC4 8 SER A 94 SER A 95 SER A 96 ASN A 200 SITE 2 BC4 8 LEU A 201 EDO A 315 HOH A 594 HOH A 679 SITE 1 BC5 7 LYS A 120 ARG A 280 ARG A 283 HOH A 464 SITE 2 BC5 7 HOH A 547 DG B 3 HOH B 227 SITE 1 BC6 7 SER A 95 GLU A 221 THR A 230 THR A 231 SITE 2 BC6 7 EDO A 313 HOH A 492 HOH A 634 SITE 1 BC7 3 ARG A 283 GLU A 286 GLU A 287 SITE 1 BC8 5 ARG A 248 DT B 7 DG B 8 EDO B 102 SITE 2 BC8 5 HOH B 241 SITE 1 BC9 7 SER A 241 ARG A 248 DC B 9 EDO B 101 SITE 2 BC9 7 HOH B 213 HOH B 219 HOH B 223 CRYST1 137.562 49.923 34.239 90.00 93.68 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007269 0.000000 0.000468 0.00000 SCALE2 0.000000 0.020031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029267 0.00000