PDB Short entry for 4IDN HEADER HYDROLASE 12-DEC-12 4IDN TITLE HUMAN ATLASTIN-1 1-446, C-HIS6, GPPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATLASTIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN (UNP RESIDUES 1-446); COMPND 5 SYNONYM: BRAIN-SPECIFIC GTP-BINDING PROTEIN, GTP-BINDING PROTEIN 3, COMPND 6 GBP-3, HGBP3, GUANINE NUCLEOTIDE-BINDING PROTEIN 3, SPASTIC COMPND 7 PARAPLEGIA 3 PROTEIN A; COMPND 8 EC: 3.6.5.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATL1, GBP3, SPG3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GTPASE, GTP/GDP BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.BYRNES,A.SINGH,K.SZETO,N.M.BENVIN,J.P.O'DONNELL,W.R.ZIPFEL, AUTHOR 2 H.SONDERMANN REVDAT 3 20-FEB-13 4IDN 1 JRNL REVDAT 2 06-FEB-13 4IDN 1 JRNL REVDAT 1 09-JAN-13 4IDN 0 JRNL AUTH L.J.BYRNES,A.SINGH,K.SZETO,N.M.BENVIN,J.P.O'DONNELL, JRNL AUTH 2 W.R.ZIPFEL,H.SONDERMANN JRNL TITL STRUCTURAL BASIS FOR CONFORMATIONAL SWITCHING AND GTP JRNL TITL 2 LOADING OF THE LARGE G PROTEIN ATLASTIN. JRNL REF EMBO J. V. 32 369 2013 JRNL REFN ISSN 0261-4189 JRNL PMID 23334294 JRNL DOI 10.1038/EMBOJ.2012.353 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 47830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9285 - 5.4258 0.99 3673 160 0.1634 0.1790 REMARK 3 2 5.4258 - 4.3075 1.00 3519 154 0.1385 0.1755 REMARK 3 3 4.3075 - 3.7633 0.99 3466 151 0.1369 0.1847 REMARK 3 4 3.7633 - 3.4193 0.99 3454 150 0.1626 0.1897 REMARK 3 5 3.4193 - 3.1743 0.98 3398 149 0.1739 0.2442 REMARK 3 6 3.1743 - 2.9871 0.98 3351 146 0.1961 0.2639 REMARK 3 7 2.9871 - 2.8376 0.96 3295 143 0.1987 0.2587 REMARK 3 8 2.8376 - 2.7141 0.94 3212 140 0.2006 0.2552 REMARK 3 9 2.7141 - 2.6096 0.93 3146 138 0.2004 0.2274 REMARK 3 10 2.6096 - 2.5195 0.93 3158 137 0.1982 0.2598 REMARK 3 11 2.5195 - 2.4408 0.91 3138 137 0.2022 0.2536 REMARK 3 12 2.4408 - 2.3710 0.92 3082 134 0.2100 0.2693 REMARK 3 13 2.3710 - 2.3086 0.90 3109 136 0.2157 0.2937 REMARK 3 14 2.3086 - 2.2520 0.84 2831 123 0.2385 0.3029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6975 REMARK 3 ANGLE : 0.979 9428 REMARK 3 CHIRALITY : 0.067 1023 REMARK 3 PLANARITY : 0.003 1207 REMARK 3 DIHEDRAL : 15.783 2612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 30:345) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5765 -13.4809 -50.9567 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.1989 REMARK 3 T33: 0.2858 T12: 0.0042 REMARK 3 T13: 0.0694 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.3679 L22: 1.3432 REMARK 3 L33: 1.1127 L12: 0.3557 REMARK 3 L13: 0.7033 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.0510 S13: -0.2221 REMARK 3 S21: -0.1549 S22: 0.1152 S23: -0.1322 REMARK 3 S31: 0.0303 S32: 0.0007 S33: -0.0643 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 346:446) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8034 -25.5662 -7.6986 REMARK 3 T TENSOR REMARK 3 T11: 0.2860 T22: 0.4045 REMARK 3 T33: 0.3782 T12: -0.0141 REMARK 3 T13: 0.0078 T23: 0.1135 REMARK 3 L TENSOR REMARK 3 L11: 1.4988 L22: 1.2698 REMARK 3 L33: 2.1210 L12: 0.4688 REMARK 3 L13: -0.6776 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.1335 S13: 0.1901 REMARK 3 S21: 0.0291 S22: 0.1252 S23: 0.3034 REMARK 3 S31: -0.0142 S32: -0.0533 S33: -0.1283 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain B and resid 31:347) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1258 6.4461 -23.0047 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.1566 REMARK 3 T33: 0.1740 T12: 0.0109 REMARK 3 T13: -0.0274 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.0385 L22: 1.2368 REMARK 3 L33: 1.4692 L12: 0.0984 REMARK 3 L13: -0.1236 L23: -0.0825 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.1465 S13: -0.0900 REMARK 3 S21: 0.1877 S22: 0.0345 S23: -0.1206 REMARK 3 S31: -0.0659 S32: 0.0257 S33: -0.0405 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain B and resid 348:453) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1383 -41.3300 -16.9516 REMARK 3 T TENSOR REMARK 3 T11: 0.4605 T22: 0.3682 REMARK 3 T33: 0.3065 T12: -0.0545 REMARK 3 T13: 0.0190 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 0.4674 L22: 1.3691 REMARK 3 L33: 0.7091 L12: 0.6356 REMARK 3 L13: -0.1452 L23: -0.8248 REMARK 3 S TENSOR REMARK 3 S11: -0.2079 S12: 0.0499 S13: -0.0629 REMARK 3 S21: -0.3491 S22: 0.1604 S23: -0.0662 REMARK 3 S31: 0.4957 S32: -0.0486 S33: 0.0369 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-12. REMARK 100 THE RCSB ID CODE IS RCSB076620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4IDQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, PH 7.0, 20% V/V REMARK 280 JEFFAMINE ED-2001, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.84400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.56350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.89000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.56350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.84400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.89000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 TRP A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 PHE A 14 REMARK 465 SER A 15 REMARK 465 GLU A 16 REMARK 465 LYS A 17 REMARK 465 THR A 18 REMARK 465 TYR A 19 REMARK 465 GLU A 20 REMARK 465 TRP A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 ALA A 447 REMARK 465 ALA A 448 REMARK 465 ALA A 449 REMARK 465 LEU A 450 REMARK 465 GLU A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 ASN B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 TRP B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 PHE B 14 REMARK 465 SER B 15 REMARK 465 GLU B 16 REMARK 465 LYS B 17 REMARK 465 THR B 18 REMARK 465 TYR B 19 REMARK 465 GLU B 20 REMARK 465 TRP B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 GLU B 24 REMARK 465 GLU B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 PRO B 28 REMARK 465 VAL B 29 REMARK 465 LYS B 30 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 465 HIS B 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 453 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 46.11 -108.48 REMARK 500 GLN A 180 -47.92 70.27 REMARK 500 GLN A 210 -99.78 -103.71 REMARK 500 PRO A 307 -35.27 -38.57 REMARK 500 ARG B 63 -63.04 -23.54 REMARK 500 GLN B 180 -36.52 71.53 REMARK 500 GLN B 210 -100.52 -116.46 REMARK 500 CYS B 375 29.28 -142.21 REMARK 500 ASN B 440 70.57 -155.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP A 501 O1G REMARK 620 2 GNP A 501 O1B 89.2 REMARK 620 3 SER A 81 OG 176.1 92.8 REMARK 620 4 THR A 120 OG1 92.9 177.8 85.0 REMARK 620 5 HOH A 601 O 96.0 91.3 80.6 88.4 REMARK 620 6 HOH A 602 O 93.7 89.5 89.7 90.4 170.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP B 501 O2G REMARK 620 2 THR B 120 OG1 85.5 REMARK 620 3 SER B 81 OG 173.8 93.0 REMARK 620 4 GNP B 501 O2B 89.9 175.0 91.8 REMARK 620 5 HOH B 775 O 88.9 93.3 85.2 88.5 REMARK 620 6 HOH B 606 O 101.0 91.0 85.1 88.0 169.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IDO RELATED DB: PDB REMARK 900 RELATED ID: 4IDP RELATED DB: PDB REMARK 900 RELATED ID: 4IDQ RELATED DB: PDB REMARK 900 RELATED ID: 3Q5D RELATED DB: PDB REMARK 900 RELATED ID: 3Q5E RELATED DB: PDB DBREF 4IDN A 1 446 UNP Q8WXF7 ATLA1_HUMAN 1 446 DBREF 4IDN B 1 446 UNP Q8WXF7 ATLA1_HUMAN 1 446 SEQADV 4IDN ALA A 447 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN ALA A 448 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN ALA A 449 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN LEU A 450 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN GLU A 451 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS A 452 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS A 453 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS A 454 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS A 455 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS A 456 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS A 457 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN ALA B 447 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN ALA B 448 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN ALA B 449 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN LEU B 450 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN GLU B 451 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS B 452 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS B 453 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS B 454 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS B 455 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS B 456 UNP Q8WXF7 EXPRESSION TAG SEQADV 4IDN HIS B 457 UNP Q8WXF7 EXPRESSION TAG SEQRES 1 A 457 MET ALA LYS ASN ARG ARG ASP ARG ASN SER TRP GLY GLY SEQRES 2 A 457 PHE SER GLU LYS THR TYR GLU TRP SER SER GLU GLU GLU SEQRES 3 A 457 GLU PRO VAL LYS LYS ALA GLY PRO VAL GLN VAL LEU ILE SEQRES 4 A 457 VAL LYS ASP ASP HIS SER PHE GLU LEU ASP GLU THR ALA SEQRES 5 A 457 LEU ASN ARG ILE LEU LEU SER GLU ALA VAL ARG ASP LYS SEQRES 6 A 457 GLU VAL VAL ALA VAL SER VAL ALA GLY ALA PHE ARG LYS SEQRES 7 A 457 GLY LYS SER PHE LEU MET ASP PHE MET LEU ARG TYR MET SEQRES 8 A 457 TYR ASN GLN GLU SER VAL ASP TRP VAL GLY ASP TYR ASN SEQRES 9 A 457 GLU PRO LEU THR GLY PHE SER TRP ARG GLY GLY SER GLU SEQRES 10 A 457 ARG GLU THR THR GLY ILE GLN ILE TRP SER GLU ILE PHE SEQRES 11 A 457 LEU ILE ASN LYS PRO ASP GLY LYS LYS VAL ALA VAL LEU SEQRES 12 A 457 LEU MET ASP THR GLN GLY THR PHE ASP SER GLN SER THR SEQRES 13 A 457 LEU ARG ASP SER ALA THR VAL PHE ALA LEU SER THR MET SEQRES 14 A 457 ILE SER SER ILE GLN VAL TYR ASN LEU SER GLN ASN VAL SEQRES 15 A 457 GLN GLU ASP ASP LEU GLN HIS LEU GLN LEU PHE THR GLU SEQRES 16 A 457 TYR GLY ARG LEU ALA MET GLU GLU THR PHE LEU LYS PRO SEQRES 17 A 457 PHE GLN SER LEU ILE PHE LEU VAL ARG ASP TRP SER PHE SEQRES 18 A 457 PRO TYR GLU PHE SER TYR GLY ALA ASP GLY GLY ALA LYS SEQRES 19 A 457 PHE LEU GLU LYS ARG LEU LYS VAL SER GLY ASN GLN HIS SEQRES 20 A 457 GLU GLU LEU GLN ASN VAL ARG LYS HIS ILE HIS SER CYS SEQRES 21 A 457 PHE THR ASN ILE SER CYS PHE LEU LEU PRO HIS PRO GLY SEQRES 22 A 457 LEU LYS VAL ALA THR ASN PRO ASN PHE ASP GLY LYS LEU SEQRES 23 A 457 LYS GLU ILE ASP ASP GLU PHE ILE LYS ASN LEU LYS ILE SEQRES 24 A 457 LEU ILE PRO TRP LEU LEU SER PRO GLU SER LEU ASP ILE SEQRES 25 A 457 LYS GLU ILE ASN GLY ASN LYS ILE THR CYS ARG GLY LEU SEQRES 26 A 457 VAL GLU TYR PHE LYS ALA TYR ILE LYS ILE TYR GLN GLY SEQRES 27 A 457 GLU GLU LEU PRO HIS PRO LYS SER MET LEU GLN ALA THR SEQRES 28 A 457 ALA GLU ALA ASN ASN LEU ALA ALA VAL ALA THR ALA LYS SEQRES 29 A 457 ASP THR TYR ASN LYS LYS MET GLU GLU ILE CYS GLY GLY SEQRES 30 A 457 ASP LYS PRO PHE LEU ALA PRO ASN ASP LEU GLN THR LYS SEQRES 31 A 457 HIS LEU GLN LEU LYS GLU GLU SER VAL LYS LEU PHE ARG SEQRES 32 A 457 GLY VAL LYS LYS MET GLY GLY GLU GLU PHE SER ARG ARG SEQRES 33 A 457 TYR LEU GLN GLN LEU GLU SER GLU ILE ASP GLU LEU TYR SEQRES 34 A 457 ILE GLN TYR ILE LYS HIS ASN ASP SER LYS ASN ILE PHE SEQRES 35 A 457 HIS ALA ALA ARG ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 36 A 457 HIS HIS SEQRES 1 B 457 MET ALA LYS ASN ARG ARG ASP ARG ASN SER TRP GLY GLY SEQRES 2 B 457 PHE SER GLU LYS THR TYR GLU TRP SER SER GLU GLU GLU SEQRES 3 B 457 GLU PRO VAL LYS LYS ALA GLY PRO VAL GLN VAL LEU ILE SEQRES 4 B 457 VAL LYS ASP ASP HIS SER PHE GLU LEU ASP GLU THR ALA SEQRES 5 B 457 LEU ASN ARG ILE LEU LEU SER GLU ALA VAL ARG ASP LYS SEQRES 6 B 457 GLU VAL VAL ALA VAL SER VAL ALA GLY ALA PHE ARG LYS SEQRES 7 B 457 GLY LYS SER PHE LEU MET ASP PHE MET LEU ARG TYR MET SEQRES 8 B 457 TYR ASN GLN GLU SER VAL ASP TRP VAL GLY ASP TYR ASN SEQRES 9 B 457 GLU PRO LEU THR GLY PHE SER TRP ARG GLY GLY SER GLU SEQRES 10 B 457 ARG GLU THR THR GLY ILE GLN ILE TRP SER GLU ILE PHE SEQRES 11 B 457 LEU ILE ASN LYS PRO ASP GLY LYS LYS VAL ALA VAL LEU SEQRES 12 B 457 LEU MET ASP THR GLN GLY THR PHE ASP SER GLN SER THR SEQRES 13 B 457 LEU ARG ASP SER ALA THR VAL PHE ALA LEU SER THR MET SEQRES 14 B 457 ILE SER SER ILE GLN VAL TYR ASN LEU SER GLN ASN VAL SEQRES 15 B 457 GLN GLU ASP ASP LEU GLN HIS LEU GLN LEU PHE THR GLU SEQRES 16 B 457 TYR GLY ARG LEU ALA MET GLU GLU THR PHE LEU LYS PRO SEQRES 17 B 457 PHE GLN SER LEU ILE PHE LEU VAL ARG ASP TRP SER PHE SEQRES 18 B 457 PRO TYR GLU PHE SER TYR GLY ALA ASP GLY GLY ALA LYS SEQRES 19 B 457 PHE LEU GLU LYS ARG LEU LYS VAL SER GLY ASN GLN HIS SEQRES 20 B 457 GLU GLU LEU GLN ASN VAL ARG LYS HIS ILE HIS SER CYS SEQRES 21 B 457 PHE THR ASN ILE SER CYS PHE LEU LEU PRO HIS PRO GLY SEQRES 22 B 457 LEU LYS VAL ALA THR ASN PRO ASN PHE ASP GLY LYS LEU SEQRES 23 B 457 LYS GLU ILE ASP ASP GLU PHE ILE LYS ASN LEU LYS ILE SEQRES 24 B 457 LEU ILE PRO TRP LEU LEU SER PRO GLU SER LEU ASP ILE SEQRES 25 B 457 LYS GLU ILE ASN GLY ASN LYS ILE THR CYS ARG GLY LEU SEQRES 26 B 457 VAL GLU TYR PHE LYS ALA TYR ILE LYS ILE TYR GLN GLY SEQRES 27 B 457 GLU GLU LEU PRO HIS PRO LYS SER MET LEU GLN ALA THR SEQRES 28 B 457 ALA GLU ALA ASN ASN LEU ALA ALA VAL ALA THR ALA LYS SEQRES 29 B 457 ASP THR TYR ASN LYS LYS MET GLU GLU ILE CYS GLY GLY SEQRES 30 B 457 ASP LYS PRO PHE LEU ALA PRO ASN ASP LEU GLN THR LYS SEQRES 31 B 457 HIS LEU GLN LEU LYS GLU GLU SER VAL LYS LEU PHE ARG SEQRES 32 B 457 GLY VAL LYS LYS MET GLY GLY GLU GLU PHE SER ARG ARG SEQRES 33 B 457 TYR LEU GLN GLN LEU GLU SER GLU ILE ASP GLU LEU TYR SEQRES 34 B 457 ILE GLN TYR ILE LYS HIS ASN ASP SER LYS ASN ILE PHE SEQRES 35 B 457 HIS ALA ALA ARG ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 36 B 457 HIS HIS HET GNP A 501 32 HET MG A 502 1 HET GNP B 501 32 HET MG B 502 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *364(H2 O) HELIX 1 1 ASP A 49 LEU A 58 1 10 HELIX 2 2 GLY A 79 ASN A 93 1 15 HELIX 3 3 THR A 156 SER A 171 1 16 HELIX 4 4 GLN A 183 ALA A 200 1 18 HELIX 5 5 GLY A 228 LYS A 241 1 14 HELIX 6 6 HIS A 247 CYS A 260 1 14 HELIX 7 7 GLY A 273 ASN A 279 1 7 HELIX 8 8 LYS A 285 ILE A 289 5 5 HELIX 9 9 ASP A 290 SER A 306 1 17 HELIX 10 10 THR A 321 GLY A 338 1 18 HELIX 11 11 SER A 346 GLY A 376 1 31 HELIX 12 12 ALA A 383 VAL A 405 1 23 HELIX 13 13 SER A 414 ALA A 445 1 32 HELIX 14 14 ASP B 49 LEU B 58 1 10 HELIX 15 15 GLY B 79 ASN B 93 1 15 HELIX 16 16 THR B 156 SER B 171 1 16 HELIX 17 17 GLN B 183 LEU B 199 1 17 HELIX 18 18 GLY B 228 LYS B 241 1 14 HELIX 19 19 HIS B 247 CYS B 260 1 14 HELIX 20 20 GLY B 273 ASN B 279 1 7 HELIX 21 21 LYS B 285 ILE B 289 5 5 HELIX 22 22 ASP B 290 SER B 306 1 17 HELIX 23 23 THR B 321 GLU B 339 1 19 HELIX 24 24 SER B 346 GLY B 376 1 31 HELIX 25 25 ALA B 383 VAL B 405 1 23 HELIX 26 26 GLY B 410 SER B 438 1 29 HELIX 27 27 PHE B 442 HIS B 453 1 12 SHEET 1 A 5 PHE A 46 LEU A 48 0 SHEET 2 A 5 PRO A 34 VAL A 40 -1 N ILE A 39 O GLU A 47 SHEET 3 A 5 ILE A 123 TRP A 126 -1 O ILE A 125 N VAL A 35 SHEET 4 A 5 LYS A 139 THR A 147 -1 O ASP A 146 N GLN A 124 SHEET 5 A 5 PHE A 130 ASN A 133 -1 N ILE A 132 O VAL A 140 SHEET 1 B 8 PHE A 46 LEU A 48 0 SHEET 2 B 8 PRO A 34 VAL A 40 -1 N ILE A 39 O GLU A 47 SHEET 3 B 8 ILE A 123 TRP A 126 -1 O ILE A 125 N VAL A 35 SHEET 4 B 8 LYS A 139 THR A 147 -1 O ASP A 146 N GLN A 124 SHEET 5 B 8 VAL A 67 GLY A 74 1 N VAL A 68 O ALA A 141 SHEET 6 B 8 ILE A 173 SER A 179 1 O ASN A 177 N ALA A 73 SHEET 7 B 8 PHE A 209 ARG A 217 1 O ARG A 217 N LEU A 178 SHEET 8 B 8 PHE A 261 LEU A 268 1 O SER A 265 N PHE A 214 SHEET 1 C 2 GLU A 314 ILE A 315 0 SHEET 2 C 2 ASN A 318 LYS A 319 -1 O ASN A 318 N ILE A 315 SHEET 1 D 5 PHE B 46 LEU B 48 0 SHEET 2 D 5 PRO B 34 VAL B 40 -1 N ILE B 39 O GLU B 47 SHEET 3 D 5 ILE B 123 TRP B 126 -1 O ILE B 125 N VAL B 35 SHEET 4 D 5 LYS B 139 THR B 147 -1 O ASP B 146 N GLN B 124 SHEET 5 D 5 PHE B 130 ASN B 133 -1 N PHE B 130 O VAL B 142 SHEET 1 E 8 PHE B 46 LEU B 48 0 SHEET 2 E 8 PRO B 34 VAL B 40 -1 N ILE B 39 O GLU B 47 SHEET 3 E 8 ILE B 123 TRP B 126 -1 O ILE B 125 N VAL B 35 SHEET 4 E 8 LYS B 139 THR B 147 -1 O ASP B 146 N GLN B 124 SHEET 5 E 8 VAL B 67 GLY B 74 1 N VAL B 70 O LEU B 143 SHEET 6 E 8 ILE B 173 SER B 179 1 O ASN B 177 N ALA B 73 SHEET 7 E 8 PHE B 209 ARG B 217 1 O ILE B 213 N TYR B 176 SHEET 8 E 8 PHE B 261 LEU B 268 1 O SER B 265 N PHE B 214 SHEET 1 F 2 GLU B 314 ILE B 315 0 SHEET 2 F 2 ASN B 318 LYS B 319 -1 O ASN B 318 N ILE B 315 LINK O1G GNP A 501 MG MG A 502 1555 1555 1.90 LINK O2G GNP B 501 MG MG B 502 1555 1555 2.00 LINK OG1 THR B 120 MG MG B 502 1555 1555 2.02 LINK O1B GNP A 501 MG MG A 502 1555 1555 2.02 LINK OG SER B 81 MG MG B 502 1555 1555 2.03 LINK O2B GNP B 501 MG MG B 502 1555 1555 2.08 LINK OG SER A 81 MG MG A 502 1555 1555 2.11 LINK OG1 THR A 120 MG MG A 502 1555 1555 2.12 LINK MG MG A 502 O HOH A 601 1555 1555 2.01 LINK MG MG A 502 O HOH A 602 1555 1555 2.06 LINK MG MG B 502 O HOH B 775 1555 1555 2.07 LINK MG MG B 502 O HOH B 606 1555 1555 2.25 CISPEP 1 MET A 408 GLY A 409 0 -12.35 CISPEP 2 MET B 408 GLY B 409 0 -9.19 SITE 1 AC1 26 PHE A 76 ARG A 77 LYS A 78 GLY A 79 SITE 2 AC1 26 LYS A 80 SER A 81 PHE A 82 TRP A 112 SITE 3 AC1 26 ARG A 113 GLY A 114 ARG A 118 GLU A 119 SITE 4 AC1 26 THR A 120 GLY A 149 ARG A 217 ASP A 218 SITE 5 AC1 26 HIS A 271 PRO A 272 VAL A 276 PHE A 282 SITE 6 AC1 26 MG A 502 HOH A 601 HOH A 602 HOH A 603 SITE 7 AC1 26 HOH A 609 HOH A 615 SITE 1 AC2 5 SER A 81 THR A 120 GNP A 501 HOH A 601 SITE 2 AC2 5 HOH A 602 SITE 1 AC3 28 PHE B 76 ARG B 77 LYS B 78 GLY B 79 SITE 2 AC3 28 LYS B 80 SER B 81 PHE B 82 TRP B 112 SITE 3 AC3 28 ARG B 113 GLY B 114 ARG B 118 GLU B 119 SITE 4 AC3 28 THR B 120 GLY B 149 ARG B 217 ASP B 218 SITE 5 AC3 28 PRO B 272 VAL B 276 PHE B 282 MG B 502 SITE 6 AC3 28 HOH B 601 HOH B 606 HOH B 607 HOH B 616 SITE 7 AC3 28 HOH B 625 HOH B 670 HOH B 685 HOH B 775 SITE 1 AC4 5 SER B 81 THR B 120 GNP B 501 HOH B 606 SITE 2 AC4 5 HOH B 775 CRYST1 49.688 115.780 181.127 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005521 0.00000