PDB Short entry for 4IF8 HEADER HYDROLASE INHIBITOR 14-DEC-12 4IF8 TITLE STRUCTURE OF VASPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERPIN A12; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 22-414; COMPND 5 SYNONYM: OL-64, VISCERAL ADIPOSE TISSUE-DERIVED SERINE PROTEASE COMPND 6 INHIBITOR, VASPIN, VISCERAL ADIPOSE-SPECIFIC SERPIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPINA12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-16B KEYWDS SERPIN, SERINE PROTEASE INHIBITOR, KALLIKREIN 7, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR E.B.KUETTNER,N.STRATER,J.T.HEIKER,N.KLOTING,P.KOVACS,S.SCHULTZ, AUTHOR 2 M.KERN,M.STUMVOLL,M.BLUHER,A.G.BECK-SICKINGER REVDAT 3 08-NOV-23 4IF8 1 REMARK SEQADV REVDAT 2 31-JUL-13 4IF8 1 JRNL REVDAT 1 13-FEB-13 4IF8 0 JRNL AUTH J.T.HEIKER,N.KLOTING,P.KOVACS,E.B.KUETTNER,N.STRATER, JRNL AUTH 2 S.SCHULTZ,M.KERN,M.STUMVOLL,M.BLUHER,A.G.BECK-SICKINGER JRNL TITL VASPIN INHIBITS KALLIKREIN 7 BY SERPIN MECHANISM JRNL REF CELL.MOL.LIFE SCI. V. 70 2569 2013 JRNL REFN ISSN 1420-682X JRNL PMID 23370777 JRNL DOI 10.1007/S00018-013-1258-8 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 72713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5339 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2047 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5263 REMARK 3 BIN R VALUE (WORKING SET) : 0.2047 REMARK 3 BIN FREE R VALUE : 0.2072 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.42 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 76 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61880 REMARK 3 B22 (A**2) : -2.62870 REMARK 3 B33 (A**2) : 3.24750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05950 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6085 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8187 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2219 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 160 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 846 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6085 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 786 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7077 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 37 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9349 91.6120 -3.8011 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: -0.0192 REMARK 3 T33: -0.0285 T12: 0.0577 REMARK 3 T13: 0.1381 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 5.7846 L22: 5.5596 REMARK 3 L33: 2.0841 L12: -4.6110 REMARK 3 L13: 2.3444 L23: -2.1995 REMARK 3 S TENSOR REMARK 3 S11: -0.1537 S12: 0.1323 S13: 0.0661 REMARK 3 S21: -0.1464 S22: 0.0394 S23: -0.3426 REMARK 3 S31: 0.4617 S32: 0.1445 S33: 0.1143 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: A 71 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6353 94.6706 10.4466 REMARK 3 T TENSOR REMARK 3 T11: -0.0147 T22: -0.0710 REMARK 3 T33: -0.0829 T12: 0.1254 REMARK 3 T13: 0.0787 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.2298 L22: 1.1964 REMARK 3 L33: 2.5222 L12: -0.0744 REMARK 3 L13: 0.0622 L23: -0.0937 REMARK 3 S TENSOR REMARK 3 S11: -0.1288 S12: -0.2008 S13: -0.2165 REMARK 3 S21: 0.1867 S22: 0.0314 S23: -0.0390 REMARK 3 S31: 0.2786 S32: 0.4517 S33: 0.0974 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: A 162 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9929 105.5600 -8.0727 REMARK 3 T TENSOR REMARK 3 T11: -0.0843 T22: -0.1207 REMARK 3 T33: -0.0946 T12: 0.0014 REMARK 3 T13: 0.0455 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 1.5593 L22: 0.6660 REMARK 3 L33: 3.5607 L12: -0.2780 REMARK 3 L13: -0.5157 L23: 0.4770 REMARK 3 S TENSOR REMARK 3 S11: -0.1039 S12: 0.2201 S13: 0.1373 REMARK 3 S21: -0.0499 S22: 0.0004 S23: -0.0172 REMARK 3 S31: 0.0564 S32: 0.2479 S33: 0.1035 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: A 305 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1110 102.2590 -2.7977 REMARK 3 T TENSOR REMARK 3 T11: -0.0696 T22: -0.1063 REMARK 3 T33: -0.0816 T12: 0.0286 REMARK 3 T13: 0.0599 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.5962 L22: 1.1510 REMARK 3 L33: 3.3503 L12: 0.2143 REMARK 3 L13: -0.8079 L23: -0.6999 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: 0.0828 S13: 0.0509 REMARK 3 S21: 0.0341 S22: -0.0275 S23: 0.0094 REMARK 3 S31: -0.0207 S32: 0.1446 S33: 0.0791 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: B 35 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1884 147.9260 10.6424 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: -0.2687 REMARK 3 T33: 0.1203 T12: -0.1280 REMARK 3 T13: -0.0459 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 3.7853 L22: 5.1117 REMARK 3 L33: 2.7849 L12: 1.7443 REMARK 3 L13: -0.5960 L23: -3.4621 REMARK 3 S TENSOR REMARK 3 S11: -0.3085 S12: -0.2384 S13: 0.5889 REMARK 3 S21: 0.5598 S22: 0.0997 S23: -0.5476 REMARK 3 S31: -0.4288 S32: -0.0566 S33: 0.2089 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: B 71 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8499 137.9120 -0.1121 REMARK 3 T TENSOR REMARK 3 T11: -0.1465 T22: -0.2495 REMARK 3 T33: 0.0010 T12: -0.0950 REMARK 3 T13: 0.0438 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 2.7386 L22: 3.3486 REMARK 3 L33: 1.2096 L12: 0.7455 REMARK 3 L13: 0.4157 L23: -0.1798 REMARK 3 S TENSOR REMARK 3 S11: -0.1292 S12: 0.2804 S13: 0.4061 REMARK 3 S21: -0.1652 S22: 0.0771 S23: -0.2788 REMARK 3 S31: -0.2345 S32: 0.2903 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: B 178 B 309 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4298 137.2930 22.3950 REMARK 3 T TENSOR REMARK 3 T11: -0.0122 T22: -0.1533 REMARK 3 T33: -0.0200 T12: -0.0562 REMARK 3 T13: -0.2544 T23: -0.1463 REMARK 3 L TENSOR REMARK 3 L11: 1.6178 L22: 2.6434 REMARK 3 L33: 2.5866 L12: 0.5559 REMARK 3 L13: 0.3929 L23: 0.3570 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: -0.4592 S13: 0.3380 REMARK 3 S21: 0.8703 S22: 0.1080 S23: -0.6989 REMARK 3 S31: -0.3654 S32: 0.5605 S33: 0.0181 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: B 310 B 413 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9895 138.3300 13.8221 REMARK 3 T TENSOR REMARK 3 T11: -0.1347 T22: -0.3276 REMARK 3 T33: -0.0364 T12: -0.0629 REMARK 3 T13: -0.0014 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 4.6085 L22: 3.9181 REMARK 3 L33: 3.1955 L12: 0.4488 REMARK 3 L13: 2.1840 L23: 0.7041 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.4459 S13: 0.2280 REMARK 3 S21: 0.7085 S22: 0.1088 S23: -0.4143 REMARK 3 S31: -0.1153 S32: 0.0792 S33: -0.0975 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72713 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 29.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1QLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE, 9% PEG4000, 0.1M REMARK 280 AMMONIA SULFATE, PH 5.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.77500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.77500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 76.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 HIS A 15 REMARK 465 ILE A 16 REMARK 465 GLU A 17 REMARK 465 GLY A 18 REMARK 465 ARG A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 SER A 24 REMARK 465 PHE A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 ARG A 28 REMARK 465 ASN A 29 REMARK 465 TYR A 30 REMARK 465 LYS A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 SER A 34 REMARK 465 GLU A 35 REMARK 465 VAL A 36 REMARK 465 GLY A 367 REMARK 465 ALA A 368 REMARK 465 ALA A 369 REMARK 465 GLY A 370 REMARK 465 THR A 371 REMARK 465 GLY A 372 REMARK 465 ALA A 373 REMARK 465 GLN A 374 REMARK 465 THR A 375 REMARK 465 LEU A 376 REMARK 465 PRO A 377 REMARK 465 GLY B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 GLY B 14 REMARK 465 HIS B 15 REMARK 465 ILE B 16 REMARK 465 GLU B 17 REMARK 465 GLY B 18 REMARK 465 ARG B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 LYS B 22 REMARK 465 PRO B 23 REMARK 465 SER B 24 REMARK 465 PHE B 25 REMARK 465 SER B 26 REMARK 465 PRO B 27 REMARK 465 ARG B 28 REMARK 465 ASN B 29 REMARK 465 TYR B 30 REMARK 465 LYS B 31 REMARK 465 ALA B 32 REMARK 465 LEU B 33 REMARK 465 SER B 34 REMARK 465 GLY B 278 REMARK 465 LYS B 279 REMARK 465 GLU B 366 REMARK 465 GLY B 367 REMARK 465 ALA B 368 REMARK 465 ALA B 369 REMARK 465 GLY B 370 REMARK 465 THR B 371 REMARK 465 GLY B 372 REMARK 465 ALA B 373 REMARK 465 GLN B 374 REMARK 465 THR B 375 REMARK 465 LEU B 376 REMARK 465 PRO B 377 REMARK 465 MET B 378 REMARK 465 GLU B 379 REMARK 465 THR B 380 REMARK 465 PRO B 381 REMARK 465 LYS B 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 -129.54 44.79 REMARK 500 ASN A 267 56.02 -63.20 REMARK 500 SER A 329 -23.59 -143.78 REMARK 500 HIS A 344 116.20 168.34 REMARK 500 SER A 401 150.63 172.46 REMARK 500 ASP B 92 -132.06 48.28 REMARK 500 GLN B 145 70.81 55.74 REMARK 500 ASN B 267 63.72 -64.90 REMARK 500 SER B 329 -25.79 -143.34 REMARK 500 ASP B 361 -159.24 -143.80 REMARK 500 ARG B 363 122.62 -36.10 REMARK 500 SER B 401 150.03 174.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 DBREF 4IF8 A 22 414 UNP Q8IW75 SPA12_HUMAN 22 414 DBREF 4IF8 B 22 414 UNP Q8IW75 SPA12_HUMAN 22 414 SEQADV 4IF8 GLY A 1 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 2 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 3 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 4 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 5 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 6 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 7 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 8 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 9 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 10 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 11 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 SER A 12 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 SER A 13 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 GLY A 14 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 15 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 ILE A 16 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 GLU A 17 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 GLY A 18 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 ARG A 19 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS A 20 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 MET A 21 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 GLY B 1 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 2 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 3 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 4 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 5 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 6 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 7 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 8 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 9 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 10 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 11 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 SER B 12 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 SER B 13 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 GLY B 14 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 15 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 ILE B 16 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 GLU B 17 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 GLY B 18 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 ARG B 19 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 HIS B 20 UNP Q8IW75 EXPRESSION TAG SEQADV 4IF8 MET B 21 UNP Q8IW75 EXPRESSION TAG SEQRES 1 A 414 GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 414 GLY HIS ILE GLU GLY ARG HIS MET LYS PRO SER PHE SER SEQRES 3 A 414 PRO ARG ASN TYR LYS ALA LEU SER GLU VAL GLN GLY TRP SEQRES 4 A 414 LYS GLN ARG MET ALA ALA LYS GLU LEU ALA ARG GLN ASN SEQRES 5 A 414 MET ASP LEU GLY PHE LYS LEU LEU LYS LYS LEU ALA PHE SEQRES 6 A 414 TYR ASN PRO GLY ARG ASN ILE PHE LEU SER PRO LEU SER SEQRES 7 A 414 ILE SER THR ALA PHE SER MET LEU CYS LEU GLY ALA GLN SEQRES 8 A 414 ASP SER THR LEU ASP GLU ILE LYS GLN GLY PHE ASN PHE SEQRES 9 A 414 ARG LYS MET PRO GLU LYS ASP LEU HIS GLU GLY PHE HIS SEQRES 10 A 414 TYR ILE ILE HIS GLU LEU THR GLN LYS THR GLN ASP LEU SEQRES 11 A 414 LYS LEU SER ILE GLY ASN THR LEU PHE ILE ASP GLN ARG SEQRES 12 A 414 LEU GLN PRO GLN ARG LYS PHE LEU GLU ASP ALA LYS ASN SEQRES 13 A 414 PHE TYR SER ALA GLU THR ILE LEU THR ASN PHE GLN ASN SEQRES 14 A 414 LEU GLU MET ALA GLN LYS GLN ILE ASN ASP PHE ILE SER SEQRES 15 A 414 GLN LYS THR HIS GLY LYS ILE ASN ASN LEU ILE GLU ASN SEQRES 16 A 414 ILE ASP PRO GLY THR VAL MET LEU LEU ALA ASN TYR ILE SEQRES 17 A 414 PHE PHE ARG ALA ARG TRP LYS HIS GLU PHE ASP PRO ASN SEQRES 18 A 414 VAL THR LYS GLU GLU ASP PHE PHE LEU GLU LYS ASN SER SEQRES 19 A 414 SER VAL LYS VAL PRO MET MET PHE ARG SER GLY ILE TYR SEQRES 20 A 414 GLN VAL GLY TYR ASP ASP LYS LEU SER CYS THR ILE LEU SEQRES 21 A 414 GLU ILE PRO TYR GLN LYS ASN ILE THR ALA ILE PHE ILE SEQRES 22 A 414 LEU PRO ASP GLU GLY LYS LEU LYS HIS LEU GLU LYS GLY SEQRES 23 A 414 LEU GLN VAL ASP THR PHE SER ARG TRP LYS THR LEU LEU SEQRES 24 A 414 SER ARG ARG VAL VAL ASP VAL SER VAL PRO ARG LEU HIS SEQRES 25 A 414 MET THR GLY THR PHE ASP LEU LYS LYS THR LEU SER TYR SEQRES 26 A 414 ILE GLY VAL SER LYS ILE PHE GLU GLU HIS GLY ASP LEU SEQRES 27 A 414 THR LYS ILE ALA PRO HIS ARG SER LEU LYS VAL GLY GLU SEQRES 28 A 414 ALA VAL HIS LYS ALA GLU LEU LYS MET ASP GLU ARG GLY SEQRES 29 A 414 THR GLU GLY ALA ALA GLY THR GLY ALA GLN THR LEU PRO SEQRES 30 A 414 MET GLU THR PRO LEU VAL VAL LYS ILE ASP LYS PRO TYR SEQRES 31 A 414 LEU LEU LEU ILE TYR SER GLU LYS ILE PRO SER VAL LEU SEQRES 32 A 414 PHE LEU GLY LYS ILE VAL ASN PRO ILE GLY LYS SEQRES 1 B 414 GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 B 414 GLY HIS ILE GLU GLY ARG HIS MET LYS PRO SER PHE SER SEQRES 3 B 414 PRO ARG ASN TYR LYS ALA LEU SER GLU VAL GLN GLY TRP SEQRES 4 B 414 LYS GLN ARG MET ALA ALA LYS GLU LEU ALA ARG GLN ASN SEQRES 5 B 414 MET ASP LEU GLY PHE LYS LEU LEU LYS LYS LEU ALA PHE SEQRES 6 B 414 TYR ASN PRO GLY ARG ASN ILE PHE LEU SER PRO LEU SER SEQRES 7 B 414 ILE SER THR ALA PHE SER MET LEU CYS LEU GLY ALA GLN SEQRES 8 B 414 ASP SER THR LEU ASP GLU ILE LYS GLN GLY PHE ASN PHE SEQRES 9 B 414 ARG LYS MET PRO GLU LYS ASP LEU HIS GLU GLY PHE HIS SEQRES 10 B 414 TYR ILE ILE HIS GLU LEU THR GLN LYS THR GLN ASP LEU SEQRES 11 B 414 LYS LEU SER ILE GLY ASN THR LEU PHE ILE ASP GLN ARG SEQRES 12 B 414 LEU GLN PRO GLN ARG LYS PHE LEU GLU ASP ALA LYS ASN SEQRES 13 B 414 PHE TYR SER ALA GLU THR ILE LEU THR ASN PHE GLN ASN SEQRES 14 B 414 LEU GLU MET ALA GLN LYS GLN ILE ASN ASP PHE ILE SER SEQRES 15 B 414 GLN LYS THR HIS GLY LYS ILE ASN ASN LEU ILE GLU ASN SEQRES 16 B 414 ILE ASP PRO GLY THR VAL MET LEU LEU ALA ASN TYR ILE SEQRES 17 B 414 PHE PHE ARG ALA ARG TRP LYS HIS GLU PHE ASP PRO ASN SEQRES 18 B 414 VAL THR LYS GLU GLU ASP PHE PHE LEU GLU LYS ASN SER SEQRES 19 B 414 SER VAL LYS VAL PRO MET MET PHE ARG SER GLY ILE TYR SEQRES 20 B 414 GLN VAL GLY TYR ASP ASP LYS LEU SER CYS THR ILE LEU SEQRES 21 B 414 GLU ILE PRO TYR GLN LYS ASN ILE THR ALA ILE PHE ILE SEQRES 22 B 414 LEU PRO ASP GLU GLY LYS LEU LYS HIS LEU GLU LYS GLY SEQRES 23 B 414 LEU GLN VAL ASP THR PHE SER ARG TRP LYS THR LEU LEU SEQRES 24 B 414 SER ARG ARG VAL VAL ASP VAL SER VAL PRO ARG LEU HIS SEQRES 25 B 414 MET THR GLY THR PHE ASP LEU LYS LYS THR LEU SER TYR SEQRES 26 B 414 ILE GLY VAL SER LYS ILE PHE GLU GLU HIS GLY ASP LEU SEQRES 27 B 414 THR LYS ILE ALA PRO HIS ARG SER LEU LYS VAL GLY GLU SEQRES 28 B 414 ALA VAL HIS LYS ALA GLU LEU LYS MET ASP GLU ARG GLY SEQRES 29 B 414 THR GLU GLY ALA ALA GLY THR GLY ALA GLN THR LEU PRO SEQRES 30 B 414 MET GLU THR PRO LEU VAL VAL LYS ILE ASP LYS PRO TYR SEQRES 31 B 414 LEU LEU LEU ILE TYR SER GLU LYS ILE PRO SER VAL LEU SEQRES 32 B 414 PHE LEU GLY LYS ILE VAL ASN PRO ILE GLY LYS HET SO4 A 501 5 HET SO4 B 501 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *311(H2 O) HELIX 1 1 GLY A 38 ASN A 67 1 30 HELIX 2 2 SER A 75 CYS A 87 1 13 HELIX 3 3 GLN A 91 PHE A 102 1 12 HELIX 4 4 PRO A 108 THR A 124 1 17 HELIX 5 5 GLN A 147 SER A 159 1 13 HELIX 6 6 ASN A 169 THR A 185 1 17 HELIX 7 7 ASP A 219 THR A 223 5 5 HELIX 8 8 LYS A 279 LEU A 287 1 9 HELIX 9 9 GLN A 288 LEU A 298 1 11 HELIX 10 10 LEU A 319 LEU A 323 1 5 HELIX 11 11 SER A 324 GLY A 327 5 4 HELIX 12 12 SER A 329 GLU A 333 5 5 HELIX 13 13 GLU B 35 GLN B 37 5 3 HELIX 14 14 GLY B 38 ASN B 67 1 30 HELIX 15 15 SER B 75 LEU B 88 1 14 HELIX 16 16 GLN B 91 PHE B 102 1 12 HELIX 17 17 PRO B 108 THR B 124 1 17 HELIX 18 18 GLN B 147 SER B 159 1 13 HELIX 19 19 ASN B 169 THR B 185 1 17 HELIX 20 20 LYS B 281 GLY B 286 1 6 HELIX 21 21 VAL B 289 LEU B 298 1 10 HELIX 22 22 LEU B 319 TYR B 325 1 7 HELIX 23 23 SER B 329 GLU B 333 5 5 SHEET 1 A 7 ILE A 72 LEU A 74 0 SHEET 2 A 7 SER A 401 ILE A 408 -1 O LYS A 407 N ILE A 72 SHEET 3 A 7 TYR A 390 SER A 396 -1 N TYR A 390 O ILE A 408 SHEET 4 A 7 ILE A 268 PRO A 275 -1 N ILE A 273 O LEU A 391 SHEET 5 A 7 CYS A 257 PRO A 263 -1 N LEU A 260 O PHE A 272 SHEET 6 A 7 SER A 235 ASP A 252 -1 N ASP A 252 O CYS A 257 SHEET 7 A 7 LYS A 224 PHE A 229 -1 N LYS A 224 O MET A 240 SHEET 1 B 8 ILE A 72 LEU A 74 0 SHEET 2 B 8 SER A 401 ILE A 408 -1 O LYS A 407 N ILE A 72 SHEET 3 B 8 TYR A 390 SER A 396 -1 N TYR A 390 O ILE A 408 SHEET 4 B 8 ILE A 268 PRO A 275 -1 N ILE A 273 O LEU A 391 SHEET 5 B 8 CYS A 257 PRO A 263 -1 N LEU A 260 O PHE A 272 SHEET 6 B 8 SER A 235 ASP A 252 -1 N ASP A 252 O CYS A 257 SHEET 7 B 8 SER A 300 PRO A 309 -1 O VAL A 304 N GLY A 245 SHEET 8 B 8 LEU A 382 LYS A 385 1 O LEU A 382 N VAL A 303 SHEET 1 C 3 GLN A 125 LYS A 126 0 SHEET 2 C 3 LEU A 130 ASP A 141 -1 O LEU A 132 N GLN A 125 SHEET 3 C 3 GLU A 161 THR A 165 1 O GLU A 161 N LEU A 138 SHEET 1 D 5 GLN A 125 LYS A 126 0 SHEET 2 D 5 LEU A 130 ASP A 141 -1 O LEU A 132 N GLN A 125 SHEET 3 D 5 MET A 202 ALA A 212 -1 O TYR A 207 N GLY A 135 SHEET 4 D 5 GLU A 351 MET A 360 1 O VAL A 353 N ASN A 206 SHEET 5 D 5 LEU A 311 ASP A 318 -1 N LEU A 311 O MET A 360 SHEET 1 E 7 ILE B 72 LEU B 74 0 SHEET 2 E 7 SER B 401 ILE B 408 -1 O LEU B 405 N LEU B 74 SHEET 3 E 7 TYR B 390 SER B 396 -1 N TYR B 390 O ILE B 408 SHEET 4 E 7 ILE B 268 PRO B 275 -1 N ILE B 271 O LEU B 393 SHEET 5 E 7 CYS B 257 PRO B 263 -1 N LEU B 260 O PHE B 272 SHEET 6 E 7 SER B 235 ASP B 252 -1 N GLY B 250 O ILE B 259 SHEET 7 E 7 LYS B 224 PHE B 229 -1 N GLU B 226 O VAL B 238 SHEET 1 F 8 ILE B 72 LEU B 74 0 SHEET 2 F 8 SER B 401 ILE B 408 -1 O LEU B 405 N LEU B 74 SHEET 3 F 8 TYR B 390 SER B 396 -1 N TYR B 390 O ILE B 408 SHEET 4 F 8 ILE B 268 PRO B 275 -1 N ILE B 271 O LEU B 393 SHEET 5 F 8 CYS B 257 PRO B 263 -1 N LEU B 260 O PHE B 272 SHEET 6 F 8 SER B 235 ASP B 252 -1 N GLY B 250 O ILE B 259 SHEET 7 F 8 SER B 300 PRO B 309 -1 O VAL B 308 N MET B 241 SHEET 8 F 8 VAL B 383 LYS B 385 1 O VAL B 384 N SER B 307 SHEET 1 G 3 GLN B 125 LYS B 126 0 SHEET 2 G 3 LEU B 130 ASP B 141 -1 O LEU B 132 N GLN B 125 SHEET 3 G 3 GLU B 161 THR B 165 1 O GLU B 161 N LEU B 138 SHEET 1 H 5 GLN B 125 LYS B 126 0 SHEET 2 H 5 LEU B 130 ASP B 141 -1 O LEU B 132 N GLN B 125 SHEET 3 H 5 MET B 202 ALA B 212 -1 O ARG B 211 N LYS B 131 SHEET 4 H 5 GLU B 351 MET B 360 1 O GLU B 351 N LEU B 204 SHEET 5 H 5 LEU B 311 ASP B 318 -1 N LEU B 311 O MET B 360 SITE 1 AC1 5 ARG A 211 LYS A 359 ARG A 363 HOH A 755 SITE 2 AC1 5 HOH A 789 SITE 1 AC2 4 LYS B 320 HIS B 344 ARG B 345 SER B 346 CRYST1 133.550 152.100 61.450 90.00 97.52 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007488 0.000000 0.000988 0.00000 SCALE2 0.000000 0.006575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016415 0.00000