PDB Short entry for 4IP9 HEADER PROTEIN BINDING 09-JAN-13 4IP9 TITLE STRUCTURE OF NATIVE HUMAN SERUM AMYLOID A1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERUM AMYLOID A-1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SAA, AMYLOID PROTEIN A, AMYLOID FIBRIL PROTEIN AA, SERUM COMPND 5 AMYLOID PROTEIN A(2-104), SERUM AMYLOID PROTEIN A(3-104), SERUM COMPND 6 AMYLOID PROTEIN A(2-103), SERUM AMYLOID PROTEIN A(2-102), SERUM COMPND 7 AMYLOID PROTEIN A(4-101); COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOUBLE LAYER HEXAMERIC STRUCTURE, SECONDARY AMYLOID, HIGH DENSITY KEYWDS 2 LIPOPROTEIN, HUMAN SERUM, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.LU,P.D.SUN REVDAT 4 28-FEB-24 4IP9 1 REMARK SEQADV REVDAT 3 24-JAN-18 4IP9 1 AUTHOR REVDAT 2 14-MAY-14 4IP9 1 JRNL REVDAT 1 26-MAR-14 4IP9 0 JRNL AUTH J.LU,Y.YU,I.ZHU,Y.CHENG,P.D.SUN JRNL TITL STRUCTURAL MECHANISM OF SERUM AMYLOID A-MEDIATED JRNL TITL 2 INFLAMMATORY AMYLOIDOSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 5189 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24706838 JRNL DOI 10.1073/PNAS.1322357111 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 7768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.680 REMARK 3 FREE R VALUE TEST SET COUNT : 752 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2190 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2641 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1984 REMARK 3 BIN R VALUE (WORKING SET) : 0.2597 REMARK 3 BIN FREE R VALUE : 0.3079 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 206 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74580 REMARK 3 B22 (A**2) : 0.74580 REMARK 3 B33 (A**2) : -1.49150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.595 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1782 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2366 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 638 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 48 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 264 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1782 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 190 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1974 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.86 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|104 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.5135 -16.2567 43.3841 REMARK 3 T TENSOR REMARK 3 T11: -0.0356 T22: -0.2420 REMARK 3 T33: -0.0094 T12: -0.2130 REMARK 3 T13: -0.1830 T23: 0.2453 REMARK 3 L TENSOR REMARK 3 L11: 7.5296 L22: 4.0044 REMARK 3 L33: 5.6889 L12: -0.6010 REMARK 3 L13: 1.2979 L23: -0.9364 REMARK 3 S TENSOR REMARK 3 S11: 0.5102 S12: -0.8481 S13: -1.1896 REMARK 3 S21: 0.2490 S22: -0.0541 S23: -0.0313 REMARK 3 S31: 0.7172 S32: -0.3381 S33: -0.4561 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1 - B|104 } REMARK 3 ORIGIN FOR THE GROUP (A): -10.9944 -13.0755 17.6809 REMARK 3 T TENSOR REMARK 3 T11: -0.0913 T22: -0.1010 REMARK 3 T33: -0.0928 T12: 0.0528 REMARK 3 T13: -0.2246 T23: -0.1064 REMARK 3 L TENSOR REMARK 3 L11: 4.9320 L22: 4.7281 REMARK 3 L33: 5.0121 L12: -0.1008 REMARK 3 L13: 1.7898 L23: 0.6368 REMARK 3 S TENSOR REMARK 3 S11: 0.5613 S12: 0.7741 S13: -0.3763 REMARK 3 S21: -0.3764 S22: -0.3371 S23: 0.6718 REMARK 3 S31: -0.0931 S32: -0.4843 S33: -0.2242 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2000 MME, 0.1M TRIS (PH8.5) AND REMARK 280 0.2 M TRIMETHYLAMINE N-OXIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.09216 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.50667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.92500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.09216 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.50667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.92500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.09216 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 43.50667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.92500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.09216 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.50667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.09216 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.50667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.92500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.09216 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.50667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.18432 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 87.01333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.18432 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 87.01333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.18432 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 87.01333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.18432 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 87.01333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.18432 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 87.01333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.18432 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 87.01333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 31 CA GLY A 31 C 0.101 REMARK 500 GLY A 31 C GLY A 31 O 0.150 REMARK 500 SER A 32 C SER A 32 O -0.145 REMARK 500 ASP A 33 CB ASP A 33 CG -0.221 REMARK 500 ASP A 33 CA ASP A 33 C -0.204 REMARK 500 ASP A 33 C ASP A 33 O -0.150 REMARK 500 LYS A 34 C LYS A 34 O -0.136 REMARK 500 TYR A 35 CG TYR A 35 CD2 -0.096 REMARK 500 TYR A 35 CG TYR A 35 CD1 -0.175 REMARK 500 TYR A 35 CD1 TYR A 35 CE1 -0.188 REMARK 500 TYR A 35 CE1 TYR A 35 CZ -0.204 REMARK 500 TYR A 35 CZ TYR A 35 OH -0.118 REMARK 500 TYR A 35 CZ TYR A 35 CE2 -0.220 REMARK 500 TYR A 35 CE2 TYR A 35 CD2 -0.162 REMARK 500 PHE A 36 CG PHE A 36 CD2 -0.132 REMARK 500 PHE A 36 CG PHE A 36 CD1 -0.148 REMARK 500 PHE A 36 CD1 PHE A 36 CE1 -0.180 REMARK 500 PHE A 36 CE1 PHE A 36 CZ -0.231 REMARK 500 PHE A 36 CZ PHE A 36 CE2 -0.209 REMARK 500 PHE A 36 CE2 PHE A 36 CD2 -0.212 REMARK 500 PHE A 36 C PHE A 36 O -0.148 REMARK 500 HIS A 37 N HIS A 37 CA -0.138 REMARK 500 HIS A 37 CA HIS A 37 CB -0.168 REMARK 500 HIS A 37 C HIS A 37 O -0.189 REMARK 500 ALA A 38 C ALA A 38 O -0.206 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 31 N - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 GLY A 31 CA - C - O ANGL. DEV. = 17.3 DEGREES REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 LYS A 34 CD - CE - NZ ANGL. DEV. = -21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 93 -4.33 -56.03 REMARK 500 ASN B 93 -5.89 -55.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P4C A 201 REMARK 610 P4C A 202 REMARK 610 P4C A 203 REMARK 610 P4C B 201 REMARK 610 P4C B 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IP8 RELATED DB: PDB DBREF 4IP9 A 1 104 UNP P0DJI8 SAA1_HUMAN 19 122 DBREF 4IP9 B 1 104 UNP P0DJI8 SAA1_HUMAN 19 122 SEQADV 4IP9 MET A -6 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS A -5 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS A -4 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS A -3 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS A -2 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS A -1 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS A 0 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 MET B -6 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS B -5 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS B -4 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS B -3 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS B -2 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS B -1 UNP P0DJI8 EXPRESSION TAG SEQADV 4IP9 HIS B 0 UNP P0DJI8 EXPRESSION TAG SEQRES 1 A 111 MET HIS HIS HIS HIS HIS HIS ARG SER PHE PHE SER PHE SEQRES 2 A 111 LEU GLY GLU ALA PHE ASP GLY ALA ARG ASP MET TRP ARG SEQRES 3 A 111 ALA TYR SER ASP MET ARG GLU ALA ASN TYR ILE GLY SER SEQRES 4 A 111 ASP LYS TYR PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA SEQRES 5 A 111 LYS ARG GLY PRO GLY GLY VAL TRP ALA ALA GLU ALA ILE SEQRES 6 A 111 SER ASP ALA ARG GLU ASN ILE GLN ARG PHE PHE GLY HIS SEQRES 7 A 111 GLY ALA GLU ASP SER LEU ALA ASP GLN ALA ALA ASN GLU SEQRES 8 A 111 TRP GLY ARG SER GLY LYS ASP PRO ASN HIS PHE ARG PRO SEQRES 9 A 111 ALA GLY LEU PRO GLU LYS TYR SEQRES 1 B 111 MET HIS HIS HIS HIS HIS HIS ARG SER PHE PHE SER PHE SEQRES 2 B 111 LEU GLY GLU ALA PHE ASP GLY ALA ARG ASP MET TRP ARG SEQRES 3 B 111 ALA TYR SER ASP MET ARG GLU ALA ASN TYR ILE GLY SER SEQRES 4 B 111 ASP LYS TYR PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA SEQRES 5 B 111 LYS ARG GLY PRO GLY GLY VAL TRP ALA ALA GLU ALA ILE SEQRES 6 B 111 SER ASP ALA ARG GLU ASN ILE GLN ARG PHE PHE GLY HIS SEQRES 7 B 111 GLY ALA GLU ASP SER LEU ALA ASP GLN ALA ALA ASN GLU SEQRES 8 B 111 TRP GLY ARG SER GLY LYS ASP PRO ASN HIS PHE ARG PRO SEQRES 9 B 111 ALA GLY LEU PRO GLU LYS TYR HET P4C A 201 12 HET P4C A 202 12 HET P4C A 203 10 HET P4C A 204 22 HET P4C B 201 12 HET P4C B 202 12 HETNAM P4C O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL HETSYN P4C POLYETHYLENE 400 FORMUL 3 P4C 6(C14 H28 O8) FORMUL 9 HOH *6(H2 O) HELIX 1 1 ARG A 1 ASN A 28 1 28 HELIX 2 2 GLY A 31 ARG A 47 1 17 HELIX 3 3 GLY A 48 GLY A 70 1 23 HELIX 4 4 GLY A 72 SER A 88 1 17 HELIX 5 5 ASP A 91 ARG A 96 5 6 HELIX 6 6 SER B 2 ASN B 28 1 27 HELIX 7 7 SER B 32 ARG B 47 1 16 HELIX 8 8 GLY B 48 GLY B 70 1 23 HELIX 9 9 GLY B 72 SER B 88 1 17 HELIX 10 10 ASP B 91 ARG B 96 5 6 SITE 1 AC1 3 PHE A 11 ARG A 15 TRP A 18 SITE 1 AC2 5 ARG A 1 PHE A 4 SER A 5 TRP A 18 SITE 2 AC2 5 ARG A 25 SITE 1 AC3 4 TRP A 18 ILE A 58 P4C A 204 P4C B 202 SITE 1 AC4 7 PHE A 4 ARG A 62 ILE A 65 GLN A 66 SITE 2 AC4 7 P4C A 203 PHE B 4 ALA B 61 SITE 1 AC5 6 ARG B 1 PHE B 4 SER B 5 TRP B 18 SITE 2 AC5 6 ARG B 25 GLN B 66 SITE 1 AC6 4 P4C A 203 PHE B 11 ARG B 15 TRP B 18 CRYST1 93.850 93.850 130.520 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010655 0.006152 0.000000 0.00000 SCALE2 0.000000 0.012304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007662 0.00000