PDB Short entry for 4IR9 HEADER TRANSFERASE/DNA 14-JAN-13 4IR9 TITLE POLYMERASE-DNA COMPLEX CAVEAT 4IR9 THE LIGAND G DT 837 HAS CHIRALITY NOT CORRESPONDING TO THE CAVEAT 2 4IR9 LIGAND DEFINITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*TP*CP*TP*CP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'); COMPND 4 CHAIN: G, B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'); COMPND 13 CHAIN: H; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA POLYMERASE IV; COMPND 17 CHAIN: F, A; COMPND 18 SYNONYM: POL IV; COMPND 19 EC: 2.7.7.7; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 4; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 83333; SOURCE 10 STRAIN: K12; SOURCE 11 GENE: B0231, DINB, DINP, JW0221; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: C41DE3 KEYWDS DNA POLYMERASE, Y-FAMILY, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SHARMA,D.T.NAIR REVDAT 4 28-FEB-24 4IR9 1 REMARK SEQADV LINK REVDAT 3 29-MAY-13 4IR9 1 JRNL REVDAT 2 24-APR-13 4IR9 1 REMARK REVDAT 1 17-APR-13 4IR9 0 JRNL AUTH A.SHARMA,J.KOTTUR,N.NARAYANAN,D.T.NAIR JRNL TITL A STRATEGICALLY LOCATED SERINE RESIDUE IS CRITICAL FOR THE JRNL TITL 2 MUTATOR ACTIVITY OF DNA POLYMERASE IV FROM ESCHERICHIA COLI. JRNL REF NUCLEIC ACIDS RES. V. 41 5104 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23525461 JRNL DOI 10.1093/NAR/GKT146 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 44007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5374 REMARK 3 NUCLEIC ACID ATOMS : 1352 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.69000 REMARK 3 B22 (A**2) : -2.73000 REMARK 3 B33 (A**2) : 6.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.328 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7055 ; 0.014 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 6125 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9829 ; 1.920 ; 1.862 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14056 ; 1.191 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 7.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;34.845 ;22.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 982 ;19.882 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;19.263 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1039 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6966 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1620 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 RESIDUE RANGE : A 77 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): -28.6625 -8.7079 3.8953 REMARK 3 T TENSOR REMARK 3 T11: 0.3510 T22: 0.2123 REMARK 3 T33: 0.0202 T12: 0.0515 REMARK 3 T13: -0.0039 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.9601 L22: 0.8702 REMARK 3 L33: 0.5419 L12: 0.5150 REMARK 3 L13: -0.3351 L23: -0.1462 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.1105 S13: -0.0230 REMARK 3 S21: 0.1453 S22: -0.0341 S23: -0.1171 REMARK 3 S31: 0.0970 S32: 0.1191 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6399 7.9935 -14.6119 REMARK 3 T TENSOR REMARK 3 T11: 0.3142 T22: 0.2225 REMARK 3 T33: 0.0498 T12: -0.0268 REMARK 3 T13: 0.0635 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.0449 L22: 1.1223 REMARK 3 L33: 1.1583 L12: -0.2856 REMARK 3 L13: -0.5848 L23: 0.4685 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: -0.0291 S13: 0.1857 REMARK 3 S21: -0.0684 S22: -0.0185 S23: -0.1282 REMARK 3 S31: -0.1304 S32: 0.1450 S33: -0.0959 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): -52.5407 -10.0351 -5.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.2397 REMARK 3 T33: 0.0291 T12: -0.0083 REMARK 3 T13: 0.0555 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.4960 L22: 0.8894 REMARK 3 L33: 1.7695 L12: -0.2874 REMARK 3 L13: 0.6056 L23: -0.2955 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: -0.0102 S13: 0.1442 REMARK 3 S21: -0.0261 S22: -0.0884 S23: 0.0313 REMARK 3 S31: 0.1304 S32: -0.2077 S33: -0.0281 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5464 -15.8909 -32.2529 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.2274 REMARK 3 T33: 0.0174 T12: 0.0753 REMARK 3 T13: 0.0613 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.6459 L22: 1.1861 REMARK 3 L33: 1.3498 L12: -0.1956 REMARK 3 L13: 0.4115 L23: -0.2776 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: 0.1429 S13: 0.0135 REMARK 3 S21: 0.0108 S22: -0.1228 S23: 0.0152 REMARK 3 S31: 0.1338 S32: 0.2036 S33: 0.0424 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 10 REMARK 3 RESIDUE RANGE : F 77 F 166 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5711 -14.5176 -69.9847 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1813 REMARK 3 T33: 0.1869 T12: 0.0005 REMARK 3 T13: 0.0621 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.5371 L22: 1.1382 REMARK 3 L33: 1.0202 L12: -0.4608 REMARK 3 L13: 0.4960 L23: -0.2791 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0655 S13: -0.0072 REMARK 3 S21: -0.0815 S22: -0.0990 S23: -0.1998 REMARK 3 S31: 0.0278 S32: 0.0298 S33: 0.0929 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 11 F 76 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5252 2.6132 -69.9711 REMARK 3 T TENSOR REMARK 3 T11: 0.2066 T22: 0.1741 REMARK 3 T33: 0.2151 T12: 0.0330 REMARK 3 T13: -0.0281 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.8010 L22: 1.3628 REMARK 3 L33: 0.3476 L12: -0.0680 REMARK 3 L13: -0.4482 L23: 0.2484 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.0769 S13: 0.0661 REMARK 3 S21: -0.1008 S22: -0.1705 S23: 0.0058 REMARK 3 S31: -0.0768 S32: -0.1103 S33: 0.0789 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 167 F 231 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8262 -15.5705 -44.7444 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.1621 REMARK 3 T33: 0.1846 T12: 0.0136 REMARK 3 T13: -0.0310 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.5982 L22: 1.1040 REMARK 3 L33: 0.6828 L12: -0.5020 REMARK 3 L13: -0.2357 L23: 0.5912 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: -0.0561 S13: -0.0114 REMARK 3 S21: 0.1274 S22: -0.0824 S23: -0.0905 REMARK 3 S31: -0.0520 S32: -0.1184 S33: 0.1866 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 241 F 341 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4131 -19.8964 -64.6631 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.3066 REMARK 3 T33: 0.0867 T12: -0.0549 REMARK 3 T13: 0.0508 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 1.4653 L22: 1.1340 REMARK 3 L33: 0.3523 L12: -0.5612 REMARK 3 L13: -0.2959 L23: -0.1970 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.0585 S13: 0.0728 REMARK 3 S21: -0.1125 S22: 0.1063 S23: -0.0036 REMARK 3 S31: 0.1192 S32: -0.2250 S33: -0.0323 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 837 B 854 REMARK 3 RESIDUE RANGE : C 857 C 873 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : A 402 A 402 REMARK 3 RESIDUE RANGE : A 403 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): -42.8657 -20.7916 -24.1978 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.2169 REMARK 3 T33: 0.0430 T12: 0.0084 REMARK 3 T13: 0.0331 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.2897 L22: 1.1420 REMARK 3 L33: 0.1277 L12: 0.5714 REMARK 3 L13: 0.1920 L23: 0.3778 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0411 S13: 0.0109 REMARK 3 S21: 0.0233 S22: -0.0519 S23: 0.0034 REMARK 3 S31: 0.0196 S32: -0.0334 S33: 0.0127 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 837 G 854 REMARK 3 RESIDUE RANGE : H 860 H 873 REMARK 3 RESIDUE RANGE : F 401 F 401 REMARK 3 RESIDUE RANGE : F 402 F 402 REMARK 3 RESIDUE RANGE : F 403 F 403 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7794 -24.1679 -52.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.1832 T22: 0.2949 REMARK 3 T33: 0.1309 T12: 0.0162 REMARK 3 T13: 0.0496 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 0.6708 L22: 1.1419 REMARK 3 L33: 0.2700 L12: 0.6521 REMARK 3 L13: -0.2319 L23: -0.5333 REMARK 3 S TENSOR REMARK 3 S11: -0.0923 S12: -0.1699 S13: -0.0252 REMARK 3 S21: -0.0240 S22: 0.0326 S23: -0.1074 REMARK 3 S31: -0.0140 S32: -0.0827 S33: 0.0597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MPD , PH 4.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.52000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN F 342 REMARK 465 MET F 343 REMARK 465 GLU F 344 REMARK 465 ARG F 345 REMARK 465 GLN F 346 REMARK 465 LEU F 347 REMARK 465 VAL F 348 REMARK 465 LEU F 349 REMARK 465 GLY F 350 REMARK 465 LEU F 351 REMARK 465 GLN A 342 REMARK 465 MET A 343 REMARK 465 GLU A 344 REMARK 465 ARG A 345 REMARK 465 GLN A 346 REMARK 465 LEU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 64 CG CD CE NZ REMARK 470 LYS F 205 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' DT G 837 O HOH G 902 1.84 REMARK 500 N THR F 129 O HOH F 550 1.89 REMARK 500 O4' DT H 863 O HOH H 912 1.94 REMARK 500 N THR A 129 O HOH A 521 1.96 REMARK 500 O THR F 129 O ASN F 132 1.97 REMARK 500 NZ LYS F 157 O HOH F 549 1.99 REMARK 500 N LEU F 331 O HOH F 523 2.05 REMARK 500 O LYS F 291 O HOH F 523 2.05 REMARK 500 O4 DT H 866 O HOH H 907 2.08 REMARK 500 N7 DG C 869 O HOH C 907 2.10 REMARK 500 O LEU F 331 O HOH F 523 2.14 REMARK 500 OP1 DC G 838 O HOH G 902 2.15 REMARK 500 O HOH H 911 O HOH F 534 2.17 REMARK 500 O THR A 129 O ASN A 132 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP1 DG C 862 OG SER A 118 2445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 837 N1 DT G 837 C2 0.061 REMARK 500 DT G 837 C5 DT G 837 C6 0.051 REMARK 500 DT G 839 C5 DT G 839 C6 0.056 REMARK 500 DT G 844 N3 DT G 844 C4 -0.072 REMARK 500 DT G 844 C6 DT G 844 N1 -0.064 REMARK 500 DT B 837 N1 DT B 837 C2 0.048 REMARK 500 DT B 837 C4 DT B 837 C5 0.054 REMARK 500 DT B 837 C5 DT B 837 C6 0.051 REMARK 500 DT B 839 N1 DT B 839 C2 0.049 REMARK 500 DT B 839 C5 DT B 839 C6 0.057 REMARK 500 DT B 844 N3 DT B 844 C4 -0.078 REMARK 500 DT B 844 C5 DT B 844 C6 0.047 REMARK 500 DT B 847 N1 DT B 847 C2 0.086 REMARK 500 DT B 847 N3 DT B 847 C4 -0.052 REMARK 500 DT B 847 C4 DT B 847 C5 0.084 REMARK 500 DT B 847 C5 DT B 847 C6 0.057 REMARK 500 DT B 847 C2 DT B 847 O2 0.053 REMARK 500 DT C 858 C5 DT C 858 C6 0.054 REMARK 500 DT C 863 N1 DT C 863 C2 0.072 REMARK 500 DT C 863 N3 DT C 863 C4 -0.052 REMARK 500 DT C 863 C4 DT C 863 C5 0.062 REMARK 500 DT C 863 C5 DT C 863 C6 0.075 REMARK 500 DT C 866 C5 DT C 866 C6 0.051 REMARK 500 DT C 866 C2 DT C 866 O2 0.049 REMARK 500 DT H 863 N3 DT H 863 C4 -0.060 REMARK 500 DT H 863 C4 DT H 863 C5 0.058 REMARK 500 DT H 863 C5 DT H 863 C6 0.059 REMARK 500 DT H 866 O3' DT H 866 C3' -0.055 REMARK 500 DT H 866 N3 DT H 866 C4 -0.060 REMARK 500 DT H 866 C5 DT H 866 C6 0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT G 837 O4' - C4' - C3' ANGL. DEV. = 3.9 DEGREES REMARK 500 DT G 837 C5' - C4' - C3' ANGL. DEV. = 12.8 DEGREES REMARK 500 DT G 837 C5' - C4' - O4' ANGL. DEV. = 10.9 DEGREES REMARK 500 DT G 837 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT G 837 N1 - C2 - N3 ANGL. DEV. = 7.0 DEGREES REMARK 500 DT G 837 C2 - N3 - C4 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT G 837 N3 - C4 - C5 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT G 837 C5 - C6 - N1 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT G 837 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT G 837 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT G 839 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT G 839 N1 - C2 - N3 ANGL. DEV. = 7.1 DEGREES REMARK 500 DT G 839 C2 - N3 - C4 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT G 839 N3 - C4 - C5 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT G 839 C5 - C4 - O4 ANGL. DEV. = -5.1 DEGREES REMARK 500 DC G 840 O5' - P - OP1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG G 841 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT G 844 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT G 844 C6 - N1 - C2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DT G 844 N1 - C2 - N3 ANGL. DEV. = 8.9 DEGREES REMARK 500 DT G 844 C2 - N3 - C4 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT G 844 N1 - C2 - O2 ANGL. DEV. = -8.5 DEGREES REMARK 500 DT G 844 N3 - C4 - O4 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT G 844 C5 - C4 - O4 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT G 847 N1 - C2 - N3 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT G 847 C2 - N3 - C4 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT G 847 N3 - C4 - C5 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT G 847 C5 - C4 - O4 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT G 847 C4 - C5 - C7 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT G 847 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA G 848 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT B 837 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT B 837 N1 - C2 - N3 ANGL. DEV. = 6.9 DEGREES REMARK 500 DT B 837 C2 - N3 - C4 ANGL. DEV. = -6.9 DEGREES REMARK 500 DT B 837 N3 - C4 - C5 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT B 837 C5 - C6 - N1 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT B 837 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT B 837 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT B 837 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT B 839 N1 - C1' - C2' ANGL. DEV. = -12.3 DEGREES REMARK 500 DT B 839 O4' - C1' - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 DT B 839 N1 - C2 - N3 ANGL. DEV. = 7.1 DEGREES REMARK 500 DT B 839 C2 - N3 - C4 ANGL. DEV. = -6.4 DEGREES REMARK 500 DT B 839 N3 - C4 - C5 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT B 839 C5 - C4 - O4 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT B 844 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT B 844 C6 - N1 - C2 ANGL. DEV. = -3.0 DEGREES REMARK 500 DT B 844 N1 - C2 - N3 ANGL. DEV. = 8.9 DEGREES REMARK 500 DT B 844 C2 - N3 - C4 ANGL. DEV. = -7.7 DEGREES REMARK 500 DT B 844 N3 - C4 - C5 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 92 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG F 38 36.24 74.32 REMARK 500 ALA F 56 -5.46 79.19 REMARK 500 SER F 101 179.90 178.73 REMARK 500 ASP F 111 38.64 -96.96 REMARK 500 THR F 129 -45.54 77.43 REMARK 500 GLU F 133 -51.76 95.51 REMARK 500 LYS F 205 28.37 -78.94 REMARK 500 ASP F 230 88.18 -153.50 REMARK 500 ASN F 235 -70.44 -86.34 REMARK 500 SER F 236 -19.56 82.68 REMARK 500 LYS F 278 76.81 -160.01 REMARK 500 ASP F 293 -50.36 -2.27 REMARK 500 TRP F 304 135.08 -174.18 REMARK 500 ARG F 323 25.02 -141.70 REMARK 500 CYS A 11 51.40 27.98 REMARK 500 ALA A 56 -11.39 77.51 REMARK 500 SER A 101 -178.91 173.13 REMARK 500 THR A 129 -30.66 78.50 REMARK 500 GLU A 133 -17.95 75.18 REMARK 500 LYS A 217 -45.58 -26.51 REMARK 500 ASP A 230 93.29 -168.32 REMARK 500 ARG A 232 153.52 130.47 REMARK 500 VAL A 234 -173.34 -67.12 REMARK 500 ASN A 235 -55.05 -156.71 REMARK 500 SER A 236 -16.20 50.20 REMARK 500 LEU A 239 -66.35 -100.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE F 292 ASP F 293 143.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC H 873 O3' REMARK 620 2 ASP F 103 OD2 73.3 REMARK 620 3 GLU F 104 OE1 105.1 130.9 REMARK 620 4 XG4 F 401 O1A 96.0 96.0 132.2 REMARK 620 5 HOH F 518 O 119.2 157.7 66.6 65.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 MET F 9 O 87.6 REMARK 620 3 ASP F 103 OD1 91.3 92.9 REMARK 620 4 XG4 F 401 O2B 171.0 101.4 89.3 REMARK 620 5 XG4 F 401 O1G 96.6 99.6 165.5 81.0 REMARK 620 6 XG4 F 401 O1A 97.2 171.6 80.2 74.0 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 8 OD2 50.7 REMARK 620 3 MET A 9 O 105.2 72.4 REMARK 620 4 ASP A 103 OD1 85.6 116.0 79.6 REMARK 620 5 XG4 A 401 O1G 109.8 77.0 97.6 164.5 REMARK 620 6 XG4 A 401 O1A 83.4 124.3 161.1 84.5 95.0 REMARK 620 7 XG4 A 401 O2B 160.7 148.2 89.3 84.7 80.0 79.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 103 OD2 86.0 REMARK 620 3 GLU A 104 OE2 104.3 75.1 REMARK 620 4 XG4 A 401 O1A 104.6 77.7 138.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XG4 F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XG4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IR1 RELATED DB: PDB REMARK 900 RELATED ID: 4IRC RELATED DB: PDB REMARK 900 RELATED ID: 4IRD RELATED DB: PDB REMARK 900 RELATED ID: 4IRK RELATED DB: PDB DBREF 4IR9 F 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 4IR9 A 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 4IR9 G 837 854 PDB 4IR9 4IR9 837 854 DBREF 4IR9 B 837 854 PDB 4IR9 4IR9 837 854 DBREF 4IR9 C 857 873 PDB 4IR9 4IR9 857 873 DBREF 4IR9 H 860 873 PDB 4IR9 4IR9 860 873 SEQADV 4IR9 GLY F 0 UNP Q47155 EXPRESSION TAG SEQADV 4IR9 SER F 1 UNP Q47155 EXPRESSION TAG SEQADV 4IR9 GLY A 0 UNP Q47155 EXPRESSION TAG SEQADV 4IR9 SER A 1 UNP Q47155 EXPRESSION TAG SEQRES 1 G 18 DT DC DT DC DG DG DG DT DC DC DT DA DG SEQRES 2 G 18 DG DA DC DC DC SEQRES 1 B 18 DT DC DT DC DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC SEQRES 1 C 17 DC DT DA DG DG DG DT DC DC DT DA DG DG SEQRES 2 C 17 DA DC DC DC SEQRES 1 H 14 DG DG DG DT DC DC DT DA DG DG DA DC DC SEQRES 2 H 14 DC SEQRES 1 F 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 F 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 F 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 F 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 F 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 F 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 F 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 F 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 F 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 F 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 F 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 F 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 F 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 F 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 F 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 F 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 F 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 F 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 F 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 F 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 F 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 F 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 F 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 F 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 F 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 F 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 F 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 F 352 LEU SEQRES 1 A 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 A 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 A 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 A 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 A 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 A 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 A 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 A 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 A 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 A 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 A 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 A 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 A 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 A 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 A 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 A 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 A 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 A 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 A 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 A 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 A 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 A 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 A 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 A 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 A 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 A 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 A 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 A 352 LEU HET XG4 F 401 31 HET MG F 402 1 HET MG F 403 1 HET XG4 A 401 31 HET MG A 402 1 HET MG A 403 1 HETNAM XG4 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 XG4 PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE HETNAM MG MAGNESIUM ION FORMUL 7 XG4 2(C10 H17 N6 O12 P3) FORMUL 8 MG 4(MG 2+) FORMUL 13 HOH *135(H2 O) HELIX 1 1 CYS F 11 ASN F 21 1 11 HELIX 2 2 PRO F 22 ARG F 25 5 4 HELIX 3 3 ASN F 45 LYS F 50 1 6 HELIX 4 4 PRO F 58 CYS F 66 1 9 HELIX 5 5 ARG F 75 ARG F 92 1 18 HELIX 6 6 SER F 118 GLN F 135 1 18 HELIX 7 7 VAL F 145 SER F 153 1 9 HELIX 8 8 GLU F 168 LEU F 176 1 9 HELIX 9 9 PRO F 177 ILE F 181 5 5 HELIX 10 10 GLY F 185 MET F 195 1 11 HELIX 11 11 THR F 199 LYS F 205 1 7 HELIX 12 12 ASP F 207 GLY F 216 1 10 HELIX 13 13 GLY F 216 GLN F 227 1 12 HELIX 14 14 HIS F 255 LYS F 276 1 22 HELIX 15 15 ASN F 308 ARG F 324 1 17 HELIX 16 16 CYS A 11 ASN A 21 1 11 HELIX 17 17 PRO A 22 ARG A 25 5 4 HELIX 18 18 ASN A 45 PHE A 51 1 7 HELIX 19 19 PRO A 58 CYS A 66 1 9 HELIX 20 20 ARG A 75 THR A 94 1 20 HELIX 21 21 SER A 118 GLN A 135 1 18 HELIX 22 22 VAL A 145 MET A 155 1 11 HELIX 23 23 GLU A 168 THR A 175 1 8 HELIX 24 24 PRO A 177 ILE A 181 5 5 HELIX 25 25 GLY A 185 MET A 195 1 11 HELIX 26 26 THR A 199 LYS A 205 1 7 HELIX 27 27 ASP A 207 PHE A 215 1 9 HELIX 28 28 GLY A 216 SER A 226 1 11 HELIX 29 29 HIS A 255 LYS A 278 1 24 HELIX 30 30 ASN A 308 ARG A 324 1 17 SHEET 1 A 5 ILE F 97 SER F 101 0 SHEET 2 A 5 GLU F 104 ASP F 108 -1 O TYR F 106 N GLU F 98 SHEET 3 A 5 ILE F 4 MET F 9 -1 N ILE F 5 O LEU F 107 SHEET 4 A 5 ALA F 138 ALA F 143 -1 O ALA F 143 N ILE F 4 SHEET 5 A 5 GLN F 161 VAL F 163 1 O PHE F 162 N VAL F 142 SHEET 1 B 3 ILE F 41 ALA F 44 0 SHEET 2 B 3 ILE F 29 GLY F 32 -1 N ILE F 31 O SER F 42 SHEET 3 B 3 THR F 70 LEU F 72 1 O LEU F 72 N ALA F 30 SHEET 1 C 4 SER F 242 ILE F 253 0 SHEET 2 C 4 VAL F 329 THR F 337 -1 O LEU F 334 N VAL F 245 SHEET 3 C 4 ARG F 285 PHE F 292 -1 N LYS F 291 O ARG F 330 SHEET 4 C 4 GLN F 297 VAL F 303 -1 O GLN F 300 N VAL F 288 SHEET 1 D 5 ILE A 97 SER A 101 0 SHEET 2 D 5 GLU A 104 ASP A 108 -1 O TYR A 106 N GLU A 98 SHEET 3 D 5 ILE A 4 MET A 9 -1 N VAL A 7 O ALA A 105 SHEET 4 D 5 ALA A 138 ALA A 143 -1 O ALA A 143 N ILE A 4 SHEET 5 D 5 GLN A 161 VAL A 163 1 O PHE A 162 N VAL A 142 SHEET 1 E 3 ILE A 41 ALA A 44 0 SHEET 2 E 3 ILE A 29 GLY A 32 -1 N ILE A 31 O SER A 42 SHEET 3 E 3 THR A 70 LEU A 72 1 O LEU A 72 N ALA A 30 SHEET 1 F 4 SER A 242 ILE A 253 0 SHEET 2 F 4 VAL A 329 THR A 337 -1 O LEU A 334 N VAL A 245 SHEET 3 F 4 ARG A 285 PHE A 292 -1 N LYS A 289 O GLY A 333 SHEET 4 F 4 GLN A 297 VAL A 303 -1 O GLN A 300 N VAL A 288 LINK O3' DC H 873 MG MG F 403 1555 1555 2.85 LINK OD1 ASP F 8 MG MG F 402 1555 1555 2.00 LINK O MET F 9 MG MG F 402 1555 1555 2.17 LINK OD1 ASP F 103 MG MG F 402 1555 1555 2.24 LINK OD2 ASP F 103 MG MG F 403 1555 1555 2.48 LINK OE1 GLU F 104 MG MG F 403 1555 1555 1.91 LINK O2B XG4 F 401 MG MG F 402 1555 1555 2.03 LINK O1G XG4 F 401 MG MG F 402 1555 1555 2.16 LINK O1A XG4 F 401 MG MG F 402 1555 1555 2.37 LINK O1A XG4 F 401 MG MG F 403 1555 1555 2.70 LINK MG MG F 403 O HOH F 518 1555 1555 2.46 LINK OD1 ASP A 8 MG MG A 402 1555 1555 2.46 LINK OD2 ASP A 8 MG MG A 402 1555 1555 2.61 LINK OD1 ASP A 8 MG MG A 403 1555 1555 2.07 LINK O MET A 9 MG MG A 402 1555 1555 2.25 LINK OD1 ASP A 103 MG MG A 402 1555 1555 2.22 LINK OD2 ASP A 103 MG MG A 403 1555 1555 2.95 LINK OE2 GLU A 104 MG MG A 403 1555 1555 2.02 LINK O1G XG4 A 401 MG MG A 402 1555 1555 2.08 LINK O1A XG4 A 401 MG MG A 402 1555 1555 2.13 LINK O2B XG4 A 401 MG MG A 402 1555 1555 2.31 LINK O1A XG4 A 401 MG MG A 403 1555 1555 1.79 CISPEP 1 LYS F 157 PRO F 158 0 1.06 CISPEP 2 LYS A 157 PRO A 158 0 0.74 SITE 1 AC1 24 ASP F 8 MET F 9 ASP F 10 CYS F 11 SITE 2 AC1 24 PHE F 12 PHE F 13 SER F 42 THR F 43 SITE 3 AC1 24 ARG F 49 SER F 55 ASP F 103 LYS F 157 SITE 4 AC1 24 MG F 402 MG F 403 HOH F 502 HOH F 508 SITE 5 AC1 24 HOH F 518 HOH F 540 HOH F 549 HOH F 556 SITE 6 AC1 24 HOH F 557 DC G 840 DG G 841 DC H 873 SITE 1 AC2 4 ASP F 8 MET F 9 ASP F 103 XG4 F 401 SITE 1 AC3 6 ASP F 8 ASP F 103 GLU F 104 XG4 F 401 SITE 2 AC3 6 HOH F 518 DC H 873 SITE 1 AC4 18 ASP A 8 MET A 9 ASP A 10 CYS A 11 SITE 2 AC4 18 PHE A 12 PHE A 13 SER A 42 THR A 43 SITE 3 AC4 18 ARG A 49 SER A 55 ASP A 103 GLU A 104 SITE 4 AC4 18 LYS A 157 MG A 402 MG A 403 DC B 840 SITE 5 AC4 18 DG B 841 DC C 873 SITE 1 AC5 5 ASP A 8 MET A 9 ASP A 103 XG4 A 401 SITE 2 AC5 5 MG A 403 SITE 1 AC6 5 ASP A 8 ASP A 103 GLU A 104 XG4 A 401 SITE 2 AC6 5 MG A 402 CRYST1 86.760 57.040 110.700 90.00 94.76 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011526 0.000000 0.000960 0.00000 SCALE2 0.000000 0.017532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009065 0.00000