PDB Short entry for 4IS1 HEADER METAL BINDING PROTEIN/DNA 16-JAN-13 4IS1 TITLE CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP COMPND 3 *CP*A)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP COMPND 8 *CP*A)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ZINC FINGER PROTEIN 217; COMPND 13 CHAIN: C, D; COMPND 14 FRAGMENT: ZINC FINGERS 6 AND 7 (UNP RESIDUES 469-523); COMPND 15 SYNONYM: TRANSCRIPTION FACTOR ZNF217; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: ZNF217, ZABC1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS ZINC FINGER, TRANSCRIPTION FACTOR, METAL BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.S.VANDEVENNE,D.A.JACQUES,J.M.GUSS,J.P.MACKAY REVDAT 4 08-NOV-23 4IS1 1 REMARK LINK REVDAT 3 18-DEC-19 4IS1 1 SOURCE JRNL SEQADV REVDAT 2 06-MAR-13 4IS1 1 REMARK REVDAT 1 27-FEB-13 4IS1 0 JRNL AUTH M.VANDEVENNE,D.A.JACQUES,C.ARTUZ,C.D.NGUYEN,A.H.KWAN, JRNL AUTH 2 D.J.SEGAL,J.M.MATTHEWS,M.CROSSLEY,J.M.GUSS,J.P.MACKAY JRNL TITL NEW INSIGHTS INTO DNA RECOGNITION BY ZINC FINGERS REVEALED JRNL TITL 2 BY STRUCTURAL ANALYSIS OF THE ONCOPROTEIN ZNF217. JRNL REF J.BIOL.CHEM. V. 288 10616 2013 JRNL REFN ESSN 1083-351X JRNL PMID 23436653 JRNL DOI 10.1074/JBC.M112.441451 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 14519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.4350 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.5670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 909 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.91000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : 6.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1858 ; 0.010 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 1294 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2673 ; 1.380 ; 1.525 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3005 ; 1.534 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 106 ; 5.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;31.582 ;21.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 160 ;14.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.646 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1541 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 467 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2549 -1.6516 41.9305 REMARK 3 T TENSOR REMARK 3 T11: 0.5738 T22: 0.3196 REMARK 3 T33: 0.1365 T12: -0.0053 REMARK 3 T13: 0.0147 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 5.3062 L22: 3.3065 REMARK 3 L33: 1.3073 L12: 3.5475 REMARK 3 L13: 0.1906 L23: 0.9709 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.2660 S13: -0.6413 REMARK 3 S21: 0.0555 S22: 0.0052 S23: -0.2822 REMARK 3 S31: -0.0310 S32: -0.0116 S33: 0.0265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6523 0.6572 41.9564 REMARK 3 T TENSOR REMARK 3 T11: 0.5923 T22: 0.4016 REMARK 3 T33: 0.1602 T12: -0.0311 REMARK 3 T13: 0.0275 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 5.4700 L22: 2.8271 REMARK 3 L33: 0.2525 L12: 3.7221 REMARK 3 L13: 0.7867 L23: 0.4447 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: -0.0464 S13: 0.0926 REMARK 3 S21: 0.0787 S22: -0.0649 S23: -0.1133 REMARK 3 S31: -0.0184 S32: 0.0959 S33: -0.0033 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 471 C 522 REMARK 3 RESIDUE RANGE : C 601 C 602 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8972 8.5403 33.5797 REMARK 3 T TENSOR REMARK 3 T11: 0.6185 T22: 0.5622 REMARK 3 T33: 0.0483 T12: -0.0176 REMARK 3 T13: 0.0598 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 6.5816 L22: 7.1303 REMARK 3 L33: 7.3495 L12: 0.7845 REMARK 3 L13: 2.1365 L23: 3.9443 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: 0.6352 S13: 0.1695 REMARK 3 S21: -0.1792 S22: -0.4025 S23: -0.2161 REMARK 3 S31: -0.1606 S32: -0.6558 S33: 0.2991 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 470 D 523 REMARK 3 RESIDUE RANGE : D 601 D 602 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0054 -1.8128 32.2973 REMARK 3 T TENSOR REMARK 3 T11: 0.5988 T22: 0.2801 REMARK 3 T33: 0.1907 T12: -0.0161 REMARK 3 T13: 0.0002 T23: 0.1006 REMARK 3 L TENSOR REMARK 3 L11: 4.1301 L22: 5.9675 REMARK 3 L33: 3.1234 L12: 0.1403 REMARK 3 L13: 0.4650 L23: -0.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: 0.3910 S13: 0.7191 REMARK 3 S21: -0.1532 S22: -0.0370 S23: 0.2462 REMARK 3 S31: -0.2634 S32: -0.0798 S33: 0.1814 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 101 REMARK 3 RESIDUE RANGE : C 603 C 603 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0628 -0.4840 36.8457 REMARK 3 T TENSOR REMARK 3 T11: 0.3497 T22: 0.4019 REMARK 3 T33: 0.5805 T12: -0.0005 REMARK 3 T13: 0.0243 T23: 0.1985 REMARK 3 L TENSOR REMARK 3 L11: 16.6211 L22: 16.4970 REMARK 3 L33: 3.5789 L12: 2.6835 REMARK 3 L13: -1.7191 L23: -0.6369 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.2382 S13: 0.0747 REMARK 3 S21: 0.1399 S22: -0.0903 S23: -0.5857 REMARK 3 S31: 0.0095 S32: 0.0510 S33: 0.1097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC VARIMAX REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 61.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M ZINC CHLORIDE, 0.1M MES, 20% PEG REMARK 280 6000 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.33500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.33500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 467 REMARK 465 SER C 468 REMARK 465 SER C 469 REMARK 465 SER C 470 REMARK 465 LYS C 523 REMARK 465 GLY D 467 REMARK 465 SER D 468 REMARK 465 SER D 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 523 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG D 471 O HOH D 715 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 1 C5' - C4' - O4' ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS D 522 75.53 -120.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 12 N7 REMARK 620 2 HOH B 210 O 83.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT B 17 OP2 REMARK 620 2 HOH B 211 O 106.6 REMARK 620 3 HOH D 718 O 130.9 110.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 473 SG REMARK 620 2 CYS C 476 SG 107.1 REMARK 620 3 HIS C 489 NE2 112.7 103.3 REMARK 620 4 HIS C 493 NE2 111.4 115.7 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 501 SG REMARK 620 2 CYS C 504 SG 122.6 REMARK 620 3 HIS C 517 NE2 110.4 101.1 REMARK 620 4 HIS C 522 NE2 97.9 128.3 91.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 473 SG REMARK 620 2 CYS D 476 SG 114.5 REMARK 620 3 HIS D 489 NE2 112.7 108.7 REMARK 620 4 HIS D 493 NE2 101.4 111.8 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 501 SG REMARK 620 2 CYS D 504 SG 102.8 REMARK 620 3 HIS D 517 NE2 110.9 84.0 REMARK 620 4 HIS D 522 NE2 115.9 121.5 117.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F2J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA, P6522 CRYSTAL FORM DBREF 4IS1 C 469 523 UNP O75362 ZN217_HUMAN 469 523 DBREF 4IS1 D 469 523 UNP O75362 ZN217_HUMAN 469 523 DBREF 4IS1 A 1 20 PDB 4IS1 4IS1 1 20 DBREF 4IS1 B 1 20 PDB 4IS1 4IS1 1 20 SEQADV 4IS1 GLY C 467 UNP O75362 EXPRESSION TAG SEQADV 4IS1 SER C 468 UNP O75362 EXPRESSION TAG SEQADV 4IS1 GLY D 467 UNP O75362 EXPRESSION TAG SEQADV 4IS1 SER D 468 UNP O75362 EXPRESSION TAG SEQRES 1 A 20 DT DT DT DG DC DA DG DA DA DT DC DG DA SEQRES 2 A 20 DT DT DC DT DG DC DA SEQRES 1 B 20 DA DA DT DG DC DA DG DA DA DT DC DG DA SEQRES 2 B 20 DT DT DC DT DG DC DA SEQRES 1 C 57 GLY SER SER SER ARG GLU CYS SER TYR CYS GLY LYS PHE SEQRES 2 C 57 PHE ARG SER ASN TYR TYR LEU ASN ILE HIS LEU ARG THR SEQRES 3 C 57 HIS THR GLY GLU LYS PRO TYR LYS CYS GLU PHE CYS GLU SEQRES 4 C 57 TYR ALA ALA ALA GLN LYS THR SER LEU ARG TYR HIS LEU SEQRES 5 C 57 GLU ARG HIS HIS LYS SEQRES 1 D 57 GLY SER SER SER ARG GLU CYS SER TYR CYS GLY LYS PHE SEQRES 2 D 57 PHE ARG SER ASN TYR TYR LEU ASN ILE HIS LEU ARG THR SEQRES 3 D 57 HIS THR GLY GLU LYS PRO TYR LYS CYS GLU PHE CYS GLU SEQRES 4 D 57 TYR ALA ALA ALA GLN LYS THR SER LEU ARG TYR HIS LEU SEQRES 5 D 57 GLU ARG HIS HIS LYS HET ZN B 101 1 HET ZN B 102 1 HET ZN C 601 1 HET ZN C 602 1 HET ZN C 603 1 HET CL C 604 1 HET ZN D 601 1 HET ZN D 602 1 HET ZN D 603 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 5 ZN 8(ZN 2+) FORMUL 10 CL CL 1- FORMUL 14 HOH *57(H2 O) HELIX 1 1 SER C 482 GLY C 495 1 14 HELIX 2 2 GLN C 510 HIS C 522 1 13 HELIX 3 3 SER D 482 GLY D 495 1 14 HELIX 4 4 GLN D 510 HIS D 522 1 13 SHEET 1 A 2 TYR C 499 LYS C 500 0 SHEET 2 A 2 ALA C 507 ALA C 508 -1 O ALA C 508 N TYR C 499 SHEET 1 B 2 TYR D 499 LYS D 500 0 SHEET 2 B 2 ALA D 507 ALA D 508 -1 O ALA D 508 N TYR D 499 LINK N7 DG B 12 ZN ZN B 101 1555 1555 2.45 LINK OP2 DT B 17 ZN ZN B 102 1555 1555 2.02 LINK ZN ZN B 101 O HOH B 210 1555 1555 2.01 LINK ZN ZN B 102 O HOH B 211 1555 1555 2.36 LINK ZN ZN B 102 O HOH D 718 1555 1555 2.26 LINK SG CYS C 473 ZN ZN C 602 1555 1555 2.40 LINK SG CYS C 476 ZN ZN C 602 1555 1555 2.32 LINK NE2 HIS C 489 ZN ZN C 602 1555 1555 2.04 LINK NE2 HIS C 493 ZN ZN C 602 1555 1555 2.21 LINK SG CYS C 501 ZN ZN C 601 1555 1555 2.27 LINK SG CYS C 504 ZN ZN C 601 1555 1555 1.94 LINK NE2 HIS C 517 ZN ZN C 601 1555 1555 2.03 LINK NE2 HIS C 521 ZN ZN C 603 1555 1555 2.28 LINK NE2 HIS C 522 ZN ZN C 601 1555 1555 2.39 LINK SG CYS D 473 ZN ZN D 602 1555 1555 2.23 LINK SG CYS D 476 ZN ZN D 602 1555 1555 2.18 LINK NE2 HIS D 489 ZN ZN D 602 1555 1555 2.10 LINK NE2 HIS D 493 ZN ZN D 602 1555 1555 2.07 LINK SG CYS D 501 ZN ZN D 601 1555 1555 2.12 LINK SG CYS D 504 ZN ZN D 601 1555 1555 2.27 LINK NE2 HIS D 517 ZN ZN D 601 1555 1555 2.49 LINK NE2 HIS D 522 ZN ZN D 601 1555 1555 1.99 SITE 1 AC1 2 DG B 12 HOH B 210 SITE 1 AC2 4 DT B 17 HOH B 211 HOH D 714 HOH D 718 SITE 1 AC3 4 CYS C 501 CYS C 504 HIS C 517 HIS C 522 SITE 1 AC4 4 CYS C 473 CYS C 476 HIS C 489 HIS C 493 SITE 1 AC5 1 HIS C 521 SITE 1 AC6 4 CYS D 501 CYS D 504 HIS D 517 HIS D 522 SITE 1 AC7 4 CYS D 473 CYS D 476 HIS D 489 HIS D 493 SITE 1 AC8 4 GLU C 502 GLU D 472 GLY D 477 HIS D 521 CRYST1 124.670 40.980 52.040 90.00 97.21 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008021 0.000000 0.001015 0.00000 SCALE2 0.000000 0.024402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019369 0.00000