PDB Short entry for 4IVZ HEADER TRANSCRIPTION/DNA 23-JAN-13 4IVZ TITLE A Y37F MUTANT OF C.ESP1396I BOUND TO ITS HIGHEST AFFINITY OPERATOR TITLE 2 SITE OM COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3'); COMPND 9 CHAIN: C, G; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: 19 BASE OM OPERATOR; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3'); COMPND 15 CHAIN: D, H; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: 19 BASE OM OPERATOR COMPLEMENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER SP.; SOURCE 3 ORGANISM_TAXID: 211595; SOURCE 4 STRAIN: RFL1396; SOURCE 5 GENE: ESP1396IC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS RESTRICTION-MODIFICATION, HELIX-TURN-HELIX, TRANSCRIPTIONAL KEYWDS 2 REGULATOR, DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.N.A.MARTIN,J.E.MCGEEHAN,G.G.KNEALE REVDAT 3 20-SEP-23 4IVZ 1 SEQADV REVDAT 2 18-JUN-14 4IVZ 1 JRNL REVDAT 1 29-JAN-14 4IVZ 0 JRNL AUTH R.N.MARTIN,J.E.MCGEEHAN,G.KNEALE JRNL TITL STRUCTURAL AND MUTAGENIC ANALYSIS OF THE RM CONTROLLER JRNL TITL 2 PROTEIN C.ESP1396I. JRNL REF PLOS ONE V. 9 98365 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24887147 JRNL DOI 10.1371/JOURNAL.PONE.0098365 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.BOGDANOVA,M.ZAKHAROVA,S.STREETER,J.TAYLOR,T.HEYDUK, REMARK 1 AUTH 2 G.KNEALE,K.SEVERINOV REMARK 1 TITL TRANSCRIPTION REGULATION OF RESTRICTION-MODIFICATION SYSTEM REMARK 1 TITL 2 ESP1396I. REMARK 1 REF NUCLEIC ACIDS RES. V. 37 3354 2009 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 19336410 REMARK 1 DOI 10.1093/NAR/GKP210 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.E.MCGEEHAN,N.J.BALL,S.D.STREETER,S.J.THRESH,G.G.KNEALE REMARK 1 TITL RECOGNITION OF DUAL SYMMETRY BY THE CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I BASED ON THE STRUCTURE OF THE TRANSCRIPTIONAL REMARK 1 TITL 3 ACTIVATION COMPLEX. REMARK 1 REF NUCLEIC ACIDS RES. V. 40 4158 2012 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 22210861 REMARK 1 DOI 10.1093/NAR/GKR1250 REMARK 1 REFERENCE 3 REMARK 1 AUTH N.BALL,S.D.STREETER,G.G.KNEALE,J.E.MCGEEHAN REMARK 1 TITL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 900 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19690367 REMARK 1 DOI 10.1107/S0907444909020514 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.E.MCGEEHAN,S.D.STREETER,S.J.THRESH,N.BALL,R.B.RAVELLI, REMARK 1 AUTH 2 G.G.KNEALE REMARK 1 TITL STRUCTURAL ANALYSIS OF THE GENETIC SWITCH THAT REGULATES THE REMARK 1 TITL 2 EXPRESSION OF RESTRICTION-MODIFICATION GENES. REMARK 1 REF NUCLEIC ACIDS RES. V. 36 4778 2008 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 18644840 REMARK 1 DOI 10.1093/NAR/GKN448 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 11333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 753 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.1510 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.1820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2482 REMARK 3 NUCLEIC ACID ATOMS : 1546 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.245 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.726 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4235 ; 0.011 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5997 ; 1.708 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 7.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;35.066 ;24.356 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;22.384 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2500 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11810 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 146.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 3UFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG BUFFER, 25 % W/V PEG 1500, REMARK 280 10 UM SPERMIDINE , PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 78 REMARK 465 ASP A 79 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 HIS B 78 REMARK 465 ASP B 79 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 ASP E 79 REMARK 465 GLY F -2 REMARK 465 SER F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 HIS F 78 REMARK 465 ASP F 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG F 17 O LYS F 20 1.78 REMARK 500 NH2 ARG F 46 N7 DG G 13 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 15 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT D 2 C1' - O4' - C4' ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 -5.65 -55.31 REMARK 500 ASP A 64 14.35 -60.04 REMARK 500 PHE A 67 -72.80 -45.07 REMARK 500 ASN B 32 53.59 30.87 REMARK 500 ASN B 44 39.63 -140.15 REMARK 500 SER B 45 51.94 38.58 REMARK 500 LEU B 53 -70.00 -43.00 REMARK 500 PHE E 4 -76.10 -50.60 REMARK 500 LYS E 8 4.51 -66.83 REMARK 500 ASN E 32 -5.20 81.05 REMARK 500 ARG E 43 -76.28 -77.56 REMARK 500 SER E 45 33.99 73.33 REMARK 500 ARG E 46 154.04 -43.90 REMARK 500 LEU E 48 -174.73 -69.42 REMARK 500 LEU E 76 73.02 -61.98 REMARK 500 LYS F 20 74.87 77.40 REMARK 500 ARG F 46 147.09 -36.20 REMARK 500 LYS F 51 -9.52 -57.74 REMARK 500 ASP F 64 -20.62 -39.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FN3 RELATED DB: PDB REMARK 900 S52A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4FBI RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4F8D RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3G5G RELATED DB: PDB REMARK 900 NATIVE FREE PROTEIN REMARK 900 RELATED ID: 3FYA RELATED DB: PDB REMARK 900 R35A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3CLC RELATED DB: PDB REMARK 900 NATIVE DNA BOUND TETRAMER REMARK 900 RELATED ID: 3S8Q RELATED DB: PDB REMARK 900 NATIVE DNA BOUND DIMER (OL) REMARK 900 RELATED ID: 3UFD RELATED DB: PDB REMARK 900 NATIVE DNA BOUND DIMER (OM) REMARK 900 RELATED ID: 4I6R RELATED DB: PDB REMARK 900 NATIVE FREE PROTEIN (HIGH RESOLUTION) REMARK 900 RELATED ID: 4I6T RELATED DB: PDB REMARK 900 T36A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4I6U RELATED DB: PDB REMARK 900 Y37F MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4I8T RELATED DB: PDB REMARK 900 NATIVE DNA BOUND DIMER (OR) REMARK 900 RELATED ID: 4IA8 RELATED DB: PDB REMARK 900 Y37A MUTANT FREE PROTEIN DBREF 4IVZ A 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IVZ B 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IVZ E 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IVZ F 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IVZ C 1 19 PDB 4IVZ 4IVZ 1 19 DBREF 4IVZ G 1 19 PDB 4IVZ 4IVZ 1 19 DBREF 4IVZ D 1 19 PDB 4IVZ 4IVZ 1 19 DBREF 4IVZ H 1 19 PDB 4IVZ 4IVZ 1 19 SEQADV 4IVZ GLY A -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ SER A -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ HIS A 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ PHE A 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4IVZ GLY B -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ SER B -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ HIS B 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ PHE B 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4IVZ GLY E -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ SER E -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ HIS E 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ PHE E 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4IVZ GLY F -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ SER F -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ HIS F 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IVZ PHE F 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQRES 1 A 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 A 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 A 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 A 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 A 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 A 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 A 82 LEU LYS HIS ASP SEQRES 1 B 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 B 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 B 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 B 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 B 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 B 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 B 82 LEU LYS HIS ASP SEQRES 1 C 19 DA DT DG DT DA DG DA DC DT DA DT DA DG SEQRES 2 C 19 DT DC DG DA DC DA SEQRES 1 D 19 DT DT DG DT DC DG DA DC DT DA DT DA DG SEQRES 2 D 19 DT DC DT DA DC DA SEQRES 1 E 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 E 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 E 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 E 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 E 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 E 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 E 82 LEU LYS HIS ASP SEQRES 1 F 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 F 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 F 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 F 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 F 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 F 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 F 82 LEU LYS HIS ASP SEQRES 1 G 19 DA DT DG DT DA DG DA DC DT DA DT DA DG SEQRES 2 G 19 DT DC DG DA DC DA SEQRES 1 H 19 DT DT DG DT DC DG DA DC DT DA DT DA DG SEQRES 2 H 19 DT DC DT DA DC DA FORMUL 9 HOH *2(H2 O) HELIX 1 1 SER A 3 LYS A 20 1 18 HELIX 2 2 THR A 23 ASN A 32 1 10 HELIX 3 3 ASP A 34 SER A 45 1 12 HELIX 4 4 THR A 49 LEU A 60 1 12 HELIX 5 5 VAL A 65 LEU A 76 1 12 HELIX 6 6 SER B 3 LYS B 20 1 18 HELIX 7 7 THR B 23 SER B 31 1 9 HELIX 8 8 ASP B 34 SER B 45 1 12 HELIX 9 9 THR B 49 LEU B 60 1 12 HELIX 10 10 SER B 63 LEU B 76 1 14 HELIX 11 11 SER E 3 GLU E 19 1 17 HELIX 12 12 THR E 23 ASN E 32 1 10 HELIX 13 13 ASP E 34 SER E 45 1 12 HELIX 14 14 THR E 49 LEU E 60 1 12 HELIX 15 15 SER E 63 LEU E 76 1 14 HELIX 16 16 SER F 3 LYS F 20 1 18 HELIX 17 17 THR F 23 ASN F 32 1 10 HELIX 18 18 ASP F 34 SER F 45 1 12 HELIX 19 19 THR F 49 GLU F 61 1 13 HELIX 20 20 SER F 63 LEU F 76 1 14 CISPEP 1 GLU F 19 LYS F 20 0 11.81 CRYST1 47.540 146.700 47.790 90.00 93.21 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021035 0.000000 0.001180 0.00000 SCALE2 0.000000 0.006817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020958 0.00000