PDB Short entry for 4IWR HEADER TRANSCRIPTION/DNA 24-JAN-13 4IWR TITLE C.ESP1396I BOUND TO A 25 BASE PAIR OPERATOR SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (25-MER); COMPND 7 CHAIN: C, G; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: 25 BASE PAIR OPERATOR (OL); COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (25-MER); COMPND 12 CHAIN: D, H; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: 25 BASE PAIR OPERATOR (OL) (COMPLIMENTARY STRAND) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER SP.; SOURCE 3 ORGANISM_TAXID: 211595; SOURCE 4 STRAIN: RFL1396; SOURCE 5 GENE: ESP1396IC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS RESTRICTION-MODIFICATION, HELIX-TURN-HELIX, TRANSCRIPTIONAL KEYWDS 2 REGULATION, DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.N.A.MARTIN,J.E.MCGEEHAN,N.J.BALL,S.D.STREETER,S.-J.THRESH, AUTHOR 2 G.G.KNEALE REVDAT 2 20-SEP-23 4IWR 1 SEQADV REVDAT 1 11-SEP-13 4IWR 0 JRNL AUTH R.N.MARTIN,J.E.MCGEEHAN,N.J.BALL,S.D.STREETER,S.J.THRESH, JRNL AUTH 2 G.G.KNEALE JRNL TITL STRUCTURAL ANALYSIS OF DNA-PROTEIN COMPLEXES REGULATING THE JRNL TITL 2 RESTRICTION-MODIFICATION SYSTEM ESP1396I. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 962 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23989141 JRNL DOI 10.1107/S174430911302126X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.E.MCGEEHAN,N.J.BALL,S.D.STREETER,S.J.THRESH,G.G.KNEALE REMARK 1 TITL RECOGNITION OF DUAL SYMMETRY BY THE CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I BASED ON THE STRUCTURE OF THE TRANSCRIPTIONAL REMARK 1 TITL 3 ACTIVATION COMPLEX. REMARK 1 REF NUCLEIC ACIDS RES. V. 40 4158 2012 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 22210861 REMARK 1 DOI 10.1093/NAR/GKR1250 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.J.BALL,J.E.MCGEEHAN,S.D.STREETER,S.J.THRESH,G.G.KNEALE REMARK 1 TITL THE STRUCTURAL BASIS OF DIFFERENTIAL DNA SEQUENCE REMARK 1 TITL 2 RECOGNITION BY RESTRICTION-MODIFICATION CONTROLLER PROTEINS. REMARK 1 REF NUCLEIC ACIDS RES. V. 40 10532 2012 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 22941636 REMARK 1 DOI 10.1093/NAR/GKS718 REMARK 1 REFERENCE 3 REMARK 1 AUTH N.BALL,S.D.STREETER,G.G.KNEALE,J.E.MCGEEHAN REMARK 1 TITL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 900 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19690367 REMARK 1 DOI 10.1107/S0907444909020514 REMARK 1 REFERENCE 4 REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 21041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2458 REMARK 3 NUCLEIC ACID ATOMS : 2050 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.770 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.274 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.222 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4780 ; 0.011 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 3727 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6846 ; 1.522 ; 1.583 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8686 ; 1.168 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 5.816 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;36.805 ;24.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;18.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.325 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3813 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 981 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 25 REMARK 3 ORIGIN FOR THE GROUP (A): 64.4910 4.9440 -16.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.1124 REMARK 3 T33: 0.4980 T12: -0.0957 REMARK 3 T13: -0.0536 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 4.9688 L22: 1.7584 REMARK 3 L33: 4.6303 L12: 0.8298 REMARK 3 L13: 2.4667 L23: 0.0350 REMARK 3 S TENSOR REMARK 3 S11: -0.3263 S12: -0.0440 S13: -0.1648 REMARK 3 S21: 0.2482 S22: 0.0059 S23: -0.3237 REMARK 3 S31: -0.3841 S32: 0.4327 S33: 0.3203 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 25 REMARK 3 ORIGIN FOR THE GROUP (A): 64.0460 6.3440 -16.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.2133 T22: 0.1193 REMARK 3 T33: 0.4832 T12: -0.0863 REMARK 3 T13: -0.0395 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 2.7108 L22: 1.9125 REMARK 3 L33: 3.8443 L12: -0.6685 REMARK 3 L13: 1.8274 L23: -1.0387 REMARK 3 S TENSOR REMARK 3 S11: -0.5692 S12: -0.0696 S13: 0.1511 REMARK 3 S21: 0.1419 S22: -0.0032 S23: -0.2387 REMARK 3 S31: -0.6086 S32: 0.3252 S33: 0.5725 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0840 -9.0990 -25.3500 REMARK 3 T TENSOR REMARK 3 T11: 0.3295 T22: 0.2325 REMARK 3 T33: 0.6780 T12: -0.2686 REMARK 3 T13: 0.0409 T23: -0.0646 REMARK 3 L TENSOR REMARK 3 L11: 5.8460 L22: 3.4961 REMARK 3 L33: 2.8502 L12: 0.4521 REMARK 3 L13: 2.3424 L23: -1.5255 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: 0.0464 S13: -0.6496 REMARK 3 S21: -0.2915 S22: 0.1083 S23: 0.0922 REMARK 3 S31: 0.5957 S32: -0.4923 S33: -0.0424 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 64.9980 -10.0750 -15.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.2553 T22: 0.1168 REMARK 3 T33: 0.7334 T12: 0.0971 REMARK 3 T13: 0.0914 T23: 0.1220 REMARK 3 L TENSOR REMARK 3 L11: 5.9695 L22: 3.5112 REMARK 3 L33: 3.3226 L12: 1.8885 REMARK 3 L13: 0.5696 L23: -0.2650 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: -0.2757 S13: -1.0138 REMARK 3 S21: 0.2155 S22: -0.2140 S23: -0.0711 REMARK 3 S31: 0.6185 S32: 0.5502 S33: 0.3019 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 25 REMARK 3 ORIGIN FOR THE GROUP (A): 68.0570 2.8950 15.1740 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.1360 REMARK 3 T33: 0.5370 T12: -0.0805 REMARK 3 T13: -0.0503 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.4481 L22: 5.4810 REMARK 3 L33: 5.6791 L12: -1.5377 REMARK 3 L13: 1.3694 L23: -2.2979 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: 0.4829 S13: 0.2351 REMARK 3 S21: 0.0531 S22: -0.2889 S23: 0.2900 REMARK 3 S31: -0.7324 S32: 0.1848 S33: 0.3906 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 25 REMARK 3 ORIGIN FOR THE GROUP (A): 69.5300 3.1970 15.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1401 REMARK 3 T33: 0.5030 T12: -0.0919 REMARK 3 T13: -0.0515 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.1721 L22: 2.3293 REMARK 3 L33: 5.6882 L12: -1.0798 REMARK 3 L13: 2.1648 L23: -1.4724 REMARK 3 S TENSOR REMARK 3 S11: -0.1729 S12: 0.3194 S13: 0.3780 REMARK 3 S21: 0.1411 S22: -0.4873 S23: -0.0697 REMARK 3 S31: -0.7291 S32: 0.3077 S33: 0.6602 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 76 REMARK 3 ORIGIN FOR THE GROUP (A): 64.5910 -19.2140 24.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.4730 T22: 0.1003 REMARK 3 T33: 0.6520 T12: -0.2161 REMARK 3 T13: 0.0548 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.2259 L22: 3.5806 REMARK 3 L33: 4.8165 L12: -1.0345 REMARK 3 L13: 1.8862 L23: -2.0407 REMARK 3 S TENSOR REMARK 3 S11: 0.1848 S12: -0.1133 S13: -0.4552 REMARK 3 S21: 0.1261 S22: -0.1003 S23: 0.4384 REMARK 3 S31: 1.1397 S32: -0.5073 S33: -0.0846 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 77 REMARK 3 ORIGIN FOR THE GROUP (A): 54.8150 -4.1650 14.2590 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.2889 REMARK 3 T33: 0.7201 T12: -0.0143 REMARK 3 T13: -0.0496 T23: -0.1085 REMARK 3 L TENSOR REMARK 3 L11: 2.1743 L22: 8.9199 REMARK 3 L33: 6.9822 L12: -0.6074 REMARK 3 L13: 0.6052 L23: 0.8733 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.1597 S13: -0.3148 REMARK 3 S21: -0.2566 S22: -0.1789 S23: 1.0043 REMARK 3 S31: -0.1311 S32: -1.2383 S33: 0.3191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21045 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.863 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 3S8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCB BUFFER, 20 % V/V PEG 1500, REMARK 280 10 MM SPERMIDINE , PH 4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.78333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 77 REMARK 465 HIS A 78 REMARK 465 ASP A 79 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 HIS B 78 REMARK 465 ASP B 79 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 LYS E 77 REMARK 465 HIS E 78 REMARK 465 ASP E 79 REMARK 465 GLY F -2 REMARK 465 SER F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 HIS F 78 REMARK 465 ASP F 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA G 12 O3' DG G 13 P -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 48 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 DA C 1 O5' - P - OP2 ANGL. DEV. = 7.3 DEGREES REMARK 500 DA D 18 C4' - C3' - O3' ANGL. DEV. = 13.7 DEGREES REMARK 500 DG D 19 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DT G 11 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG H 19 O5' - P - OP2 ANGL. DEV. = -9.0 DEGREES REMARK 500 DG H 19 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 45 -51.74 66.62 REMARK 500 ARG B 46 130.58 49.45 REMARK 500 GLU B 61 61.62 67.05 REMARK 500 LEU B 76 57.42 -64.47 REMARK 500 ASN F 32 53.31 39.11 REMARK 500 SER F 45 -37.70 55.13 REMARK 500 ARG F 46 127.35 42.31 REMARK 500 GLU F 61 63.19 75.69 REMARK 500 LEU F 76 42.42 -82.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FN3 RELATED DB: PDB REMARK 900 S52A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4FBI RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4F8D RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3G5G RELATED DB: PDB REMARK 900 NATIVE FREE PROTEIN REMARK 900 RELATED ID: 3FYA RELATED DB: PDB REMARK 900 R35A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3CLC RELATED DB: PDB REMARK 900 NATIVE DNA BOUND TETRAMER REMARK 900 RELATED ID: 3S8Q RELATED DB: PDB REMARK 900 NATIVE DNA BOUND DIMER (OL) REMARK 900 RELATED ID: 3UFD RELATED DB: PDB REMARK 900 NATIVE DNA BOUND DIMER (OM) REMARK 900 RELATED ID: 4I6R RELATED DB: PDB REMARK 900 NATIVE FREE PROTEIN (HIGH RESOLUTION) REMARK 900 RELATED ID: 4I6T RELATED DB: PDB REMARK 900 T36A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4I6U RELATED DB: PDB REMARK 900 Y37F MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4I8T RELATED DB: PDB REMARK 900 NATIVE DNA BOUND DIMER (OR) REMARK 900 RELATED ID: 4IA8 RELATED DB: PDB REMARK 900 Y37A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4IVZ RELATED DB: PDB REMARK 900 Y37F DNA BOUND DIMER (OM) DBREF 4IWR A 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IWR B 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IWR E 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IWR F 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4IWR C 1 25 PDB 4IWR 4IWR 1 25 DBREF 4IWR G 1 25 PDB 4IWR 4IWR 1 25 DBREF 4IWR D 1 25 PDB 4IWR 4IWR 1 25 DBREF 4IWR H 1 25 PDB 4IWR 4IWR 1 25 SEQADV 4IWR GLY A -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR SER A -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR HIS A 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR GLY B -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR SER B -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR HIS B 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR GLY E -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR SER E -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR HIS E 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR GLY F -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR SER F -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4IWR HIS F 0 UNP Q8GGH0 EXPRESSION TAG SEQRES 1 A 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 A 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 A 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 A 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 A 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 A 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 A 82 LEU LYS HIS ASP SEQRES 1 B 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 B 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 B 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 B 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 B 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 B 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 B 82 LEU LYS HIS ASP SEQRES 1 C 25 DA DT DG DT DG DA DC DT DT DA DT DA DG SEQRES 2 C 25 DT DC DC DG DT DG DT DG DA DT DT DA SEQRES 1 D 25 DT DA DA DT DC DA DC DA DC DG DG DA DC SEQRES 2 D 25 DT DA DT DA DA DG DT DC DA DC DA DT SEQRES 1 E 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 E 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 E 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 E 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 E 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 E 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 E 82 LEU LYS HIS ASP SEQRES 1 F 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 F 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 F 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 F 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 F 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 F 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 F 82 LEU LYS HIS ASP SEQRES 1 G 25 DA DT DG DT DG DA DC DT DT DA DT DA DG SEQRES 2 G 25 DT DC DC DG DT DG DT DG DA DT DT DA SEQRES 1 H 25 DT DA DA DT DC DA DC DA DC DG DG DA DC SEQRES 2 H 25 DT DA DT DA DA DG DT DC DA DC DA DT FORMUL 9 HOH *23(H2 O) HELIX 1 1 SER A 3 LYS A 20 1 18 HELIX 2 2 THR A 23 ASN A 32 1 10 HELIX 3 3 ASP A 34 ARG A 43 1 10 HELIX 4 4 THR A 49 LEU A 60 1 12 HELIX 5 5 SER A 63 ILE A 75 1 13 HELIX 6 6 SER B 3 LYS B 20 1 18 HELIX 7 7 THR B 23 ASN B 32 1 10 HELIX 8 8 ASP B 34 SER B 45 1 12 HELIX 9 9 THR B 49 GLU B 61 1 13 HELIX 10 10 SER B 63 LEU B 76 1 14 HELIX 11 11 SER E 3 LYS E 20 1 18 HELIX 12 12 THR E 23 ASN E 32 1 10 HELIX 13 13 ASP E 34 ARG E 43 1 10 HELIX 14 14 THR E 49 LEU E 60 1 12 HELIX 15 15 SER E 63 ILE E 75 1 13 HELIX 16 16 SER F 3 LYS F 20 1 18 HELIX 17 17 THR F 23 SER F 31 1 9 HELIX 18 18 ASP F 34 SER F 45 1 12 HELIX 19 19 THR F 49 GLU F 61 1 13 HELIX 20 20 SER F 63 LEU F 76 1 14 CRYST1 48.020 48.020 218.350 90.00 90.00 120.00 P 32 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020825 0.012023 0.000000 0.00000 SCALE2 0.000000 0.024046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004580 0.00000