PDB Short entry for 4J0K HEADER HYDROLASE 31-JAN-13 4J0K TITLE TANNIN ACYL HYDROLASE IN COMPLEX WITH ETHYL GALLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANNASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590; SOURCE 4 GENE: TANLPL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TANNIN, HYDROLASE, HYDROLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR B.REN,M.WU,Q.WANG,X.PENG,H.WEN,Q.CHEN,W.J.MCKINSTRY REVDAT 2 24-AUG-22 4J0K 1 JRNL REMARK SEQADV REVDAT 1 22-MAY-13 4J0K 0 JRNL AUTH B.REN,M.WU,Q.WANG,X.PENG,H.WEN,W.J.MCKINSTRY,Q.CHEN JRNL TITL CRYSTAL STRUCTURE OF TANNASE FROM LACTOBACILLUS PLANTARUM. JRNL REF J.MOL.BIOL. V. 425 2737 2013 JRNL REFN ESSN 1089-8638 JRNL PMID 23648840 JRNL DOI 10.1016/J.JMB.2013.04.032 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 52453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8933 - 5.4348 0.98 2634 143 0.2006 0.2342 REMARK 3 2 5.4348 - 4.3284 0.97 2612 143 0.1685 0.1606 REMARK 3 3 4.3284 - 3.7855 0.97 2608 132 0.1599 0.1677 REMARK 3 4 3.7855 - 3.4413 0.97 2627 139 0.1626 0.2030 REMARK 3 5 3.4413 - 3.1958 0.98 2649 138 0.1687 0.2568 REMARK 3 6 3.1958 - 3.0080 0.98 2640 131 0.1843 0.2304 REMARK 3 7 3.0080 - 2.8578 0.98 2643 129 0.1798 0.2276 REMARK 3 8 2.8578 - 2.7338 0.98 2638 141 0.1826 0.2450 REMARK 3 9 2.7338 - 2.6288 0.98 2665 151 0.1803 0.2394 REMARK 3 10 2.6288 - 2.5382 0.98 2612 149 0.1903 0.2566 REMARK 3 11 2.5382 - 2.4590 0.98 2639 147 0.2019 0.2284 REMARK 3 12 2.4590 - 2.3888 0.97 2640 123 0.2040 0.2937 REMARK 3 13 2.3888 - 2.3261 0.97 2620 134 0.2219 0.3019 REMARK 3 14 2.3261 - 2.2694 0.97 2570 155 0.2315 0.2948 REMARK 3 15 2.2694 - 2.2179 0.96 2610 143 0.2421 0.3059 REMARK 3 16 2.2179 - 2.1707 0.97 2601 150 0.2522 0.2752 REMARK 3 17 2.1707 - 2.1273 0.96 2600 133 0.2670 0.3126 REMARK 3 18 2.1273 - 2.0872 0.96 2541 149 0.2917 0.3698 REMARK 3 19 2.0872 - 2.0500 0.95 2641 133 0.3005 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 47.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.86580 REMARK 3 B22 (A**2) : -11.50130 REMARK 3 B33 (A**2) : -0.36450 REMARK 3 B12 (A**2) : -5.20870 REMARK 3 B13 (A**2) : 8.91240 REMARK 3 B23 (A**2) : -5.00290 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7353 REMARK 3 ANGLE : 0.934 10036 REMARK 3 CHIRALITY : 0.065 1124 REMARK 3 PLANARITY : 0.004 1313 REMARK 3 DIHEDRAL : 15.552 2626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:228) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6857 105.1422 80.3327 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.1501 REMARK 3 T33: 0.1729 T12: -0.0176 REMARK 3 T13: 0.0215 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.2837 L22: 0.7214 REMARK 3 L33: 0.5184 L12: -0.0089 REMARK 3 L13: -0.0640 L23: 0.2930 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: -0.0288 S13: 0.0791 REMARK 3 S21: 0.1519 S22: -0.0203 S23: -0.0668 REMARK 3 S31: -0.0823 S32: -0.0108 S33: -0.0432 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 243:340) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8927 75.1466 70.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.1368 REMARK 3 T33: 0.1431 T12: -0.0049 REMARK 3 T13: 0.0421 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4728 L22: 0.4182 REMARK 3 L33: 1.5031 L12: 0.3769 REMARK 3 L13: -0.3449 L23: -0.1669 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0066 S13: -0.0414 REMARK 3 S21: -0.0281 S22: -0.0390 S23: 0.0050 REMARK 3 S31: -0.0112 S32: 0.0022 S33: 0.0570 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 341:469) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4166 91.1528 70.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.2840 T22: 0.1355 REMARK 3 T33: 0.1458 T12: -0.0161 REMARK 3 T13: 0.0115 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.3187 L22: 0.4013 REMARK 3 L33: 1.0222 L12: 0.0045 REMARK 3 L13: -0.0960 L23: -0.2797 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.0505 S13: 0.0233 REMARK 3 S21: -0.0166 S22: 0.0251 S23: -0.0717 REMARK 3 S31: 0.0335 S32: -0.0133 S33: -0.0383 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:209) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7159 42.0041 33.4135 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.1911 REMARK 3 T33: 0.1931 T12: 0.0244 REMARK 3 T13: -0.0166 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.2813 L22: 0.4960 REMARK 3 L33: 0.1794 L12: 0.0947 REMARK 3 L13: -0.2218 L23: -0.0877 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: 0.0150 S13: -0.1021 REMARK 3 S21: -0.1208 S22: -0.0080 S23: -0.1193 REMARK 3 S31: 0.0544 S32: -0.0216 S33: -0.0027 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 210:311) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6465 71.4168 40.0091 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.1741 REMARK 3 T33: 0.2070 T12: -0.0390 REMARK 3 T13: 0.0400 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 0.9748 L22: 0.6208 REMARK 3 L33: 0.6196 L12: -0.0766 REMARK 3 L13: -0.2950 L23: -0.2007 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.0811 S13: -0.0287 REMARK 3 S21: -0.1741 S22: 0.0194 S23: 0.0376 REMARK 3 S31: 0.0002 S32: -0.0265 S33: -0.0555 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 312:469) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1107 63.6820 40.0282 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.1823 REMARK 3 T33: 0.1882 T12: 0.0064 REMARK 3 T13: 0.0021 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4743 L22: 0.4431 REMARK 3 L33: 0.3452 L12: 0.0372 REMARK 3 L13: -0.2231 L23: 0.1654 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.0061 S13: 0.0714 REMARK 3 S21: -0.1494 S22: 0.0418 S23: -0.1022 REMARK 3 S31: -0.1028 S32: 0.0126 S33: -0.0508 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE PH 5.5, 20% REMARK 280 PEG 3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 229 REMARK 465 GLN A 230 REMARK 465 PRO A 231 REMARK 465 VAL A 232 REMARK 465 ALA A 233 REMARK 465 GLY A 234 REMARK 465 THR A 235 REMARK 465 THR A 236 REMARK 465 LYS A 237 REMARK 465 ASN A 238 REMARK 465 GLY A 239 REMARK 465 ARG A 240 REMARK 465 PRO A 241 REMARK 465 LYS A 242 REMARK 465 THR A 402 REMARK 465 THR A 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 1 O HOH A 799 1.85 REMARK 500 OE1 GLN B 384 O HOH B 844 1.88 REMARK 500 O HOH A 813 O HOH A 835 1.91 REMARK 500 O HOH A 792 O HOH A 816 1.93 REMARK 500 O GLY B 362 O HOH B 710 1.94 REMARK 500 NZ LYS A 121 O HOH A 855 1.96 REMARK 500 O HOH A 758 O HOH A 802 2.00 REMARK 500 O HOH A 813 O HOH A 814 2.00 REMARK 500 O HOH A 714 O HOH A 746 2.01 REMARK 500 O HOH B 757 O HOH B 758 2.01 REMARK 500 O HOH A 827 O HOH A 828 2.03 REMARK 500 O HOH A 829 O HOH A 830 2.08 REMARK 500 NH2 ARG A 378 O HOH A 694 2.08 REMARK 500 O GLY B 458 OG SER B 462 2.09 REMARK 500 O HOH A 693 O HOH A 702 2.09 REMARK 500 O LEU B 150 O HOH B 717 2.11 REMARK 500 NZ LYS B 237 O HOH B 843 2.12 REMARK 500 O HOH A 709 O HOH A 817 2.13 REMARK 500 O HOH B 826 O HOH B 827 2.13 REMARK 500 O HOH B 673 O HOH B 680 2.14 REMARK 500 N SER B 277 O HOH B 811 2.14 REMARK 500 O HOH A 672 O HOH A 709 2.15 REMARK 500 O HOH A 614 O HOH A 719 2.15 REMARK 500 N ALA B 9 O HOH B 741 2.16 REMARK 500 O HOH A 746 O HOH A 847 2.16 REMARK 500 O HOH A 693 O HOH B 863 2.16 REMARK 500 OD2 ASP B 442 O HOH B 860 2.17 REMARK 500 OE1 GLN B 469 O HOH B 782 2.17 REMARK 500 NH1 ARG A 4 O HOH A 799 2.17 REMARK 500 O HOH A 644 O HOH A 833 2.17 REMARK 500 OE1 GLN A 147 O HOH A 812 2.18 REMARK 500 NZ LYS A 144 O HOH A 761 2.18 REMARK 500 NE2 GLN B 298 O HOH B 700 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 PEG B 503 O1 PEG B 504 1655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 71 79.64 -116.02 REMARK 500 ASP A 85 129.33 -171.11 REMARK 500 SER A 163 -123.09 61.34 REMARK 500 SER A 163 -122.10 62.74 REMARK 500 CYS A 204 61.24 32.01 REMARK 500 THR A 340 145.51 79.78 REMARK 500 THR A 340 143.84 82.38 REMARK 500 ALA A 344 -158.71 -77.19 REMARK 500 ASP A 349 77.48 -100.38 REMARK 500 PHE A 371 21.29 -143.63 REMARK 500 ASN B 3 104.70 -55.28 REMARK 500 PRO B 130 38.79 -96.10 REMARK 500 SER B 163 -123.71 67.67 REMARK 500 SER B 163 -122.11 65.21 REMARK 500 CYS B 204 53.82 32.20 REMARK 500 CYS B 204 54.38 31.62 REMARK 500 ARG B 228 -156.31 -144.20 REMARK 500 HIS B 315 0.63 -52.89 REMARK 500 THR B 340 155.32 71.94 REMARK 500 ALA B 344 -168.33 -79.17 REMARK 500 PHE B 348 -51.13 -120.35 REMARK 500 SER B 452 -179.76 -171.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EGR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EGR B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J0C RELATED DB: PDB REMARK 900 RELATED ID: 4J0D RELATED DB: PDB REMARK 900 RELATED ID: 4J0G RELATED DB: PDB REMARK 900 RELATED ID: 4J0H RELATED DB: PDB REMARK 900 RELATED ID: 4J0I RELATED DB: PDB REMARK 900 RELATED ID: 4J0J RELATED DB: PDB REMARK 900 RELATED ID: 4JUI RELATED DB: PDB DBREF 4J0K A 1 469 UNP B3Y018 B3Y018_LACPN 1 469 DBREF 4J0K B 1 469 UNP B3Y018 B3Y018_LACPN 1 469 SEQADV 4J0K SER A 0 UNP B3Y018 EXPRESSION TAG SEQADV 4J0K SER B 0 UNP B3Y018 EXPRESSION TAG SEQRES 1 A 470 SER MET SER ASN ARG LEU ILE PHE ASP ALA ASP TRP LEU SEQRES 2 A 470 VAL PRO GLU GLN VAL GLN VAL ALA GLY GLN ALA ILE GLN SEQRES 3 A 470 TYR TYR ALA ALA ARG ASN ILE GLN TYR VAL GLN HIS PRO SEQRES 4 A 470 VAL ALA ALA ILE GLN VAL LEU ASN VAL PHE VAL PRO ALA SEQRES 5 A 470 ALA TYR LEU HIS GLY SER SER VAL ASN GLY TYR GLN ARG SEQRES 6 A 470 ALA THR ALA PRO ILE LEU MET PRO ASN THR VAL GLY GLY SEQRES 7 A 470 TYR LEU PRO GLY PRO ALA ASP ASP PRO GLN ARG VAL THR SEQRES 8 A 470 TRP PRO THR ASN ALA GLY THR ILE GLN GLN ALA LEU LYS SEQRES 9 A 470 ARG GLY TYR VAL VAL VAL ALA ALA GLY ILE ARG GLY ARG SEQRES 10 A 470 THR THR VAL ASP LYS SER GLY GLN ARG VAL GLY GLN ALA SEQRES 11 A 470 PRO ALA PHE ILE VAL ASP MET LYS ALA ALA ILE ARG TYR SEQRES 12 A 470 VAL LYS TYR ASN GLN GLY ARG LEU PRO GLY ASP ALA ASN SEQRES 13 A 470 ARG ILE ILE THR ASN GLY THR SER ALA GLY GLY ALA THR SEQRES 14 A 470 SER ALA LEU ALA GLY ALA SER GLY ASN SER ALA TYR PHE SEQRES 15 A 470 GLU PRO ALA LEU THR ALA LEU GLY ALA ALA PRO ALA THR SEQRES 16 A 470 ASP ASP ILE PHE ALA VAL SER ALA TYR CYS PRO ILE HIS SEQRES 17 A 470 ASN LEU GLU HIS ALA ASP MET ALA TYR GLU TRP GLN PHE SEQRES 18 A 470 ASN GLY ILE ASN ASP TRP HIS ARG TYR GLN PRO VAL ALA SEQRES 19 A 470 GLY THR THR LYS ASN GLY ARG PRO LYS PHE GLU PRO VAL SEQRES 20 A 470 SER GLY GLN LEU THR VAL GLU GLU GLN ALA LEU SER LEU SEQRES 21 A 470 ALA LEU LYS ALA GLN PHE SER THR TYR LEU ASN GLN LEU SEQRES 22 A 470 LYS LEU THR ALA SER ASP GLY THR HIS LEU THR LEU ASN SEQRES 23 A 470 GLU ALA GLY MET GLY SER PHE ARG ASP VAL VAL ARG GLN SEQRES 24 A 470 LEU LEU ILE SER SER ALA GLN THR ALA PHE ASP GLN GLY SEQRES 25 A 470 THR ASP ILE HIS LYS TYR ALA GLY PHE VAL VAL THR GLY SEQRES 26 A 470 ASN GLN VAL THR ASP LEU ASP LEU SER ALA TYR LEU LYS SEQRES 27 A 470 SER LEU THR ARG MET LYS ALA VAL PRO ALA PHE ASP GLN SEQRES 28 A 470 LEU ASP LEU THR SER PRO GLU ASN ASN LEU PHE GLY ASP SEQRES 29 A 470 ALA THR ALA LYS ALA LYS HIS PHE THR ALA LEU ALA GLN SEQRES 30 A 470 THR ARG SER THR VAL THR ALA GLN LEU ALA ASP ALA GLU SEQRES 31 A 470 LEU ILE GLN ALA ILE ASN PRO LEU SER TYR LEU THR THR SEQRES 32 A 470 THR SER SER GLN VAL ALA LYS HIS TRP ARG ILE ARG HIS SEQRES 33 A 470 GLY ALA ALA ASP ARG ASP THR SER PHE ALA ILE PRO ILE SEQRES 34 A 470 ILE LEU ALA ILE MET LEU GLU ASN HIS GLY TYR GLY ILE SEQRES 35 A 470 ASP PHE ALA LEU PRO TRP ASP ILE PRO HIS SER GLY ASP SEQRES 36 A 470 TYR ASP LEU GLY ASP LEU PHE SER TRP ILE ASP GLY LEU SEQRES 37 A 470 CYS GLN SEQRES 1 B 470 SER MET SER ASN ARG LEU ILE PHE ASP ALA ASP TRP LEU SEQRES 2 B 470 VAL PRO GLU GLN VAL GLN VAL ALA GLY GLN ALA ILE GLN SEQRES 3 B 470 TYR TYR ALA ALA ARG ASN ILE GLN TYR VAL GLN HIS PRO SEQRES 4 B 470 VAL ALA ALA ILE GLN VAL LEU ASN VAL PHE VAL PRO ALA SEQRES 5 B 470 ALA TYR LEU HIS GLY SER SER VAL ASN GLY TYR GLN ARG SEQRES 6 B 470 ALA THR ALA PRO ILE LEU MET PRO ASN THR VAL GLY GLY SEQRES 7 B 470 TYR LEU PRO GLY PRO ALA ASP ASP PRO GLN ARG VAL THR SEQRES 8 B 470 TRP PRO THR ASN ALA GLY THR ILE GLN GLN ALA LEU LYS SEQRES 9 B 470 ARG GLY TYR VAL VAL VAL ALA ALA GLY ILE ARG GLY ARG SEQRES 10 B 470 THR THR VAL ASP LYS SER GLY GLN ARG VAL GLY GLN ALA SEQRES 11 B 470 PRO ALA PHE ILE VAL ASP MET LYS ALA ALA ILE ARG TYR SEQRES 12 B 470 VAL LYS TYR ASN GLN GLY ARG LEU PRO GLY ASP ALA ASN SEQRES 13 B 470 ARG ILE ILE THR ASN GLY THR SER ALA GLY GLY ALA THR SEQRES 14 B 470 SER ALA LEU ALA GLY ALA SER GLY ASN SER ALA TYR PHE SEQRES 15 B 470 GLU PRO ALA LEU THR ALA LEU GLY ALA ALA PRO ALA THR SEQRES 16 B 470 ASP ASP ILE PHE ALA VAL SER ALA TYR CYS PRO ILE HIS SEQRES 17 B 470 ASN LEU GLU HIS ALA ASP MET ALA TYR GLU TRP GLN PHE SEQRES 18 B 470 ASN GLY ILE ASN ASP TRP HIS ARG TYR GLN PRO VAL ALA SEQRES 19 B 470 GLY THR THR LYS ASN GLY ARG PRO LYS PHE GLU PRO VAL SEQRES 20 B 470 SER GLY GLN LEU THR VAL GLU GLU GLN ALA LEU SER LEU SEQRES 21 B 470 ALA LEU LYS ALA GLN PHE SER THR TYR LEU ASN GLN LEU SEQRES 22 B 470 LYS LEU THR ALA SER ASP GLY THR HIS LEU THR LEU ASN SEQRES 23 B 470 GLU ALA GLY MET GLY SER PHE ARG ASP VAL VAL ARG GLN SEQRES 24 B 470 LEU LEU ILE SER SER ALA GLN THR ALA PHE ASP GLN GLY SEQRES 25 B 470 THR ASP ILE HIS LYS TYR ALA GLY PHE VAL VAL THR GLY SEQRES 26 B 470 ASN GLN VAL THR ASP LEU ASP LEU SER ALA TYR LEU LYS SEQRES 27 B 470 SER LEU THR ARG MET LYS ALA VAL PRO ALA PHE ASP GLN SEQRES 28 B 470 LEU ASP LEU THR SER PRO GLU ASN ASN LEU PHE GLY ASP SEQRES 29 B 470 ALA THR ALA LYS ALA LYS HIS PHE THR ALA LEU ALA GLN SEQRES 30 B 470 THR ARG SER THR VAL THR ALA GLN LEU ALA ASP ALA GLU SEQRES 31 B 470 LEU ILE GLN ALA ILE ASN PRO LEU SER TYR LEU THR THR SEQRES 32 B 470 THR SER SER GLN VAL ALA LYS HIS TRP ARG ILE ARG HIS SEQRES 33 B 470 GLY ALA ALA ASP ARG ASP THR SER PHE ALA ILE PRO ILE SEQRES 34 B 470 ILE LEU ALA ILE MET LEU GLU ASN HIS GLY TYR GLY ILE SEQRES 35 B 470 ASP PHE ALA LEU PRO TRP ASP ILE PRO HIS SER GLY ASP SEQRES 36 B 470 TYR ASP LEU GLY ASP LEU PHE SER TRP ILE ASP GLY LEU SEQRES 37 B 470 CYS GLN HET EGR A 501 14 HET PGE A 502 10 HET EGR B 501 14 HET PG4 B 502 13 HET PEG B 503 7 HET PEG B 504 7 HETNAM EGR ETHYL 3,4,5-TRIHYDROXYBENZOATE HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EGR ETHYL GALLATE FORMUL 3 EGR 2(C9 H10 O5) FORMUL 4 PGE C6 H14 O4 FORMUL 6 PG4 C8 H18 O5 FORMUL 7 PEG 2(C4 H10 O3) FORMUL 9 HOH *527(H2 O) HELIX 1 1 ASP A 8 LEU A 12 5 5 HELIX 2 2 ALA A 52 HIS A 55 5 4 HELIX 3 3 ASN A 94 ARG A 104 1 11 HELIX 4 4 PRO A 130 ASN A 146 1 17 HELIX 5 5 SER A 163 SER A 175 1 13 HELIX 6 6 SER A 178 TYR A 180 5 3 HELIX 7 7 PHE A 181 GLY A 189 1 9 HELIX 8 8 ASN A 208 GLU A 210 5 3 HELIX 9 9 HIS A 211 ASN A 221 1 11 HELIX 10 10 THR A 251 LYS A 273 1 23 HELIX 11 11 GLY A 290 ASP A 309 1 20 HELIX 12 12 ASP A 313 TYR A 317 5 5 HELIX 13 13 ASP A 331 THR A 340 1 10 HELIX 14 14 SER A 355 PHE A 361 1 7 HELIX 15 15 THR A 372 ARG A 378 1 7 HELIX 16 16 ASP A 387 ILE A 394 1 8 HELIX 17 17 ASN A 395 LEU A 400 5 6 HELIX 18 18 PHE A 424 HIS A 437 1 14 HELIX 19 19 ASP A 456 GLN A 469 1 14 HELIX 20 20 ASP B 8 LEU B 12 5 5 HELIX 21 21 ALA B 52 HIS B 55 5 4 HELIX 22 22 ASN B 94 GLY B 105 1 12 HELIX 23 23 PRO B 130 ASN B 146 1 17 HELIX 24 24 ASP B 153 ASN B 155 5 3 HELIX 25 25 SER B 163 SER B 175 1 13 HELIX 26 26 SER B 178 TYR B 180 5 3 HELIX 27 27 PHE B 181 GLY B 189 1 9 HELIX 28 28 ASN B 208 ASN B 221 1 14 HELIX 29 29 THR B 251 LEU B 272 1 22 HELIX 30 30 GLY B 290 ASP B 309 1 20 HELIX 31 31 ASP B 313 TYR B 317 5 5 HELIX 32 32 ASP B 331 THR B 340 1 10 HELIX 33 33 SER B 355 PHE B 361 1 7 HELIX 34 34 THR B 372 ARG B 378 1 7 HELIX 35 35 ASP B 387 ILE B 394 1 8 HELIX 36 36 PRO B 396 THR B 401 1 6 HELIX 37 37 PHE B 424 HIS B 437 1 14 HELIX 38 38 ASP B 456 GLN B 469 1 14 SHEET 1 A 9 VAL A 13 VAL A 19 0 SHEET 2 A 9 GLN A 22 GLN A 33 -1 O TYR A 26 N GLU A 15 SHEET 3 A 9 VAL A 44 PRO A 50 -1 O VAL A 49 N TYR A 27 SHEET 4 A 9 VAL A 107 ALA A 111 -1 O VAL A 108 N PHE A 48 SHEET 5 A 9 ILE A 69 PRO A 72 1 N LEU A 70 O VAL A 107 SHEET 6 A 9 ILE A 157 ASN A 160 1 O ILE A 158 N MET A 71 SHEET 7 A 9 ALA A 199 TYR A 203 1 O ALA A 199 N ILE A 157 SHEET 8 A 9 HIS A 410 ARG A 414 1 O HIS A 410 N VAL A 200 SHEET 9 A 9 GLY A 440 ALA A 444 1 O ASP A 442 N ILE A 413 SHEET 1 B 2 ASP A 225 ARG A 228 0 SHEET 2 B 2 VAL A 246 GLN A 249 -1 O VAL A 246 N ARG A 228 SHEET 1 C 2 PHE A 320 THR A 323 0 SHEET 2 C 2 GLN A 326 LEU A 330 -1 O GLN A 326 N THR A 323 SHEET 1 D 9 VAL B 13 VAL B 19 0 SHEET 2 D 9 GLN B 22 GLN B 33 -1 O TYR B 26 N GLU B 15 SHEET 3 D 9 VAL B 44 PRO B 50 -1 O VAL B 47 N ALA B 29 SHEET 4 D 9 VAL B 107 ALA B 111 -1 O VAL B 108 N PHE B 48 SHEET 5 D 9 ILE B 69 PRO B 72 1 N LEU B 70 O VAL B 107 SHEET 6 D 9 ILE B 157 THR B 162 1 O ILE B 158 N MET B 71 SHEET 7 D 9 ALA B 199 TYR B 203 1 O TYR B 203 N GLY B 161 SHEET 8 D 9 HIS B 410 ARG B 414 1 O HIS B 410 N VAL B 200 SHEET 9 D 9 GLY B 440 ALA B 444 1 O ASP B 442 N TRP B 411 SHEET 1 E 2 ASP B 225 THR B 235 0 SHEET 2 E 2 PRO B 241 GLN B 249 -1 O LYS B 242 N VAL B 232 SHEET 1 F 2 PHE B 320 THR B 323 0 SHEET 2 F 2 GLN B 326 LEU B 330 -1 O GLN B 326 N THR B 323 CISPEP 1 TRP A 91 PRO A 92 0 -3.96 CISPEP 2 ALA A 129 PRO A 130 0 1.09 CISPEP 3 VAL A 345 PRO A 346 0 -3.55 CISPEP 4 TRP B 91 PRO B 92 0 -3.57 CISPEP 5 ALA B 129 PRO B 130 0 -0.31 CISPEP 6 VAL B 345 PRO B 346 0 -8.51 SITE 1 AC1 10 GLY A 76 GLY A 77 TYR A 78 SER A 163 SITE 2 AC1 10 ALA A 164 ILE A 206 LYS A 343 GLU A 357 SITE 3 AC1 10 ASP A 421 HIS A 451 SITE 1 AC2 9 TRP A 218 GLN A 219 LYS A 262 ALA A 287 SITE 2 AC2 9 GLY A 288 ARG A 293 SER A 333 LEU A 336 SITE 3 AC2 9 HOH A 836 SITE 1 AC3 10 GLY B 76 GLY B 77 TYR B 78 SER B 163 SITE 2 AC3 10 ALA B 164 LYS B 343 GLU B 357 ASP B 421 SITE 3 AC3 10 HIS B 451 HOH B 802 SITE 1 AC4 11 ALA B 65 VAL B 119 SER B 122 GLY B 123 SITE 2 AC4 11 GLN B 124 ARG B 125 ASP B 153 ASN B 155 SITE 3 AC4 11 ARG B 156 HOH B 798 HOH B 832 SITE 1 AC5 6 LEU B 353 ALA B 368 LYS B 409 HIS B 410 SITE 2 AC5 6 PEG B 504 HOH B 713 SITE 1 AC6 6 ASP B 352 THR B 354 VAL B 381 LYS B 409 SITE 2 AC6 6 HIS B 410 PEG B 503 CRYST1 46.099 62.734 83.192 70.20 87.10 79.19 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021692 -0.004143 0.000310 0.00000 SCALE2 0.000000 0.016228 -0.005782 0.00000 SCALE3 0.000000 0.000000 0.012777 0.00000