PDB Short entry for 4J19 HEADER TRANSCRIPTION/DNA 01-FEB-13 4J19 TITLE STRUCTURE OF A NOVEL TELOMERE REPEAT BINDING PROTEIN BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 233-345; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*TP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*A)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HMBOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS TELOMERE REPEAT BINDING, TELOMERIC DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.KAPPEI,F.BUTTER,C.BENDA,M.SCHEIBE,I.DRASKOVIC,M.STEVENSE,C.LOPES AUTHOR 2 NOVO,C.BASQUIN,D.B.KRASTEV,R.KITTLER,R.JESSBERGER,A.J.LONDONO- AUTHOR 3 VALLEJO,M.MANN,F.BUCHHOLZ REVDAT 4 20-SEP-23 4J19 1 REMARK REVDAT 3 15-NOV-17 4J19 1 REMARK REVDAT 2 10-JUL-13 4J19 1 JRNL REVDAT 1 29-MAY-13 4J19 0 JRNL AUTH D.KAPPEI,F.BUTTER,C.BENDA,M.SCHEIBE,I.DRASKOVIC,M.STEVENSE, JRNL AUTH 2 C.L.NOVO,C.BASQUIN,M.ARAKI,K.ARAKI,D.B.KRASTEV,R.KITTLER, JRNL AUTH 3 R.JESSBERGER,J.A.LONDONO-VALLEJO,M.MANN,F.BUCHHOLZ JRNL TITL HOT1 IS A MAMMALIAN DIRECT TELOMERE REPEAT-BINDING PROTEIN JRNL TITL 2 CONTRIBUTING TO TELOMERASE RECRUITMENT. JRNL REF EMBO J. V. 32 1681 2013 JRNL REFN ISSN 0261-4189 JRNL PMID 23685356 JRNL DOI 10.1038/EMBOJ.2013.105 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1218) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 11682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1550 - 5.5446 0.95 2718 142 0.1534 0.2255 REMARK 3 2 5.5446 - 4.4020 0.94 2706 151 0.1584 0.1582 REMARK 3 3 4.4020 - 3.8459 0.95 2712 144 0.1536 0.2318 REMARK 3 4 3.8459 - 3.4944 0.96 2759 141 0.1716 0.2200 REMARK 3 5 3.4944 - 3.2440 0.96 2739 149 0.1897 0.2407 REMARK 3 6 3.2440 - 3.0528 0.96 2758 140 0.2651 0.3304 REMARK 3 7 3.0528 - 2.9000 0.94 2686 129 0.3182 0.3733 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2114 REMARK 3 ANGLE : 0.989 3014 REMARK 3 CHIRALITY : 0.043 326 REMARK 3 PLANARITY : 0.003 261 REMARK 3 DIHEDRAL : 24.244 840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 23.6493 28.3987 13.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.5031 T22: 0.5137 REMARK 3 T33: 0.4789 T12: 0.0331 REMARK 3 T13: 0.0300 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.4277 L22: 1.6589 REMARK 3 L33: 2.4369 L12: 1.9456 REMARK 3 L13: -0.6289 L23: -0.8966 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.0959 S13: -0.0050 REMARK 3 S21: 0.1242 S22: -0.0743 S23: -0.1767 REMARK 3 S31: -0.4141 S32: 0.1924 S33: 0.0149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.155 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2CUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 100 MM SODIUM ACETATE, REMARK 280 100 MM POTASSIUM SULFATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.71650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.24500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.71650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.24500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.83500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.71650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.24500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.83500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.71650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.24500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 233 REMARK 465 ALA A 234 REMARK 465 THR A 235 REMARK 465 LEU A 236 REMARK 465 SER A 237 REMARK 465 MET A 238 REMARK 465 ARG A 239 REMARK 465 PRO A 240 REMARK 465 ALA A 241 REMARK 465 PRO A 242 REMARK 465 ILE A 243 REMARK 465 PRO A 244 REMARK 465 ILE A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 PRO A 248 REMARK 465 GLU A 249 REMARK 465 TRP A 250 REMARK 465 ARG A 251 REMARK 465 GLN A 252 REMARK 465 THR A 253 REMARK 465 PRO A 254 REMARK 465 PRO A 255 REMARK 465 PRO A 256 REMARK 465 VAL A 257 REMARK 465 SER A 258 REMARK 465 ALA A 259 REMARK 465 THR A 260 REMARK 465 SER A 261 REMARK 465 GLY A 262 REMARK 465 THR A 263 REMARK 465 PHE A 264 REMARK 465 ARG A 265 REMARK 465 LEU A 266 REMARK 465 ARG A 267 REMARK 465 ARG A 268 REMARK 465 GLY B 233 REMARK 465 ALA B 234 REMARK 465 THR B 235 REMARK 465 LEU B 236 REMARK 465 SER B 237 REMARK 465 MET B 238 REMARK 465 ARG B 239 REMARK 465 PRO B 240 REMARK 465 ALA B 241 REMARK 465 PRO B 242 REMARK 465 ILE B 243 REMARK 465 PRO B 244 REMARK 465 ILE B 245 REMARK 465 GLU B 246 REMARK 465 ASP B 247 REMARK 465 PRO B 248 REMARK 465 GLU B 249 REMARK 465 TRP B 250 REMARK 465 ARG B 251 REMARK 465 GLN B 252 REMARK 465 THR B 253 REMARK 465 PRO B 254 REMARK 465 PRO B 255 REMARK 465 PRO B 256 REMARK 465 VAL B 257 REMARK 465 SER B 258 REMARK 465 ALA B 259 REMARK 465 THR B 260 REMARK 465 SER B 261 REMARK 465 GLY B 262 REMARK 465 THR B 263 REMARK 465 PHE B 264 REMARK 465 ARG B 265 REMARK 465 LEU B 266 REMARK 465 ILE B 343 REMARK 465 GLU B 344 REMARK 465 ALA B 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 ASN A 287 CG OD1 ND2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 343 CG1 CG2 CD1 REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 LYS B 338 CG CD CE NZ REMARK 470 ARG B 339 CG CD NE CZ NH1 NH2 REMARK 470 DC C 1 O5' REMARK 470 DT D 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 285 OH TYR A 285 3555 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 5 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT C 5 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG C 7 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 7 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT C 10 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 9 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC D 12 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DC D 12 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 15 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA D 19 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 344 36.55 -88.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 101 DBREF 4J19 A 233 345 UNP Q6NT76 HMBX1_HUMAN 233 345 DBREF 4J19 B 233 345 UNP Q6NT76 HMBX1_HUMAN 233 345 DBREF 4J19 C 1 19 PDB 4J19 4J19 1 19 DBREF 4J19 D 1 19 PDB 4J19 4J19 1 19 SEQRES 1 A 113 GLY ALA THR LEU SER MET ARG PRO ALA PRO ILE PRO ILE SEQRES 2 A 113 GLU ASP PRO GLU TRP ARG GLN THR PRO PRO PRO VAL SER SEQRES 3 A 113 ALA THR SER GLY THR PHE ARG LEU ARG ARG GLY SER ARG SEQRES 4 A 113 PHE THR TRP ARG LYS GLU CYS LEU ALA VAL MET GLU SER SEQRES 5 A 113 TYR PHE ASN GLU ASN GLN TYR PRO ASP GLU ALA LYS ARG SEQRES 6 A 113 GLU GLU ILE ALA ASN ALA CYS ASN ALA VAL ILE GLN LYS SEQRES 7 A 113 PRO GLY LYS LYS LEU SER ASP LEU GLU ARG VAL THR SER SEQRES 8 A 113 LEU LYS VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU SEQRES 9 A 113 ILE LYS ARG ARG ALA ASN ILE GLU ALA SEQRES 1 B 113 GLY ALA THR LEU SER MET ARG PRO ALA PRO ILE PRO ILE SEQRES 2 B 113 GLU ASP PRO GLU TRP ARG GLN THR PRO PRO PRO VAL SER SEQRES 3 B 113 ALA THR SER GLY THR PHE ARG LEU ARG ARG GLY SER ARG SEQRES 4 B 113 PHE THR TRP ARG LYS GLU CYS LEU ALA VAL MET GLU SER SEQRES 5 B 113 TYR PHE ASN GLU ASN GLN TYR PRO ASP GLU ALA LYS ARG SEQRES 6 B 113 GLU GLU ILE ALA ASN ALA CYS ASN ALA VAL ILE GLN LYS SEQRES 7 B 113 PRO GLY LYS LYS LEU SER ASP LEU GLU ARG VAL THR SER SEQRES 8 B 113 LEU LYS VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU SEQRES 9 B 113 ILE LYS ARG ARG ALA ASN ILE GLU ALA SEQRES 1 C 19 DC DT DG DT DT DA DG DG DG DT DT DA DG SEQRES 2 C 19 DG DG DT DT DA DG SEQRES 1 D 19 DT DC DT DA DA DC DC DC DT DA DA DC DC SEQRES 2 D 19 DC DT DA DA DC DA HET CL C 101 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- FORMUL 6 HOH *66(H2 O) HELIX 1 1 ARG A 275 ASN A 287 1 13 HELIX 2 2 ASP A 293 GLN A 309 1 17 HELIX 3 3 THR A 322 GLU A 344 1 23 HELIX 4 4 ARG B 275 ASN B 289 1 15 HELIX 5 5 ASP B 293 GLN B 309 1 17 HELIX 6 6 THR B 322 ALA B 341 1 20 SITE 1 AC1 4 LYS A 335 HOH A 416 DG C 13 HOH D 112 CRYST1 111.433 116.490 75.670 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013215 0.00000