PDB Short entry for 4J1X HEADER METAL BINDING PROTEIN 03-FEB-13 4J1X TITLE CRYSTAL STRUCTURE OF FE(II)-HPPE WITH ALTERNATIVE SUBSTRATE (S)-1-HPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPOXIDASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: METAL AND SUBSTRATE BINDING DOMAINS (UNP RESIDUES 2-198); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES WEDMORENSIS; SOURCE 3 ORGANISM_TAXID: 43759; SOURCE 4 GENE: FOM4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPL001 KEYWDS KETO PRODUCT, HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE, MONONUCLEAR KEYWDS 2 NON-HEME IRON ENZYME, METAL BINDING PROTEIN, CUPIN FOLD, PHOSPHONO KEYWDS 3 MIGRATION EXPDTA X-RAY DIFFRACTION AUTHOR C.L.DRENNAN,M.DEY REVDAT 3 20-SEP-23 4J1X 1 REMARK LINK REVDAT 2 17-APR-13 4J1X 1 JRNL REVDAT 1 03-APR-13 4J1X 0 JRNL AUTH W.C.CHANG,M.DEY,P.LIU,S.O.MANSOORABADI,S.J.MOON,Z.K.ZHAO, JRNL AUTH 2 C.L.DRENNAN,H.W.LIU JRNL TITL MECHANISTIC STUDIES OF AN UNPRECEDENTED ENZYME-CATALYSED JRNL TITL 2 1,2-PHOSPHONO-MIGRATION REACTION. JRNL REF NATURE V. 496 114 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23552950 JRNL DOI 10.1038/NATURE11998 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 1.151 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ZZ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS.HCL, PH 8.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.72800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.72800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.70950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.72800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.72800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.70950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.72800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.72800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.70950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.72800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.72800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.70950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 222.91200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.45600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.45600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.45600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 111.45600 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 111.45600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 CD - NE - CZ ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG C 58 CD - NE - CZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG C 58 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG C 58 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 17.32 58.74 REMARK 500 ALA A 114 66.97 -151.75 REMARK 500 SER A 136 31.89 -86.27 REMARK 500 HIS A 177 -13.61 78.11 REMARK 500 LYS A 186 120.59 -37.37 REMARK 500 ASN B 99 16.98 58.59 REMARK 500 ALA B 114 67.04 -151.56 REMARK 500 SER B 136 31.88 -86.44 REMARK 500 HIS B 177 -13.34 78.13 REMARK 500 LYS B 186 120.48 -37.29 REMARK 500 ASN C 99 17.35 58.60 REMARK 500 ALA C 114 67.11 -151.42 REMARK 500 SER C 136 31.90 -86.22 REMARK 500 HIS C 177 -13.76 78.54 REMARK 500 LYS C 186 120.38 -36.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 138 NE2 REMARK 620 2 GLU A 142 OE1 89.5 REMARK 620 3 HIS A 180 NE2 91.2 91.4 REMARK 620 4 1JJ A 202 O2 100.6 166.5 97.4 REMARK 620 5 1JJ A 202 O3 167.6 86.9 100.8 81.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 138 NE2 REMARK 620 2 GLU B 142 OE1 89.9 REMARK 620 3 HIS B 180 NE2 91.0 92.3 REMARK 620 4 1JJ B 202 O2 107.7 162.3 88.7 REMARK 620 5 1JJ B 202 O3 177.3 89.5 91.6 72.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 138 NE2 REMARK 620 2 GLU C 142 OE1 90.8 REMARK 620 3 HIS C 180 NE2 88.7 89.3 REMARK 620 4 1JJ C 202 O2 98.0 159.9 108.9 REMARK 620 5 1JJ C 202 O3 157.4 85.4 113.5 79.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1JJ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1JJ B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1JJ C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J1W RELATED DB: PDB REMARK 900 FE(II)-HPPE WITH ALTERNATIVE SUBSTRATES (R)-1-HPP AND (S)-1-HPP REMARK 900 RELATED ID: 3SCF RELATED DB: PDB REMARK 900 FE(II)-HPPE WITH S-HPP AND NO REMARK 900 RELATED ID: 3SCG RELATED DB: PDB REMARK 900 FE(II)-HPPE WITH R-HPP REMARK 900 RELATED ID: 1ZZ8 RELATED DB: PDB REMARK 900 FE(II)-HPPE WITH SUBSTRATE FORM 2 REMARK 900 RELATED ID: 1ZZ7 RELATED DB: PDB REMARK 900 FE(II)-HPPE WITH SUBSTRATE FORM 1 DBREF 4J1X A 2 198 UNP Q56185 Q56185_STRWE 2 198 DBREF 4J1X B 2 198 UNP Q56185 Q56185_STRWE 2 198 DBREF 4J1X C 2 198 UNP Q56185 Q56185_STRWE 2 198 SEQRES 1 A 197 SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU LEU SEQRES 2 A 197 LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS ALA SEQRES 3 A 197 ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR VAL SEQRES 4 A 197 ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR LEU SEQRES 5 A 197 THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SER SEQRES 6 A 197 ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU ASP SEQRES 7 A 197 ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO ILE SEQRES 8 A 197 LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL TYR SEQRES 9 A 197 ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU VAL SEQRES 10 A 197 PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP ASP SEQRES 11 A 197 ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE LEU SEQRES 12 A 197 PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY ASP SEQRES 13 A 197 LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY ALA SEQRES 14 A 197 SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE THR SEQRES 15 A 197 ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA VAL SEQRES 16 A 197 ASN PHE SEQRES 1 B 197 SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU LEU SEQRES 2 B 197 LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS ALA SEQRES 3 B 197 ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR VAL SEQRES 4 B 197 ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR LEU SEQRES 5 B 197 THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SER SEQRES 6 B 197 ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU ASP SEQRES 7 B 197 ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO ILE SEQRES 8 B 197 LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL TYR SEQRES 9 B 197 ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU VAL SEQRES 10 B 197 PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP ASP SEQRES 11 B 197 ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE LEU SEQRES 12 B 197 PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY ASP SEQRES 13 B 197 LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY ALA SEQRES 14 B 197 SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE THR SEQRES 15 B 197 ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA VAL SEQRES 16 B 197 ASN PHE SEQRES 1 C 197 SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU LEU SEQRES 2 C 197 LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS ALA SEQRES 3 C 197 ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR VAL SEQRES 4 C 197 ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR LEU SEQRES 5 C 197 THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SER SEQRES 6 C 197 ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU ASP SEQRES 7 C 197 ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO ILE SEQRES 8 C 197 LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL TYR SEQRES 9 C 197 ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU VAL SEQRES 10 C 197 PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP ASP SEQRES 11 C 197 ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE LEU SEQRES 12 C 197 PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY ASP SEQRES 13 C 197 LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY ALA SEQRES 14 C 197 SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE THR SEQRES 15 C 197 ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA VAL SEQRES 16 C 197 ASN PHE HET FE2 A 201 1 HET 1JJ A 202 8 HET GOL A 203 6 HET FE2 B 201 1 HET 1JJ B 202 8 HET FE2 C 201 1 HET 1JJ C 202 8 HETNAM FE2 FE (II) ION HETNAM 1JJ [(1S)-1-HYDROXYPROPYL]PHOSPHONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 FE2 3(FE 2+) FORMUL 5 1JJ 3(C3 H9 O4 P) FORMUL 6 GOL C3 H8 O3 FORMUL 11 HOH *33(H2 O) HELIX 1 1 THR A 6 VAL A 22 1 17 HELIX 2 2 ASP A 25 GLY A 34 1 10 HELIX 3 3 THR A 36 GLU A 44 1 9 HELIX 4 4 THR A 52 LEU A 63 1 12 HELIX 5 5 SER A 66 THR A 71 1 6 HELIX 6 6 MET A 86 ARG A 90 5 5 HELIX 7 7 ASN A 128 ALA A 132 5 5 HELIX 8 8 ALA B 7 VAL B 22 1 16 HELIX 9 9 ASP B 25 GLY B 34 1 10 HELIX 10 10 THR B 36 GLU B 44 1 9 HELIX 11 11 THR B 52 LEU B 63 1 12 HELIX 12 12 SER B 66 THR B 71 1 6 HELIX 13 13 MET B 86 ARG B 90 5 5 HELIX 14 14 ASN B 128 ALA B 132 5 5 HELIX 15 15 THR C 6 VAL C 22 1 17 HELIX 16 16 ASP C 25 GLY C 34 1 10 HELIX 17 17 THR C 36 GLU C 44 1 9 HELIX 18 18 THR C 52 LEU C 63 1 12 HELIX 19 19 SER C 66 THR C 71 1 6 HELIX 20 20 MET C 86 ARG C 90 5 5 HELIX 21 21 ASN C 128 ALA C 132 5 5 SHEET 1 A 6 ILE A 92 ARG A 97 0 SHEET 2 A 6 VAL A 100 CYS A 107 -1 O TYR A 105 N LEU A 93 SHEET 3 A 6 VAL A 118 VAL A 124 -1 O VAL A 121 N ASN A 106 SHEET 4 A 6 ALA A 191 ASN A 197 -1 O LEU A 193 N VAL A 122 SHEET 5 A 6 GLU A 142 GLU A 148 -1 N PHE A 143 O VAL A 196 SHEET 6 A 6 SER A 171 VAL A 174 -1 O MET A 172 N LEU A 144 SHEET 1 B 3 PRO A 161 LEU A 166 0 SHEET 2 B 3 ILE A 151 GLY A 156 -1 N MET A 153 O ALA A 164 SHEET 3 B 3 HIS A 180 ALA A 184 -1 O THR A 183 N HIS A 152 SHEET 1 C 6 ILE B 92 ARG B 97 0 SHEET 2 C 6 VAL B 100 CYS B 107 -1 O TYR B 105 N LEU B 93 SHEET 3 C 6 VAL B 118 VAL B 124 -1 O VAL B 121 N ASN B 106 SHEET 4 C 6 ALA B 191 ASN B 197 -1 O LEU B 193 N VAL B 122 SHEET 5 C 6 GLU B 142 GLU B 148 -1 N PHE B 143 O VAL B 196 SHEET 6 C 6 SER B 171 VAL B 174 -1 O MET B 172 N LEU B 144 SHEET 1 D 3 PRO B 161 LEU B 166 0 SHEET 2 D 3 ILE B 151 GLY B 156 -1 N MET B 153 O ALA B 164 SHEET 3 D 3 HIS B 180 ALA B 184 -1 O THR B 183 N HIS B 152 SHEET 1 E 6 ILE C 92 ARG C 97 0 SHEET 2 E 6 VAL C 100 CYS C 107 -1 O TYR C 105 N LEU C 93 SHEET 3 E 6 VAL C 118 VAL C 124 -1 O VAL C 121 N ASN C 106 SHEET 4 E 6 ALA C 191 ASN C 197 -1 O LEU C 193 N VAL C 122 SHEET 5 E 6 GLU C 142 GLU C 148 -1 N PHE C 143 O VAL C 196 SHEET 6 E 6 SER C 171 VAL C 174 -1 O MET C 172 N LEU C 144 SHEET 1 F 3 PRO C 161 LEU C 166 0 SHEET 2 F 3 ILE C 151 GLY C 156 -1 N MET C 153 O ALA C 164 SHEET 3 F 3 HIS C 180 ALA C 184 -1 O THR C 183 N HIS C 152 LINK NE2 HIS A 138 FE FE2 A 201 1555 1555 2.14 LINK OE1 GLU A 142 FE FE2 A 201 1555 1555 2.16 LINK NE2 HIS A 180 FE FE2 A 201 1555 1555 2.21 LINK FE FE2 A 201 O2 1JJ A 202 1555 1555 1.99 LINK FE FE2 A 201 O3 1JJ A 202 1555 1555 2.29 LINK NE2 HIS B 138 FE FE2 B 201 1555 1555 2.18 LINK OE1 GLU B 142 FE FE2 B 201 1555 1555 2.13 LINK NE2 HIS B 180 FE FE2 B 201 1555 1555 2.19 LINK FE FE2 B 201 O2 1JJ B 202 1555 1555 2.26 LINK FE FE2 B 201 O3 1JJ B 202 1555 1555 2.48 LINK NE2 HIS C 138 FE FE2 C 201 1555 1555 2.13 LINK OE1 GLU C 142 FE FE2 C 201 1555 1555 2.13 LINK NE2 HIS C 180 FE FE2 C 201 1555 1555 2.32 LINK FE FE2 C 201 O2 1JJ C 202 1555 1555 1.74 LINK FE FE2 C 201 O3 1JJ C 202 1555 1555 2.54 SITE 1 AC1 5 HIS A 138 GLU A 142 HIS A 180 1JJ A 202 SITE 2 AC1 5 HOH A 303 SITE 1 AC2 11 ARG A 97 TYR A 103 TYR A 105 ASN A 135 SITE 2 AC2 11 HIS A 138 GLU A 142 HIS A 180 PHE A 182 SITE 3 AC2 11 FE2 A 201 HOH A 305 LYS B 23 SITE 1 AC3 4 ARG A 113 ALA A 114 PRO A 115 SER A 116 SITE 1 AC4 4 HIS B 138 GLU B 142 HIS B 180 1JJ B 202 SITE 1 AC5 12 LYS A 23 ARG B 97 TYR B 103 TYR B 105 SITE 2 AC5 12 ASN B 135 HIS B 138 GLU B 142 HIS B 180 SITE 3 AC5 12 PHE B 182 LEU B 193 FE2 B 201 HOH B 302 SITE 1 AC6 4 HIS C 138 GLU C 142 HIS C 180 1JJ C 202 SITE 1 AC7 9 LYS C 23 ARG C 97 TYR C 103 TYR C 105 SITE 2 AC7 9 ASN C 135 HIS C 138 GLU C 142 HIS C 180 SITE 3 AC7 9 FE2 C 201 CRYST1 111.456 111.456 151.419 90.00 90.00 90.00 P 42 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006604 0.00000