PDB Short entry for 4JSY HEADER TRANSFERASE 22-MAR-13 4JSY TITLE STRUCTURE OF CLOSTRIDIUM THERMOCELLUM POLYNUCLEOTIDE KINASE BOUND TO TITLE 2 GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPHOSPHOESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.78; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_2768; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA REPAIR, P-LOOP PHOSPHOTRANSFERASE, POLYNUCLEOTIDE KINASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR U.DAS,L.K.WANG,P.SMITH,S.SHUMAN REVDAT 2 18-DEC-13 4JSY 1 JRNL REVDAT 1 28-AUG-13 4JSY 0 JRNL AUTH U.DAS,L.K.WANG,P.SMITH,S.SHUMAN JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE PHOSPHATE DONOR JRNL TITL 2 SPECIFICITY OF THE POLYNUCLEOTIDE KINASE COMPONENT OF THE JRNL TITL 3 BACTERIAL PNKPHEN1 RNA REPAIR SYSTEM. JRNL REF BIOCHEMISTRY V. 52 4734 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23721485 JRNL DOI 10.1021/BI400412X REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 20830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4980 - 4.8573 1.00 1762 150 0.1650 0.1921 REMARK 3 2 4.8573 - 3.8567 1.00 1652 142 0.1430 0.1712 REMARK 3 3 3.8567 - 3.3695 1.00 1649 142 0.1656 0.1843 REMARK 3 4 3.3695 - 3.0616 1.00 1624 139 0.1798 0.2263 REMARK 3 5 3.0616 - 2.8422 1.00 1615 137 0.1885 0.2082 REMARK 3 6 2.8422 - 2.6747 1.00 1601 139 0.1761 0.2253 REMARK 3 7 2.6747 - 2.5408 1.00 1624 139 0.1853 0.2263 REMARK 3 8 2.5408 - 2.4302 1.00 1615 139 0.1720 0.2273 REMARK 3 9 2.4302 - 2.3367 1.00 1594 137 0.1755 0.2500 REMARK 3 10 2.3367 - 2.2560 1.00 1574 136 0.1636 0.2234 REMARK 3 11 2.2560 - 2.1855 1.00 1608 138 0.1609 0.2229 REMARK 3 12 2.1855 - 2.1400 0.80 1270 104 0.1648 0.1976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2871 REMARK 3 ANGLE : 0.996 3890 REMARK 3 CHIRALITY : 0.059 439 REMARK 3 PLANARITY : 0.004 490 REMARK 3 DIHEDRAL : 15.563 1114 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20889 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 39.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -999.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT REFINEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, 5MM DTT, 100MM REMARK 280 MGCL2, 16-18% PEG 3350, 2MM GTP, PH 5.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.65300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.77300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.39050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.77300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.65300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.39050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 38 NH2 ARG A 123 2.14 REMARK 500 OE2 GLU B 163 O HOH B 1131 2.17 REMARK 500 NE2 GLN B 169 O HOH B 1192 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 168 55.67 -93.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP A1001 O1G REMARK 620 2 SER A 22 OG 172.8 REMARK 620 3 GTP A1001 O1B 87.9 85.0 REMARK 620 4 HOH A1178 O 88.2 91.3 96.1 REMARK 620 5 HOH A1102 O 93.7 93.5 176.8 86.7 REMARK 620 6 HOH A1101 O 92.2 88.9 88.1 175.7 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP B1001 O2G REMARK 620 2 GTP B1001 O2B 95.2 REMARK 620 3 SER B 22 OG 173.0 87.5 REMARK 620 4 HOH B1104 O 95.4 88.4 91.1 REMARK 620 5 HOH B1103 O 91.6 172.0 85.3 95.2 REMARK 620 6 HOH B1102 O 91.2 91.9 82.3 173.4 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JST RELATED DB: PDB REMARK 900 RELATED ID: 4JT2 RELATED DB: PDB REMARK 900 RELATED ID: 4JT4 RELATED DB: PDB REMARK 900 RELATED ID: 4GP7 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ATP REMARK 900 RELATED ID: 4GP6 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ADP DBREF 4JSY A 1 170 UNP A3DJ38 A3DJ38_CLOTH 1 170 DBREF 4JSY B 1 170 UNP A3DJ38 A3DJ38_CLOTH 1 170 SEQADV 4JSY SER A 0 UNP A3DJ38 EXPRESSION TAG SEQADV 4JSY MSE A 44 UNP A3DJ38 VAL 44 ENGINEERED MUTATION SEQADV 4JSY MSE A 137 UNP A3DJ38 LEU 137 ENGINEERED MUTATION SEQADV 4JSY SER B 0 UNP A3DJ38 EXPRESSION TAG SEQADV 4JSY MSE B 44 UNP A3DJ38 VAL 44 ENGINEERED MUTATION SEQADV 4JSY MSE B 137 UNP A3DJ38 LEU 137 ENGINEERED MUTATION SEQRES 1 A 171 SER MSE LYS LEU THR ILE PRO GLU LEU SER LEU VAL VAL SEQRES 2 A 171 LEU ILE GLY SER SER GLY SER GLY LYS SER THR PHE ALA SEQRES 3 A 171 LYS LYS HIS PHE LYS PRO THR GLU VAL ILE SER SER ASP SEQRES 4 A 171 PHE CYS ARG GLY LEU MSE SER ASP ASP GLU ASN ASP GLN SEQRES 5 A 171 THR VAL THR GLY ALA ALA PHE ASP VAL LEU HIS TYR ILE SEQRES 6 A 171 VAL SER LYS ARG LEU GLN LEU GLY LYS LEU THR VAL VAL SEQRES 7 A 171 ASP ALA THR ASN VAL GLN GLU SER ALA ARG LYS PRO LEU SEQRES 8 A 171 ILE GLU ILE ALA LYS ASP TYR HIS CYS PHE PRO VAL ALA SEQRES 9 A 171 VAL VAL PHE ASN LEU PRO GLU LYS VAL CYS GLN GLU ARG SEQRES 10 A 171 ASN LYS ASN ARG THR ASP ARG GLN VAL GLU GLU TYR VAL SEQRES 11 A 171 ILE ARG LYS HIS THR GLN GLN MSE LYS LYS SER ILE LYS SEQRES 12 A 171 GLY LEU GLN ARG GLU GLY PHE ARG TYR VAL TYR ILE LEU SEQRES 13 A 171 ASN SER PRO GLU GLU VAL GLU GLU VAL VAL PHE GLU ARG SEQRES 14 A 171 GLN PRO SEQRES 1 B 171 SER MSE LYS LEU THR ILE PRO GLU LEU SER LEU VAL VAL SEQRES 2 B 171 LEU ILE GLY SER SER GLY SER GLY LYS SER THR PHE ALA SEQRES 3 B 171 LYS LYS HIS PHE LYS PRO THR GLU VAL ILE SER SER ASP SEQRES 4 B 171 PHE CYS ARG GLY LEU MSE SER ASP ASP GLU ASN ASP GLN SEQRES 5 B 171 THR VAL THR GLY ALA ALA PHE ASP VAL LEU HIS TYR ILE SEQRES 6 B 171 VAL SER LYS ARG LEU GLN LEU GLY LYS LEU THR VAL VAL SEQRES 7 B 171 ASP ALA THR ASN VAL GLN GLU SER ALA ARG LYS PRO LEU SEQRES 8 B 171 ILE GLU ILE ALA LYS ASP TYR HIS CYS PHE PRO VAL ALA SEQRES 9 B 171 VAL VAL PHE ASN LEU PRO GLU LYS VAL CYS GLN GLU ARG SEQRES 10 B 171 ASN LYS ASN ARG THR ASP ARG GLN VAL GLU GLU TYR VAL SEQRES 11 B 171 ILE ARG LYS HIS THR GLN GLN MSE LYS LYS SER ILE LYS SEQRES 12 B 171 GLY LEU GLN ARG GLU GLY PHE ARG TYR VAL TYR ILE LEU SEQRES 13 B 171 ASN SER PRO GLU GLU VAL GLU GLU VAL VAL PHE GLU ARG SEQRES 14 B 171 GLN PRO MODRES 4JSY MSE A 1 MET SELENOMETHIONINE MODRES 4JSY MSE A 44 MET SELENOMETHIONINE MODRES 4JSY MSE A 137 MET SELENOMETHIONINE MODRES 4JSY MSE B 1 MET SELENOMETHIONINE MODRES 4JSY MSE B 44 MET SELENOMETHIONINE MODRES 4JSY MSE B 137 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 8 HET MSE A 137 8 HET MSE B 1 8 HET MSE B 44 8 HET MSE B 137 8 HET GTP A1001 32 HET MG A1002 1 HET GTP B1001 32 HET MG B1002 1 HETNAM MSE SELENOMETHIONINE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *180(H2 O) HELIX 1 1 GLY A 20 PHE A 29 1 10 HELIX 2 2 LYS A 30 THR A 32 5 3 HELIX 3 3 SER A 37 SER A 45 1 9 HELIX 4 4 ASP A 50 THR A 52 5 3 HELIX 5 5 VAL A 53 LEU A 71 1 19 HELIX 6 6 GLN A 83 TYR A 97 1 15 HELIX 7 7 PRO A 109 ASN A 119 1 11 HELIX 8 8 GLU A 126 ILE A 141 1 16 HELIX 9 9 GLY A 143 GLY A 148 1 6 HELIX 10 10 SER A 157 GLU A 163 1 7 HELIX 11 11 GLY B 20 PHE B 29 1 10 HELIX 12 12 LYS B 30 THR B 32 5 3 HELIX 13 13 SER B 37 SER B 45 1 9 HELIX 14 14 VAL B 53 LEU B 71 1 19 HELIX 15 15 GLN B 83 TYR B 97 1 15 HELIX 16 16 PRO B 109 ARG B 120 1 12 HELIX 17 17 GLU B 126 ILE B 141 1 16 HELIX 18 18 GLY B 143 GLY B 148 1 6 HELIX 19 19 SER B 157 GLU B 163 1 7 SHEET 1 A 2 MSE A 1 PRO A 6 0 SHEET 2 A 2 VAL A 164 GLN A 169 1 O VAL A 165 N LEU A 3 SHEET 1 B 5 VAL A 34 SER A 36 0 SHEET 2 B 5 THR A 75 ASP A 78 1 O VAL A 76 N ILE A 35 SHEET 3 B 5 SER A 9 ILE A 14 1 N VAL A 11 O VAL A 77 SHEET 4 B 5 PHE A 100 PHE A 106 1 O PHE A 106 N ILE A 14 SHEET 5 B 5 TYR A 151 LEU A 155 1 O TYR A 153 N VAL A 105 SHEET 1 C 2 MSE B 1 THR B 4 0 SHEET 2 C 2 VAL B 164 GLU B 167 1 O GLU B 167 N LEU B 3 SHEET 1 D 5 VAL B 34 SER B 36 0 SHEET 2 D 5 THR B 75 ASP B 78 1 O VAL B 76 N ILE B 35 SHEET 3 D 5 SER B 9 ILE B 14 1 N VAL B 11 O THR B 75 SHEET 4 D 5 PHE B 100 PHE B 106 1 O VAL B 102 N VAL B 12 SHEET 5 D 5 TYR B 151 LEU B 155 1 O LEU B 155 N VAL B 105 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LEU A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N SER A 45 1555 1555 1.33 LINK C GLN A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N LYS A 138 1555 1555 1.33 LINK C SER B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C LEU B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N SER B 45 1555 1555 1.33 LINK C GLN B 136 N MSE B 137 1555 1555 1.33 LINK C MSE B 137 N LYS B 138 1555 1555 1.33 LINK O1G GTP A1001 MG MG A1002 1555 1555 1.91 LINK O2G GTP B1001 MG MG B1002 1555 1555 1.93 LINK OG SER A 22 MG MG A1002 1555 1555 1.99 LINK O2B GTP B1001 MG MG B1002 1555 1555 2.00 LINK O1B GTP A1001 MG MG A1002 1555 1555 2.08 LINK OG SER B 22 MG MG B1002 1555 1555 2.14 LINK MG MG A1002 O HOH A1178 1555 1555 2.05 LINK MG MG B1002 O HOH B1104 1555 1555 2.06 LINK MG MG A1002 O HOH A1102 1555 1555 2.08 LINK MG MG B1002 O HOH B1103 1555 1555 2.08 LINK MG MG A1002 O HOH A1101 1555 1555 2.09 LINK MG MG B1002 O HOH B1102 1555 1555 2.17 SITE 1 AC1 20 SER A 16 SER A 17 GLY A 18 SER A 19 SITE 2 AC1 20 GLY A 20 LYS A 21 SER A 22 THR A 23 SITE 3 AC1 20 ARG A 116 ARG A 120 ARG A 123 GLU A 162 SITE 4 AC1 20 MG A1002 HOH A1101 HOH A1102 HOH A1147 SITE 5 AC1 20 HOH A1162 HOH A1163 HOH A1170 HOH A1178 SITE 1 AC2 5 SER A 22 GTP A1001 HOH A1101 HOH A1102 SITE 2 AC2 5 HOH A1178 SITE 1 AC3 20 SER B 16 SER B 17 GLY B 18 SER B 19 SITE 2 AC3 20 GLY B 20 LYS B 21 SER B 22 THR B 23 SITE 3 AC3 20 ARG B 116 ARG B 120 MG B1002 HOH B1102 SITE 4 AC3 20 HOH B1103 HOH B1104 HOH B1122 HOH B1132 SITE 5 AC3 20 HOH B1135 HOH B1139 HOH B1151 HOH B1182 SITE 1 AC4 5 SER B 22 GTP B1001 HOH B1102 HOH B1103 SITE 2 AC4 5 HOH B1104 CRYST1 45.306 66.781 119.546 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008365 0.00000