PDB Short entry for 4JXT HEADER PROTEIN BINDING 28-MAR-13 4JXT TITLE CID OF HUMAN RPRD1A IN COMPLEX WITH A PHOSPHORYLATED PEPTIDE FROM TITLE 2 RPB1-CTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN COMPND 3 1A; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 1-137; COMPND 6 SYNONYM: CYCLIN-DEPENDENT KINASE INHIBITOR 2B-RELATED PROTEIN, COMPND 7 P15INK4B-RELATED PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 1612-1630; COMPND 13 SYNONYM: RNA POLYMERASE II SUBUNIT B1, DNA-DIRECTED RNA POLYMERASE II COMPND 14 SUBUNIT A, DNA-DIRECTED RNA POLYMERASE III LARGEST SUBUNIT, RNA- COMPND 15 DIRECTED RNA POLYMERASE II SUBUNIT RPB1; COMPND 16 EC: 2.7.7.6, 2.7.7.48; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPRD1A, P15RS; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL 21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15 MHL; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS STRUCTURAL GENOMICS CONSORTIUM, STRUCTURAL GENOMICS, SGC, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Z.NI,C.XU,W.TEMPEL,M.EL BAKKOURI,P.LOPPNAU,X.GUO,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,J.F.GREENBLATT,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 20-SEP-23 4JXT 1 SEQADV LINK REVDAT 4 04-APR-18 4JXT 1 REMARK REVDAT 3 20-AUG-14 4JXT 1 JRNL REVDAT 2 16-JUL-14 4JXT 1 JRNL REVDAT 1 13-NOV-13 4JXT 0 JRNL AUTH Z.NI,C.XU,X.GUO,G.O.HUNTER,O.V.KUZNETSOVA,W.TEMPEL,E.MARCON, JRNL AUTH 2 G.ZHONG,H.GUO,W.H.KUO,J.LI,P.YOUNG,J.B.OLSEN,C.WAN, JRNL AUTH 3 P.LOPPNAU,M.EL BAKKOURI,G.A.SENISTERRA,H.HE,H.HUANG, JRNL AUTH 4 S.S.SIDHU,A.EMILI,S.MURPHY,A.L.MOSLEY,C.H.ARROWSMITH,J.MIN, JRNL AUTH 5 J.F.GREENBLATT JRNL TITL RPRD1A AND RPRD1B ARE HUMAN RNA POLYMERASE II C-TERMINAL JRNL TITL 2 DOMAIN SCAFFOLDS FOR SER5 DEPHOSPHORYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 686 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24997600 JRNL DOI 10.1038/NSMB.2853 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0027 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 12195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.838 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12700 REMARK 3 B22 (A**2) : 0.12700 REMARK 3 B33 (A**2) : -0.25400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1216 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1134 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1658 ; 1.469 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2627 ; 0.861 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 148 ; 5.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;37.677 ;24.107 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 216 ;13.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 186 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1336 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 273 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9502 4.5692 -0.1057 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: 0.0306 REMARK 3 T33: 0.0380 T12: 0.0005 REMARK 3 T13: -0.0114 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.8320 L22: 2.5970 REMARK 3 L33: 3.8251 L12: 0.4609 REMARK 3 L13: 0.7980 L23: 1.4488 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.1436 S13: 0.0449 REMARK 3 S21: 0.0102 S22: -0.0561 S23: -0.1554 REMARK 3 S31: -0.2020 S32: 0.0168 S33: 0.0231 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1620 B 1630 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1049 12.2440 -3.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.3325 T22: 0.0542 REMARK 3 T33: 0.1754 T12: 0.1328 REMARK 3 T13: -0.1416 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 12.6328 L22: 2.4641 REMARK 3 L33: 14.1887 L12: -0.8429 REMARK 3 L13: -8.6807 L23: 5.0266 REMARK 3 S TENSOR REMARK 3 S11: -0.5077 S12: -0.1561 S13: 0.5028 REMARK 3 S21: -0.6558 S22: -0.2590 S23: 0.5404 REMARK 3 S31: -0.8708 S32: -0.4515 S33: 0.7668 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REMARK 3 WITH TLS ADDED REMARK 3 DIFFERENCE ELECTRON DENSITY FOR THE Y1629 RESIDUE OF THE PEPTIDE REMARK 3 LIGAND SUGGESTS AN ALTERNATIVE INTERPRETATION OF THE ELECTRON REMARK 3 DENSITY IN THIS AREA. IT IS POSSIBLE THAT THAT THE PEPTIDE'S MAIN REMARK 3 CHAIN CONTINUES WHERE THE Y1629 SIDE CHAIN IS CURRENTLY MODELED. REMARK 3 ELECTRON DENSITY SUGGESTS COVALENT MODIFICATION OF CYS-100. ARP/ REMARK 3 WARP, COOT, THE MOLOPROBITY SERVER WERE ALSO USED DURING REMARK 3 REFINEMENT OF THE MODEL. REMARK 4 REMARK 4 4JXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12196 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7596 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.93000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4HFG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-4000, 10% ISOPROPANOL, 0.1M REMARK 280 HEPES., PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.63200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.63200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.01350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.63200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.63200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.01350 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 46.63200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 46.63200 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 18.01350 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 46.63200 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 46.63200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 18.01350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 LYS A 133 REMARK 465 LYS A 134 REMARK 465 PRO A 135 REMARK 465 ARG A 136 REMARK 465 LYS A 137 REMARK 465 BTN B 1618 REMARK 465 SER B 1619 REMARK 465 PRO B 1631 REMARK 465 THR B 1632 REMARK 465 SER B 1633 REMARK 465 PRO B 1634 REMARK 465 SEP B 1635 REMARK 465 TYR B 1636 REMARK 465 SER B 1637 REMARK 465 NH2 B 1638 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 21 CD OE1 NE2 REMARK 470 ARG A 38 CD NE CZ NH1 NH2 REMARK 470 LYS A 50 CE NZ REMARK 470 LYS A 52 NZ REMARK 470 ARG A 72 NE CZ NH1 NH2 REMARK 470 LYS A 90 CD CE NZ REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 102 CD CE NZ REMARK 470 ASP A 132 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 71 UNK UNX A 203 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 120 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 33 31.34 -97.20 REMARK 500 TYR B1629 149.32 176.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF DNA-DIRECTED RNA REMARK 800 POLYMERASE II SUBUNIT RPB1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 BIOTIN (BTN) IS LINKED TO THE N TERMINUS OF THE SHORT PEPTIDE DBREF 4JXT A 1 137 UNP Q96P16 RPR1A_HUMAN 1 137 DBREF 4JXT B 1619 1637 UNP P24928 RPB1_HUMAN 1612 1630 SEQADV 4JXT GLY A 0 UNP Q96P16 EXPRESSION TAG SEQADV 4JXT BTN B 1618 UNP P24928 SEE REMARK 999 SEQADV 4JXT NH2 B 1638 UNP P24928 AMIDATION SEQRES 1 A 138 GLY MET SER ALA PHE SER GLU ALA ALA LEU GLU LYS LYS SEQRES 2 A 138 LEU SER GLU LEU SER ASN SER GLN GLN SER VAL GLN THR SEQRES 3 A 138 LEU SER LEU TRP LEU ILE HIS HIS ARG LYS HIS SER ARG SEQRES 4 A 138 PRO ILE VAL THR VAL TRP GLU ARG GLU LEU ARG LYS ALA SEQRES 5 A 138 LYS PRO ASN ARG LYS LEU THR PHE LEU TYR LEU ALA ASN SEQRES 6 A 138 ASP VAL ILE GLN ASN SER LYS ARG LYS GLY PRO GLU PHE SEQRES 7 A 138 THR LYS ASP PHE ALA PRO VAL ILE VAL GLU ALA PHE LYS SEQRES 8 A 138 HIS VAL SER SER GLU THR ASP GLU SER CYS LYS LYS HIS SEQRES 9 A 138 LEU GLY ARG VAL LEU SER ILE TRP GLU GLU ARG SER VAL SEQRES 10 A 138 TYR GLU ASN ASP VAL LEU GLU GLN LEU LYS GLN ALA LEU SEQRES 11 A 138 TYR GLY ASP LYS LYS PRO ARG LYS SEQRES 1 B 21 BTN SER PRO SEP TYR SER PRO THR SER PRO SEP TYR SER SEQRES 2 B 21 PRO THR SER PRO SEP TYR SER NH2 MODRES 4JXT SEP B 1621 SER PHOSPHOSERINE MODRES 4JXT SEP B 1628 SER PHOSPHOSERINE HET SEP B1621 10 HET SEP B1628 10 HET UNX A 201 1 HET UNX A 202 1 HET UNX A 203 1 HET UNX A 204 1 HET UNX A 205 1 HET UNX A 206 1 HETNAM SEP PHOSPHOSERINE HETNAM UNX UNKNOWN ATOM OR ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 2(C3 H8 N O6 P) FORMUL 3 UNX 6(X) FORMUL 9 HOH *87(H2 O) HELIX 1 1 SER A 5 LEU A 16 1 12 HELIX 2 2 SER A 19 HIS A 33 1 15 HELIX 3 3 HIS A 36 ALA A 51 1 16 HELIX 4 4 LYS A 52 ASN A 54 5 3 HELIX 5 5 ARG A 55 LYS A 71 1 17 HELIX 6 6 PRO A 75 THR A 96 1 22 HELIX 7 7 ASP A 97 ARG A 114 1 18 HELIX 8 8 GLU A 118 GLY A 131 1 14 LINK C PRO B1620 N SEP B1621 1555 1555 1.34 LINK C SEP B1621 N TYR B1622 1555 1555 1.33 LINK C PRO B1627 N SEP B1628 1555 1555 1.33 LINK C SEP B1628 N ATYR B1629 1555 1555 1.34 LINK C SEP B1628 N BTYR B1629 1555 1555 1.30 SITE 1 AC1 28 ASN A 18 SER A 19 GLN A 20 VAL A 23 SITE 2 AC1 28 ARG A 34 LYS A 35 TYR A 61 ASN A 64 SITE 3 AC1 28 ASP A 65 GLN A 68 LYS A 71 ARG A 72 SITE 4 AC1 28 LYS A 73 GLU A 76 ARG A 106 ILE A 110 SITE 5 AC1 28 ARG A 114 SER A 115 VAL A 116 HOH B1701 SITE 6 AC1 28 HOH B1702 HOH B1703 HOH B1704 HOH B1705 SITE 7 AC1 28 HOH B1706 HOH B1707 HOH B1708 HOH B1709 CRYST1 93.264 93.264 36.027 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027757 0.00000