PDB Short entry for 4JYI HEADER TRANSCRIPTION/AGONIST 29-MAR-13 4JYI TITLE CRYSTAL STRUCTURE OF RARBETA LBD IN COMPLEX WITH SELECTIVE PARTIAL TITLE 2 AGONIST BMS641 [3-CHLORO-4-[(E)-2-(5,5-DIMETHYL-8-PHENYL-5,6- TITLE 3 DIHYDRONAPHTHALEN-2-YL)ETHENYL]BENZOIC ACID] COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 176-421; COMPND 5 SYNONYM: RAR-BETA, HBV-ACTIVATED PROTEIN, NUCLEAR RECEPTOR SUBFAMILY COMPND 6 1 GROUP B MEMBER 2, RAR-EPSILON; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 10 CHAIN: F, G; COMPND 11 FRAGMENT: UNP RESIDUES 686-698; COMPND 12 SYNONYM: SRC-1; COMPND 13 EC: 2.3.1.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RARB, HAP, NR1B2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS LIGAND BINDING DOMAIN, NUCLEAR HORMONE RECEPTOR, TRANSCRIPTION- KEYWDS 2 AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.K.NADENDLA,C.TEYSSIER,P.GERMAIN,V.DELFOSSE,W.BOURGUET REVDAT 3 28-FEB-24 4JYI 1 REMARK SEQADV REVDAT 2 13-APR-16 4JYI 1 JRNL REVDAT 1 19-MAR-14 4JYI 0 JRNL AUTH E.NADENDLA,C.TEYSSIER,V.DELFOSSE,V.VIVAT,G.KRISHNASAMY, JRNL AUTH 2 H.GRONEMEYER,W.BOURGUET,P.GERMAIN JRNL TITL AN UNEXPECTED MODE OF BINDING DEFINES BMS948 AS A FULL JRNL TITL 2 RETINOIC ACID RECEPTOR BETA (RAR BETA , NR1B2) SELECTIVE JRNL TITL 3 AGONIST. JRNL REF PLOS ONE V. 10 23195 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25933005 JRNL DOI 10.1371/JOURNAL.PONE.0123195 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 42949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3020 - 4.6842 0.98 2883 151 0.1896 0.2108 REMARK 3 2 4.6842 - 3.7189 1.00 2799 148 0.1537 0.1762 REMARK 3 3 3.7189 - 3.2490 1.00 2763 145 0.1839 0.2384 REMARK 3 4 3.2490 - 2.9521 1.00 2753 145 0.1967 0.2213 REMARK 3 5 2.9521 - 2.7406 1.00 2751 145 0.2037 0.2368 REMARK 3 6 2.7406 - 2.5790 1.00 2729 144 0.2041 0.2089 REMARK 3 7 2.5790 - 2.4499 1.00 2712 142 0.2091 0.2489 REMARK 3 8 2.4499 - 2.3432 1.00 2705 143 0.2099 0.2279 REMARK 3 9 2.3432 - 2.2530 1.00 2730 143 0.2264 0.2672 REMARK 3 10 2.2530 - 2.1753 1.00 2699 142 0.2174 0.2642 REMARK 3 11 2.1753 - 2.1073 1.00 2718 143 0.2262 0.2763 REMARK 3 12 2.1073 - 2.0471 1.00 2720 144 0.2273 0.2481 REMARK 3 13 2.0471 - 1.9932 1.00 2695 142 0.2331 0.3020 REMARK 3 14 1.9932 - 1.9445 0.99 2662 140 0.2429 0.2535 REMARK 3 15 1.9445 - 1.9000 0.92 2483 130 0.2758 0.3150 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 53.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.37220 REMARK 3 B22 (A**2) : 6.89240 REMARK 3 B33 (A**2) : -0.52010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4109 REMARK 3 ANGLE : 0.895 5599 REMARK 3 CHIRALITY : 0.103 673 REMARK 3 PLANARITY : 0.004 707 REMARK 3 DIHEDRAL : 11.549 1586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : ASYMMETRIC LAUE 001 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM TRI SODIUM CITRATE PH 5.5, 25% REMARK 280 PEG 4000, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.64500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.64500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 SER A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 LEU A 161 REMARK 465 VAL A 162 REMARK 465 PRO A 163 REMARK 465 ARG A 164 REMARK 465 GLY A 165 REMARK 465 SER A 166 REMARK 465 HIS A 167 REMARK 465 MET A 168 REMARK 465 GLU A 169 REMARK 465 ASN A 409 REMARK 465 SER A 410 REMARK 465 GLU A 411 REMARK 465 GLY A 412 REMARK 465 HIS A 413 REMARK 465 GLU A 414 REMARK 465 MET B 148 REMARK 465 GLY B 149 REMARK 465 SER B 150 REMARK 465 SER B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 SER B 158 REMARK 465 SER B 159 REMARK 465 GLY B 160 REMARK 465 LEU B 161 REMARK 465 VAL B 162 REMARK 465 PRO B 163 REMARK 465 ARG B 164 REMARK 465 GLY B 165 REMARK 465 SER B 166 REMARK 465 HIS B 167 REMARK 465 MET B 168 REMARK 465 GLU B 169 REMARK 465 ASN B 409 REMARK 465 SER B 410 REMARK 465 GLU B 411 REMARK 465 GLY B 412 REMARK 465 HIS B 413 REMARK 465 GLU B 414 REMARK 465 ARG F 629 REMARK 465 GLU F 639 REMARK 465 GLY F 640 REMARK 465 SER F 641 REMARK 465 ARG G 629 REMARK 465 GLY G 640 REMARK 465 SER G 641 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 186 CD CE NZ REMARK 470 SER A 194 OG REMARK 470 GLN A 197 CG CD OE1 NE2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 SER A 362 OG REMARK 470 HIS A 365 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 ASP B 208 CG OD1 OD2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 GLN B 333 CG CD OE1 NE2 REMARK 470 LYS B 343 CG CD CE NZ REMARK 470 GLU B 346 CG CD OE1 OE2 REMARK 470 GLU B 350 CG CD OE1 OE2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 SER B 362 OG REMARK 470 LYS B 363 CE NZ REMARK 470 SER B 398 OG REMARK 470 GLN B 404 CG CD OE1 NE2 REMARK 470 GLU B 408 OE1 OE2 REMARK 470 LYS F 631 CG CD CE NZ REMARK 470 GLN F 638 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 758 O HOH F 703 1.66 REMARK 500 O HOH B 685 O HOH B 751 1.72 REMARK 500 O HOH A 694 O HOH A 810 1.79 REMARK 500 O HOH B 684 O HOH B 718 1.80 REMARK 500 O HOH A 676 O HOH A 780 1.81 REMARK 500 O HOH B 676 O HOH B 755 1.89 REMARK 500 O HOH A 714 O HOH A 764 1.89 REMARK 500 O HOH A 770 O HOH A 855 1.89 REMARK 500 O HOH A 672 O HOH A 717 1.90 REMARK 500 O HOH A 820 O HOH A 845 1.91 REMARK 500 O HOH A 747 O HOH A 856 1.92 REMARK 500 O HOH B 625 O HOH B 737 1.94 REMARK 500 O HOH B 602 O HOH B 735 1.99 REMARK 500 O HOH A 741 O HOH A 742 2.00 REMARK 500 O HOH A 791 O HOH B 688 2.00 REMARK 500 O HOH A 679 O HOH A 861 2.00 REMARK 500 O HOH B 653 O HOH B 710 2.06 REMARK 500 O HOH B 626 O HOH B 732 2.07 REMARK 500 O HOH A 699 O HOH A 815 2.10 REMARK 500 O HOH F 704 O HOH F 705 2.14 REMARK 500 O HOH A 757 O HOH A 790 2.15 REMARK 500 O HOH B 738 O HOH B 759 2.16 REMARK 500 O HOH A 834 O HOH A 860 2.19 REMARK 500 O HOH A 727 O HOH A 816 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 674 O HOH B 745 3654 1.72 REMARK 500 O HOH A 724 O HOH B 727 2555 2.14 REMARK 500 O HOH A 771 O HOH G 805 4455 2.16 REMARK 500 O HOH A 695 O HOH B 755 3544 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 206 72.94 27.37 REMARK 500 HIS A 365 43.54 -101.11 REMARK 500 LYS B 363 61.96 -155.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JYI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JYI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC G 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XAP RELATED DB: PDB REMARK 900 RELATED ID: 4DM8 RELATED DB: PDB REMARK 900 RELATED ID: 4DM6 RELATED DB: PDB REMARK 900 RELATED ID: 4JYG RELATED DB: PDB REMARK 900 RELATED ID: 4JYH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 LEU 414 TO MET CONFLICT IN UNP ENTRY P10826 DBREF 4JYI A 169 414 UNP P10826 RARB_HUMAN 176 421 DBREF 4JYI B 169 414 UNP P10826 RARB_HUMAN 176 421 DBREF 4JYI F 629 641 UNP Q15788 NCOA1_HUMAN 686 698 DBREF 4JYI G 629 641 UNP Q15788 NCOA1_HUMAN 686 698 SEQADV 4JYI MET A 148 UNP P10826 EXPRESSION TAG SEQADV 4JYI GLY A 149 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER A 150 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER A 151 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS A 152 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS A 153 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS A 154 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS A 155 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS A 156 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS A 157 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER A 158 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER A 159 UNP P10826 EXPRESSION TAG SEQADV 4JYI GLY A 160 UNP P10826 EXPRESSION TAG SEQADV 4JYI LEU A 161 UNP P10826 EXPRESSION TAG SEQADV 4JYI VAL A 162 UNP P10826 EXPRESSION TAG SEQADV 4JYI PRO A 163 UNP P10826 EXPRESSION TAG SEQADV 4JYI ARG A 164 UNP P10826 EXPRESSION TAG SEQADV 4JYI GLY A 165 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER A 166 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS A 167 UNP P10826 EXPRESSION TAG SEQADV 4JYI MET A 168 UNP P10826 EXPRESSION TAG SEQADV 4JYI MET A 407 UNP P10826 LEU 414 SEE REMARK 999 SEQADV 4JYI MET B 148 UNP P10826 EXPRESSION TAG SEQADV 4JYI GLY B 149 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER B 150 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER B 151 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS B 152 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS B 153 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS B 154 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS B 155 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS B 156 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS B 157 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER B 158 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER B 159 UNP P10826 EXPRESSION TAG SEQADV 4JYI GLY B 160 UNP P10826 EXPRESSION TAG SEQADV 4JYI LEU B 161 UNP P10826 EXPRESSION TAG SEQADV 4JYI VAL B 162 UNP P10826 EXPRESSION TAG SEQADV 4JYI PRO B 163 UNP P10826 EXPRESSION TAG SEQADV 4JYI ARG B 164 UNP P10826 EXPRESSION TAG SEQADV 4JYI GLY B 165 UNP P10826 EXPRESSION TAG SEQADV 4JYI SER B 166 UNP P10826 EXPRESSION TAG SEQADV 4JYI HIS B 167 UNP P10826 EXPRESSION TAG SEQADV 4JYI MET B 168 UNP P10826 EXPRESSION TAG SEQADV 4JYI MET B 407 UNP P10826 LEU 414 SEE REMARK 999 SEQRES 1 A 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 267 LEU VAL PRO ARG GLY SER HIS MET GLU SER TYR GLU MET SEQRES 3 A 267 THR ALA GLU LEU ASP ASP LEU THR GLU LYS ILE ARG LYS SEQRES 4 A 267 ALA HIS GLN GLU THR PHE PRO SER LEU CYS GLN LEU GLY SEQRES 5 A 267 LYS TYR THR THR ASN SER SER ALA ASP HIS ARG VAL ARG SEQRES 6 A 267 LEU ASP LEU GLY LEU TRP ASP LYS PHE SER GLU LEU ALA SEQRES 7 A 267 THR LYS CYS ILE ILE LYS ILE VAL GLU PHE ALA LYS ARG SEQRES 8 A 267 LEU PRO GLY PHE THR GLY LEU THR ILE ALA ASP GLN ILE SEQRES 9 A 267 THR LEU LEU LYS ALA ALA CYS LEU ASP ILE LEU ILE LEU SEQRES 10 A 267 ARG ILE CYS THR ARG TYR THR PRO GLU GLN ASP THR MET SEQRES 11 A 267 THR PHE SER ASP GLY LEU THR LEU ASN ARG THR GLN MET SEQRES 12 A 267 HIS ASN ALA GLY PHE GLY PRO LEU THR ASP LEU VAL PHE SEQRES 13 A 267 THR PHE ALA ASN GLN LEU LEU PRO LEU GLU MET ASP ASP SEQRES 14 A 267 THR GLU THR GLY LEU LEU SER ALA ILE CYS LEU ILE CYS SEQRES 15 A 267 GLY ASP ARG GLN ASP LEU GLU GLU PRO THR LYS VAL ASP SEQRES 16 A 267 LYS LEU GLN GLU PRO LEU LEU GLU ALA LEU LYS ILE TYR SEQRES 17 A 267 ILE ARG LYS ARG ARG PRO SER LYS PRO HIS MET PHE PRO SEQRES 18 A 267 LYS ILE LEU MET LYS ILE THR ASP LEU ARG SER ILE SER SEQRES 19 A 267 ALA LYS GLY ALA GLU ARG VAL ILE THR LEU LYS MET GLU SEQRES 20 A 267 ILE PRO GLY SER MET PRO PRO LEU ILE GLN GLU MET MET SEQRES 21 A 267 GLU ASN SER GLU GLY HIS GLU SEQRES 1 B 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 267 LEU VAL PRO ARG GLY SER HIS MET GLU SER TYR GLU MET SEQRES 3 B 267 THR ALA GLU LEU ASP ASP LEU THR GLU LYS ILE ARG LYS SEQRES 4 B 267 ALA HIS GLN GLU THR PHE PRO SER LEU CYS GLN LEU GLY SEQRES 5 B 267 LYS TYR THR THR ASN SER SER ALA ASP HIS ARG VAL ARG SEQRES 6 B 267 LEU ASP LEU GLY LEU TRP ASP LYS PHE SER GLU LEU ALA SEQRES 7 B 267 THR LYS CYS ILE ILE LYS ILE VAL GLU PHE ALA LYS ARG SEQRES 8 B 267 LEU PRO GLY PHE THR GLY LEU THR ILE ALA ASP GLN ILE SEQRES 9 B 267 THR LEU LEU LYS ALA ALA CYS LEU ASP ILE LEU ILE LEU SEQRES 10 B 267 ARG ILE CYS THR ARG TYR THR PRO GLU GLN ASP THR MET SEQRES 11 B 267 THR PHE SER ASP GLY LEU THR LEU ASN ARG THR GLN MET SEQRES 12 B 267 HIS ASN ALA GLY PHE GLY PRO LEU THR ASP LEU VAL PHE SEQRES 13 B 267 THR PHE ALA ASN GLN LEU LEU PRO LEU GLU MET ASP ASP SEQRES 14 B 267 THR GLU THR GLY LEU LEU SER ALA ILE CYS LEU ILE CYS SEQRES 15 B 267 GLY ASP ARG GLN ASP LEU GLU GLU PRO THR LYS VAL ASP SEQRES 16 B 267 LYS LEU GLN GLU PRO LEU LEU GLU ALA LEU LYS ILE TYR SEQRES 17 B 267 ILE ARG LYS ARG ARG PRO SER LYS PRO HIS MET PHE PRO SEQRES 18 B 267 LYS ILE LEU MET LYS ILE THR ASP LEU ARG SER ILE SER SEQRES 19 B 267 ALA LYS GLY ALA GLU ARG VAL ILE THR LEU LYS MET GLU SEQRES 20 B 267 ILE PRO GLY SER MET PRO PRO LEU ILE GLN GLU MET MET SEQRES 21 B 267 GLU ASN SER GLU GLY HIS GLU SEQRES 1 F 13 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER SEQRES 1 G 13 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER HET JYI A 501 30 HET JYI B 501 30 HET FLC G 701 13 HETNAM JYI 3-CHLORO-4-[(E)-2-(5,5-DIMETHYL-8-PHENYL-5,6- HETNAM 2 JYI DIHYDRONAPHTHALEN-2-YL)ETHENYL]BENZOIC ACID HETNAM FLC CITRATE ANION FORMUL 5 JYI 2(C27 H23 CL O2) FORMUL 7 FLC C6 H5 O7 3- FORMUL 8 HOH *443(H2 O) HELIX 1 1 TYR A 171 GLU A 190 1 20 HELIX 2 2 SER A 194 LEU A 198 5 5 HELIX 3 3 ASP A 214 ARG A 238 1 25 HELIX 4 4 GLY A 241 LEU A 245 5 5 HELIX 5 5 THR A 246 THR A 268 1 23 HELIX 6 6 ARG A 287 GLY A 294 1 8 HELIX 7 7 PHE A 295 PRO A 297 5 3 HELIX 8 8 LEU A 298 LEU A 310 1 13 HELIX 9 9 PRO A 311 GLU A 313 5 3 HELIX 10 10 ASP A 315 ILE A 328 1 14 HELIX 11 11 GLU A 337 ARG A 360 1 24 HELIX 12 12 HIS A 365 MET A 372 1 8 HELIX 13 13 MET A 372 MET A 393 1 22 HELIX 14 14 PRO A 400 GLU A 408 1 9 HELIX 15 15 THR B 174 GLU B 190 1 17 HELIX 16 16 SER B 194 LEU B 198 5 5 HELIX 17 17 ASP B 214 ARG B 238 1 25 HELIX 18 18 GLY B 241 LEU B 245 5 5 HELIX 19 19 THR B 246 THR B 268 1 23 HELIX 20 20 ARG B 287 GLY B 294 1 8 HELIX 21 21 PHE B 295 PRO B 297 5 3 HELIX 22 22 LEU B 298 LEU B 310 1 13 HELIX 23 23 PRO B 311 GLU B 313 5 3 HELIX 24 24 ASP B 315 ILE B 328 1 14 HELIX 25 25 GLU B 337 ARG B 360 1 24 HELIX 26 26 HIS B 365 MET B 372 1 8 HELIX 27 27 MET B 372 ILE B 395 1 24 HELIX 28 28 PRO B 400 GLU B 408 1 9 HELIX 29 29 LYS F 631 GLN F 638 1 8 HELIX 30 30 LYS G 631 GLU G 639 1 9 SHEET 1 A 3 TYR A 270 THR A 271 0 SHEET 2 A 3 THR A 276 THR A 278 -1 O THR A 276 N THR A 271 SHEET 3 A 3 THR A 284 ASN A 286 -1 O LEU A 285 N MET A 277 SHEET 1 B 3 TYR B 270 THR B 271 0 SHEET 2 B 3 THR B 276 THR B 278 -1 O THR B 276 N THR B 271 SHEET 3 B 3 THR B 284 ASN B 286 -1 O LEU B 285 N MET B 277 SITE 1 AC1 13 PHE A 192 PHE A 221 ALA A 225 CYS A 228 SITE 2 AC1 13 LEU A 259 LEU A 262 ARG A 269 PHE A 279 SITE 3 AC1 13 SER A 280 PHE A 295 GLY A 384 ILE A 403 SITE 4 AC1 13 HOH A 621 SITE 1 AC2 14 PHE B 192 PHE B 221 ALA B 225 CYS B 228 SITE 2 AC2 14 LEU B 262 ILE B 266 ARG B 269 PHE B 279 SITE 3 AC2 14 SER B 280 PHE B 295 GLY B 384 VAL B 388 SITE 4 AC2 14 LEU B 391 HOH B 643 SITE 1 AC3 12 GLU A 337 PRO A 338 THR A 339 PRO A 401 SITE 2 AC3 12 HOH A 691 HOH A 723 HIS G 630 LYS G 631 SITE 3 AC3 12 ILE G 632 ARG G 635 HOH G 811 HOH G 813 CRYST1 58.520 84.240 109.290 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009150 0.00000