PDB Short entry for 4K9T HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 21-APR-13 4K9T TITLE COMPLEX OF CYP3A4 WITH A DESOXYRITONAVIR ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 3A4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,8-CINEOLE 2-EXO-MONOOXYGENASE, ALBENDAZOLE MONOOXYGENASE, COMPND 5 ALBENDAZOLE SULFOXIDASE, CYPIIIA3, CYPIIIA4, CYTOCHROME P450 3A3, COMPND 6 CYTOCHROME P450 HLP, CYTOCHROME P450 NF-25, CYTOCHROME P450-PCN1, COMPND 7 NIFEDIPINE OXIDASE, QUININE 3-MONOOXYGENASE, TAUROCHENODEOXYCHOLATE COMPND 8 6-ALPHA-HYDROXYLASE; COMPND 9 EC: 1.14.13.-, 1.14.13.157, 1.14.13.32, 1.14.13.67, 1.14.13.97; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYP3A3, CYP3A4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PCWORI KEYWDS CYTOCHROME P450 3A4, ALPHA-BETA PROTEIN, CYTOCHROME P450 FOLD, KEYWDS 2 MONOOXYGENASE, CYTOCHROME P450 REDUCTASE, ENDOPLASMIC RETICULUM, KEYWDS 3 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.F.SEVRIOUKOVA,T.L.POULOS REVDAT 6 20-SEP-23 4K9T 1 REMARK SEQADV REVDAT 5 25-OCT-17 4K9T 1 REMARK REVDAT 4 29-OCT-14 4K9T 1 AUTHOR REVDAT 3 17-JUL-13 4K9T 1 JRNL REVDAT 2 26-JUN-13 4K9T 1 JRNL REVDAT 1 19-JUN-13 4K9T 0 JRNL AUTH I.F.SEVRIOUKOVA,T.L.POULOS JRNL TITL DISSECTING CYTOCHROME P450 3A4-LIGAND INTERACTIONS USING JRNL TITL 2 RITONAVIR ANALOGUES. JRNL REF BIOCHEMISTRY V. 52 4474 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23746300 JRNL DOI 10.1021/BI4005396 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 16498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3660 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.941 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.349 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.009 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3870 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5246 ; 1.987 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 6.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;36.010 ;23.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;19.629 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2885 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 497 REMARK 3 RESIDUE RANGE : A 601 A 603 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3935 23.8148 -13.6591 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.1831 REMARK 3 T33: 0.0966 T12: -0.0296 REMARK 3 T13: -0.0135 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 1.9089 L22: 3.5720 REMARK 3 L33: 1.6282 L12: -1.2555 REMARK 3 L13: 0.5892 L23: -0.9989 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: 0.1785 S13: 0.1740 REMARK 3 S21: 0.3535 S22: -0.0340 S23: 0.2398 REMARK 3 S31: -0.2625 S32: 0.0096 S33: 0.1300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4K9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17384 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 61.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NXU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM MALONATE, PH 5.9, REMARK 280 MICTOBATCH UNDER OIL, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.40500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.06500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.40500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.06500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.75000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.40500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.06500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.75000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.40500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMERIC ASSEMBLY CONFIRMED BY GEL FILTRATION (REFERENCE: REMARK 300 SEVRIOUKOVA I.F. AND POULOS T.L., PNAS 2010, 107, 18422-18427) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 TYR A 23 REMARK 465 LEU A 24 REMARK 465 TYR A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 HIS A 28 REMARK 465 GLN A 265 REMARK 465 LYS A 266 REMARK 465 HIS A 267 REMARK 465 ARG A 268 REMARK 465 VAL A 269 REMARK 465 ASN A 280 REMARK 465 SER A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 THR A 284 REMARK 465 GLU A 285 REMARK 465 SER A 286 REMARK 465 HIS A 287 REMARK 465 LYS A 288 REMARK 465 GLY A 498 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 SER A 501 REMARK 465 GLY A 502 REMARK 465 ALA A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 46 -49.13 67.28 REMARK 500 VAL A 101 -53.54 -138.06 REMARK 500 PHE A 102 68.43 -108.81 REMARK 500 ASP A 123 -117.45 53.50 REMARK 500 PRO A 169 137.16 -34.08 REMARK 500 SER A 195 -110.83 57.80 REMARK 500 LEU A 196 -49.68 -27.98 REMARK 500 ASN A 197 38.47 -95.04 REMARK 500 ASN A 198 39.97 -171.05 REMARK 500 PRO A 199 10.30 -56.07 REMARK 500 ASP A 201 123.87 -39.52 REMARK 500 LEU A 210 68.09 -57.96 REMARK 500 LEU A 211 111.49 91.41 REMARK 500 ARG A 212 86.21 -63.89 REMARK 500 GLU A 258 -76.57 -81.25 REMARK 500 ASP A 263 -70.72 -103.70 REMARK 500 PHE A 271 -54.77 -28.54 REMARK 500 MET A 371 -49.18 72.45 REMARK 500 ASN A 384 24.69 43.52 REMARK 500 ARG A 418 -35.30 -34.41 REMARK 500 THR A 433 54.47 -147.82 REMARK 500 CYS A 468 -159.70 -155.08 REMARK 500 SER A 478 143.37 -38.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 442 SG REMARK 620 2 HEM A 601 NA 112.6 REMARK 620 3 HEM A 601 NB 90.8 86.4 REMARK 620 4 HEM A 601 NC 99.0 148.1 89.0 REMARK 620 5 HEM A 601 ND 105.8 86.3 163.4 89.3 REMARK 620 6 1RD A 602 N28 166.0 79.5 82.6 68.6 81.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1RD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1RD A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NXU RELATED DB: PDB REMARK 900 RELATED ID: 4I4G RELATED DB: PDB REMARK 900 RELATED ID: 4I4H RELATED DB: PDB REMARK 900 RELATED ID: 4K9U RELATED DB: PDB REMARK 900 RELATED ID: 4K9V RELATED DB: PDB REMARK 900 RELATED ID: 4K9W RELATED DB: PDB REMARK 900 RELATED ID: 4K9X RELATED DB: PDB DBREF 4K9T A 21 503 UNP P08684 CP3A4_HUMAN 1 503 SEQADV 4K9T A UNP P08684 LEU 3 DELETION SEQADV 4K9T A UNP P08684 ILE 4 DELETION SEQADV 4K9T A UNP P08684 PRO 5 DELETION SEQADV 4K9T A UNP P08684 ASP 6 DELETION SEQADV 4K9T A UNP P08684 LEU 7 DELETION SEQADV 4K9T A UNP P08684 ALA 8 DELETION SEQADV 4K9T A UNP P08684 MET 9 DELETION SEQADV 4K9T A UNP P08684 GLU 10 DELETION SEQADV 4K9T A UNP P08684 THR 11 DELETION SEQADV 4K9T A UNP P08684 TRP 12 DELETION SEQADV 4K9T A UNP P08684 LEU 13 DELETION SEQADV 4K9T A UNP P08684 LEU 14 DELETION SEQADV 4K9T A UNP P08684 LEU 15 DELETION SEQADV 4K9T A UNP P08684 ALA 16 DELETION SEQADV 4K9T A UNP P08684 VAL 17 DELETION SEQADV 4K9T A UNP P08684 SER 18 DELETION SEQADV 4K9T A UNP P08684 LEU 19 DELETION SEQADV 4K9T A UNP P08684 VAL 20 DELETION SEQADV 4K9T A UNP P08684 LEU 21 DELETION SEQADV 4K9T A UNP P08684 LEU 22 DELETION SEQADV 4K9T HIS A 504 UNP P08684 EXPRESSION TAG SEQADV 4K9T HIS A 505 UNP P08684 EXPRESSION TAG SEQADV 4K9T HIS A 506 UNP P08684 EXPRESSION TAG SEQADV 4K9T HIS A 507 UNP P08684 EXPRESSION TAG SEQRES 1 A 487 MET ALA TYR LEU TYR GLY THR HIS SER HIS GLY LEU PHE SEQRES 2 A 487 LYS LYS LEU GLY ILE PRO GLY PRO THR PRO LEU PRO PHE SEQRES 3 A 487 LEU GLY ASN ILE LEU SER TYR HIS LYS GLY PHE CYS MET SEQRES 4 A 487 PHE ASP MET GLU CYS HIS LYS LYS TYR GLY LYS VAL TRP SEQRES 5 A 487 GLY PHE TYR ASP GLY GLN GLN PRO VAL LEU ALA ILE THR SEQRES 6 A 487 ASP PRO ASP MET ILE LYS THR VAL LEU VAL LYS GLU CYS SEQRES 7 A 487 TYR SER VAL PHE THR ASN ARG ARG PRO PHE GLY PRO VAL SEQRES 8 A 487 GLY PHE MET LYS SER ALA ILE SER ILE ALA GLU ASP GLU SEQRES 9 A 487 GLU TRP LYS ARG LEU ARG SER LEU LEU SER PRO THR PHE SEQRES 10 A 487 THR SER GLY LYS LEU LYS GLU MET VAL PRO ILE ILE ALA SEQRES 11 A 487 GLN TYR GLY ASP VAL LEU VAL ARG ASN LEU ARG ARG GLU SEQRES 12 A 487 ALA GLU THR GLY LYS PRO VAL THR LEU LYS ASP VAL PHE SEQRES 13 A 487 GLY ALA TYR SER MET ASP VAL ILE THR SER THR SER PHE SEQRES 14 A 487 GLY VAL ASN ILE ASP SER LEU ASN ASN PRO GLN ASP PRO SEQRES 15 A 487 PHE VAL GLU ASN THR LYS LYS LEU LEU ARG PHE ASP PHE SEQRES 16 A 487 LEU ASP PRO PHE PHE LEU SER ILE THR VAL PHE PRO PHE SEQRES 17 A 487 LEU ILE PRO ILE LEU GLU VAL LEU ASN ILE CYS VAL PHE SEQRES 18 A 487 PRO ARG GLU VAL THR ASN PHE LEU ARG LYS SER VAL LYS SEQRES 19 A 487 ARG MET LYS GLU SER ARG LEU GLU ASP THR GLN LYS HIS SEQRES 20 A 487 ARG VAL ASP PHE LEU GLN LEU MET ILE ASP SER GLN ASN SEQRES 21 A 487 SER LYS GLU THR GLU SER HIS LYS ALA LEU SER ASP LEU SEQRES 22 A 487 GLU LEU VAL ALA GLN SER ILE ILE PHE ILE PHE ALA GLY SEQRES 23 A 487 TYR GLU THR THR SER SER VAL LEU SER PHE ILE MET TYR SEQRES 24 A 487 GLU LEU ALA THR HIS PRO ASP VAL GLN GLN LYS LEU GLN SEQRES 25 A 487 GLU GLU ILE ASP ALA VAL LEU PRO ASN LYS ALA PRO PRO SEQRES 26 A 487 THR TYR ASP THR VAL LEU GLN MET GLU TYR LEU ASP MET SEQRES 27 A 487 VAL VAL ASN GLU THR LEU ARG LEU PHE PRO ILE ALA MET SEQRES 28 A 487 ARG LEU GLU ARG VAL CYS LYS LYS ASP VAL GLU ILE ASN SEQRES 29 A 487 GLY MET PHE ILE PRO LYS GLY VAL VAL VAL MET ILE PRO SEQRES 30 A 487 SER TYR ALA LEU HIS ARG ASP PRO LYS TYR TRP THR GLU SEQRES 31 A 487 PRO GLU LYS PHE LEU PRO GLU ARG PHE SER LYS LYS ASN SEQRES 32 A 487 LYS ASP ASN ILE ASP PRO TYR ILE TYR THR PRO PHE GLY SEQRES 33 A 487 SER GLY PRO ARG ASN CYS ILE GLY MET ARG PHE ALA LEU SEQRES 34 A 487 MET ASN MET LYS LEU ALA LEU ILE ARG VAL LEU GLN ASN SEQRES 35 A 487 PHE SER PHE LYS PRO CYS LYS GLU THR GLN ILE PRO LEU SEQRES 36 A 487 LYS LEU SER LEU GLY GLY LEU LEU GLN PRO GLU LYS PRO SEQRES 37 A 487 VAL VAL LEU LYS VAL GLU SER ARG ASP GLY THR VAL SER SEQRES 38 A 487 GLY ALA HIS HIS HIS HIS HET HEM A 601 43 HET 1RD A 602 35 HET 1RD A 603 35 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 1RD N~2~-(METHYL{[2-(PROPAN-2-YL)-1,3-THIAZOL-4- HETNAM 2 1RD YL]METHYL}CARBAMOYL)-N-(4-{[(1,3-THIAZOL-5-YLMETHOXY) HETNAM 3 1RD CARBONYL]AMINO}BUTYL)-L-VALINAMIDE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 1RD 2(C23 H36 N6 O4 S2) FORMUL 5 HOH *31(H2 O) HELIX 1 1 GLY A 31 LEU A 36 1 6 HELIX 2 2 ASN A 49 HIS A 54 5 6 HELIX 3 3 LYS A 55 GLY A 69 1 15 HELIX 4 4 ASP A 86 VAL A 95 1 10 HELIX 5 5 VAL A 111 ALA A 117 5 7 HELIX 6 6 GLU A 122 SER A 134 1 13 HELIX 7 7 PRO A 135 PHE A 137 5 3 HELIX 8 8 THR A 138 GLU A 163 1 26 HELIX 9 9 LEU A 172 GLY A 190 1 19 HELIX 10 10 ASP A 194 ASN A 198 5 5 HELIX 11 11 ASP A 201 THR A 207 1 7 HELIX 12 12 PRO A 218 PHE A 226 1 9 HELIX 13 13 LEU A 229 LEU A 236 1 8 HELIX 14 14 PRO A 242 GLU A 258 1 17 HELIX 15 15 PHE A 271 SER A 278 1 8 HELIX 16 16 SER A 291 THR A 323 1 33 HELIX 17 17 HIS A 324 LEU A 339 1 16 HELIX 18 18 THR A 346 MET A 353 1 8 HELIX 19 19 MET A 353 PHE A 367 1 15 HELIX 20 20 PRO A 397 ARG A 403 1 7 HELIX 21 21 LEU A 415 SER A 420 5 6 HELIX 22 22 ASN A 423 ILE A 427 5 5 HELIX 23 23 SER A 437 ASN A 441 5 5 HELIX 24 24 GLY A 444 ASN A 462 1 19 SHEET 1 A 4 VAL A 71 ASP A 76 0 SHEET 2 A 4 GLN A 79 ILE A 84 -1 O VAL A 81 N PHE A 74 SHEET 3 A 4 VAL A 393 ILE A 396 1 O VAL A 393 N LEU A 82 SHEET 4 A 4 LEU A 373 VAL A 376 -1 N ARG A 375 O VAL A 394 SHEET 1 B 3 VAL A 170 THR A 171 0 SHEET 2 B 3 VAL A 490 SER A 495 -1 O LEU A 491 N VAL A 170 SHEET 3 B 3 PHE A 463 LYS A 466 -1 N LYS A 466 O LYS A 492 SHEET 1 C 2 VAL A 381 ILE A 383 0 SHEET 2 C 2 MET A 386 ILE A 388 -1 O ILE A 388 N VAL A 381 LINK SG CYS A 442 FE HEM A 601 1555 1555 2.12 LINK FE HEM A 601 N28 1RD A 602 1555 1555 2.17 CISPEP 1 LEU A 211 ARG A 212 0 8.57 CISPEP 2 ILE A 473 PRO A 474 0 -6.34 SITE 1 AC1 23 ARG A 105 ILE A 118 SER A 119 TRP A 126 SITE 2 AC1 23 ARG A 130 ILE A 301 ALA A 305 THR A 309 SITE 3 AC1 23 ILE A 369 ALA A 370 ARG A 375 PRO A 434 SITE 4 AC1 23 PHE A 435 GLY A 436 SER A 437 ARG A 440 SITE 5 AC1 23 ASN A 441 CYS A 442 ILE A 443 GLY A 444 SITE 6 AC1 23 PHE A 447 MET A 452 1RD A 602 SITE 1 AC2 12 TYR A 53 PHE A 57 ASP A 76 PHE A 108 SITE 2 AC2 12 PHE A 215 LEU A 216 PHE A 220 THR A 224 SITE 3 AC2 12 ALA A 305 THR A 309 HEM A 601 1RD A 603 SITE 1 AC3 12 ARG A 105 ARG A 106 PRO A 107 PHE A 108 SITE 2 AC3 12 PHE A 215 VAL A 240 PHE A 241 PHE A 304 SITE 3 AC3 12 ALA A 370 ARG A 372 GLU A 374 1RD A 602 CRYST1 77.500 100.810 130.130 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007685 0.00000