PDB Short entry for 4KHY HEADER TRANSFERASE/DNA 01-MAY-13 4KHY TITLE TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDE AT -3 TITLE 2 POSITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP43; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA/RNA (5'-D(*AP*CP*AP*GP*G)-R(P*U)- COMPND 10 D(P*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: TEMPLATE STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'); COMPND 16 CHAIN: P; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: PRIMER STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB69; SOURCE 3 ORGANISM_TAXID: 12353; SOURCE 4 GENE: 43; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS RIBONUCLEOTIDE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.CLAUSEN,L.C.PEDERSEN REVDAT 3 20-SEP-23 4KHY 1 REMARK SEQADV LINK REVDAT 2 30-OCT-13 4KHY 1 JRNL REVDAT 1 09-OCT-13 4KHY 0 JRNL AUTH A.R.CLAUSEN,M.S.MURRAY,A.R.PASSER,L.C.PEDERSEN,T.A.KUNKEL JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF RIBONUCLEOTIDE BYPASS BY B JRNL TITL 2 FAMILY DNA REPLICASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 16802 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 24082122 JRNL DOI 10.1073/PNAS.1309119110 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 3 NUMBER OF REFLECTIONS : 50172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.3463 - 5.8589 0.99 3294 153 0.1874 0.2181 REMARK 3 2 5.8589 - 4.6642 0.97 3092 176 0.1503 0.1946 REMARK 3 3 4.6642 - 4.0787 0.97 3015 163 0.1346 0.1669 REMARK 3 4 4.0787 - 3.7076 0.96 3025 153 0.1601 0.1972 REMARK 3 5 3.7076 - 3.4429 1.00 3117 162 0.1872 0.2389 REMARK 3 6 3.4429 - 3.2406 1.00 3077 173 0.2063 0.2313 REMARK 3 7 3.2406 - 3.0787 0.95 2946 135 0.2284 0.2851 REMARK 3 8 3.0787 - 2.9450 0.83 2576 126 0.2358 0.2596 REMARK 3 9 2.9450 - 2.8319 0.78 2420 121 0.2555 0.2941 REMARK 3 10 2.8319 - 2.7343 0.76 2312 129 0.2687 0.2781 REMARK 3 11 2.7343 - 2.6490 0.77 2351 129 0.2676 0.3741 REMARK 3 12 2.6490 - 2.5734 0.79 2392 140 0.2664 0.2947 REMARK 3 13 2.5734 - 2.5057 0.77 2369 134 0.2713 0.3636 REMARK 3 14 2.5057 - 2.4446 0.77 2374 111 0.2670 0.3327 REMARK 3 15 2.4446 - 2.3891 0.75 2326 110 0.2653 0.3600 REMARK 3 16 2.3891 - 2.3383 0.81 2473 146 0.2517 0.3195 REMARK 3 17 2.3383 - 2.2916 0.79 2417 125 0.2469 0.3803 REMARK 3 18 2.2916 - 2.2480 0.69 2105 105 0.2673 0.3324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 41.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.60920 REMARK 3 B22 (A**2) : -0.99880 REMARK 3 B33 (A**2) : 4.60800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8329 REMARK 3 ANGLE : 0.805 11472 REMARK 3 CHIRALITY : 0.053 1214 REMARK 3 PLANARITY : 0.003 1376 REMARK 3 DIHEDRAL : 11.433 2795 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:108) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8060 60.6462 33.3393 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1704 REMARK 3 T33: 0.5109 T12: -0.0062 REMARK 3 T13: 0.0365 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 0.1484 L22: 0.2410 REMARK 3 L33: 0.0443 L12: 0.1756 REMARK 3 L13: -0.0443 L23: -0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0044 S13: 0.1606 REMARK 3 S21: 0.0000 S22: -0.0550 S23: -0.2941 REMARK 3 S31: -0.0454 S32: 0.0386 S33: 0.0150 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 109:235) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1333 33.2293 54.8009 REMARK 3 T TENSOR REMARK 3 T11: 0.2993 T22: 0.1921 REMARK 3 T33: 0.2141 T12: -0.0179 REMARK 3 T13: -0.0589 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1872 L22: 0.4715 REMARK 3 L33: 0.4610 L12: -0.0278 REMARK 3 L13: -0.0747 L23: 0.3350 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.0051 S13: -0.0666 REMARK 3 S21: 0.3588 S22: -0.1268 S23: -0.1619 REMARK 3 S31: 0.1477 S32: 0.0274 S33: 0.0211 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 236:301) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3486 43.6637 43.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.2060 REMARK 3 T33: 0.2072 T12: -0.0046 REMARK 3 T13: -0.0307 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.1528 L22: 0.3476 REMARK 3 L33: 0.1585 L12: 0.0534 REMARK 3 L13: -0.0284 L23: 0.0422 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -0.1335 S13: 0.0707 REMARK 3 S21: -0.0040 S22: -0.0623 S23: -0.1276 REMARK 3 S31: -0.0329 S32: -0.0325 S33: 0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 302:323) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0314 26.0928 56.3054 REMARK 3 T TENSOR REMARK 3 T11: 0.4505 T22: 0.2571 REMARK 3 T33: 0.1994 T12: -0.0679 REMARK 3 T13: 0.0341 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.2989 L22: 0.0648 REMARK 3 L33: 0.0976 L12: -0.0172 REMARK 3 L13: -0.1692 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.0188 S13: 0.0095 REMARK 3 S21: 0.0199 S22: -0.0028 S23: 0.0184 REMARK 3 S31: -0.0554 S32: -0.0459 S33: -0.0063 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 324:466) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6362 53.9721 18.2183 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: -0.0809 REMARK 3 T33: -0.1627 T12: -0.0145 REMARK 3 T13: 0.0885 T23: 0.2768 REMARK 3 L TENSOR REMARK 3 L11: 0.1574 L22: 0.0621 REMARK 3 L33: 0.2979 L12: -0.0439 REMARK 3 L13: 0.0761 L23: 0.0417 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: 0.0656 S13: 0.1369 REMARK 3 S21: -0.1026 S22: 0.1097 S23: -0.2248 REMARK 3 S31: 0.1915 S32: 0.0482 S33: 0.3503 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 467:539) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1105 27.0144 15.5318 REMARK 3 T TENSOR REMARK 3 T11: 0.6960 T22: 0.2972 REMARK 3 T33: 0.3283 T12: 0.1399 REMARK 3 T13: 0.0532 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 0.3908 L22: 0.0612 REMARK 3 L33: 0.2169 L12: -0.0520 REMARK 3 L13: 0.1495 L23: 0.0740 REMARK 3 S TENSOR REMARK 3 S11: 0.1434 S12: 0.1808 S13: -0.1863 REMARK 3 S21: -0.0177 S22: -0.0932 S23: -0.0196 REMARK 3 S31: 0.4314 S32: 0.0958 S33: -0.0024 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 540:682) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6804 45.4505 7.0578 REMARK 3 T TENSOR REMARK 3 T11: 0.5143 T22: 0.2950 REMARK 3 T33: 0.0472 T12: 0.0236 REMARK 3 T13: 0.0028 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.2565 L22: 0.1050 REMARK 3 L33: 0.0611 L12: -0.0915 REMARK 3 L13: 0.0523 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.3284 S13: 0.1032 REMARK 3 S21: -0.4202 S22: -0.0230 S23: -0.0185 REMARK 3 S31: 0.2770 S32: 0.0606 S33: 0.0233 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 683:766) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0298 33.1903 16.6595 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.1487 REMARK 3 T33: 0.1931 T12: -0.0311 REMARK 3 T13: -0.0761 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.1869 L22: 0.4840 REMARK 3 L33: 0.4324 L12: -0.2962 REMARK 3 L13: 0.0183 L23: 0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: 0.0391 S13: -0.1620 REMARK 3 S21: -0.2440 S22: 0.0111 S23: 0.2763 REMARK 3 S31: 0.1571 S32: 0.0211 S33: -0.0295 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 767:863) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8264 41.4310 46.0953 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.3715 REMARK 3 T33: 0.2466 T12: 0.0356 REMARK 3 T13: 0.0257 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 0.7158 L22: 0.6674 REMARK 3 L33: 0.1034 L12: -0.1271 REMARK 3 L13: -0.1682 L23: -0.1222 REMARK 3 S TENSOR REMARK 3 S11: -0.1321 S12: -0.4858 S13: -0.0585 REMARK 3 S21: 0.2363 S22: 0.1146 S23: 0.1762 REMARK 3 S31: -0.0217 S32: -0.1036 S33: -0.0062 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 864:902) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7665 34.9356 24.8890 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 0.4037 REMARK 3 T33: 0.4558 T12: -0.0766 REMARK 3 T13: -0.0787 T23: 0.1367 REMARK 3 L TENSOR REMARK 3 L11: 0.0737 L22: 0.0415 REMARK 3 L33: 0.2273 L12: -0.0256 REMARK 3 L13: -0.0222 L23: -0.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: -0.0524 S13: -0.1206 REMARK 3 S21: -0.0541 S22: -0.0854 S23: 0.0691 REMARK 3 S31: -0.0361 S32: -0.0269 S33: 0.0135 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN P AND RESID 102:107) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0182 58.2535 29.4602 REMARK 3 T TENSOR REMARK 3 T11: 0.2695 T22: 0.8736 REMARK 3 T33: 1.0031 T12: -0.0129 REMARK 3 T13: 0.1070 T23: 0.1028 REMARK 3 L TENSOR REMARK 3 L11: 0.2863 L22: 0.0122 REMARK 3 L33: 0.0150 L12: 0.0481 REMARK 3 L13: -0.0174 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0410 S13: -0.0111 REMARK 3 S21: -0.0185 S22: -0.0402 S23: 0.0178 REMARK 3 S31: 0.0218 S32: -0.0826 S33: 0.0334 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN P AND RESID 108:111) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9591 57.1442 33.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.3329 REMARK 3 T33: 0.5207 T12: 0.0215 REMARK 3 T13: -0.0462 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.0829 L22: 0.0431 REMARK 3 L33: 0.0657 L12: -0.0586 REMARK 3 L13: 0.0672 L23: -0.0454 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0530 S13: 0.0489 REMARK 3 S21: 0.0209 S22: -0.0375 S23: -0.0264 REMARK 3 S31: -0.0088 S32: 0.0118 S33: 0.0161 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN P AND RESID 112:115) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2380 47.3732 24.6439 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.3377 REMARK 3 T33: 0.3524 T12: 0.0294 REMARK 3 T13: 0.0633 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 0.0986 L22: 0.0455 REMARK 3 L33: 0.0072 L12: 0.0676 REMARK 3 L13: 0.0206 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: -0.0963 S13: 0.0310 REMARK 3 S21: 0.0012 S22: 0.0186 S23: 0.0116 REMARK 3 S31: 0.0008 S32: -0.0662 S33: -0.0376 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN T AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6474 58.1183 30.5423 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.3050 REMARK 3 T33: 0.2385 T12: 0.0416 REMARK 3 T13: 0.1020 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.0782 L22: 0.0710 REMARK 3 L33: 0.0243 L12: -0.0715 REMARK 3 L13: -0.0350 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: 0.0894 S13: -0.0859 REMARK 3 S21: 0.0382 S22: -0.0359 S23: 0.0248 REMARK 3 S31: -0.0025 S32: -0.0234 S33: 0.0488 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN T AND RESID 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2528 53.9679 22.5298 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.3027 REMARK 3 T33: 0.3442 T12: 0.0330 REMARK 3 T13: 0.0611 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0294 L22: 0.3485 REMARK 3 L33: 0.1385 L12: -0.0516 REMARK 3 L13: 0.0495 L23: 0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.1609 S13: -0.0466 REMARK 3 S21: -0.0468 S22: 0.0187 S23: 0.0900 REMARK 3 S31: -0.0401 S32: -0.0735 S33: 0.0226 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN T AND RESID 10:14) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3353 55.5468 35.3054 REMARK 3 T TENSOR REMARK 3 T11: 0.3919 T22: 0.5720 REMARK 3 T33: 0.6627 T12: 0.2477 REMARK 3 T13: 0.1022 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.1240 L22: 0.4655 REMARK 3 L33: 0.4778 L12: -0.0351 REMARK 3 L13: -0.1573 L23: 0.4005 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: -0.1551 S13: 0.2709 REMARK 3 S21: 0.0228 S22: -0.1000 S23: 0.1647 REMARK 3 S31: -0.0007 S32: -0.1133 S33: 0.1453 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN T AND RESID 15:18) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2418 65.0988 30.0869 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.3401 REMARK 3 T33: 0.6912 T12: 0.0437 REMARK 3 T13: -0.0564 T23: 0.0727 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0010 REMARK 3 L33: 0.0014 L12: -0.0007 REMARK 3 L13: 0.0004 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: -0.0280 S13: -0.0234 REMARK 3 S21: -0.0043 S22: -0.0211 S23: 0.0192 REMARK 3 S31: 0.0087 S32: 0.0430 S33: 0.0357 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7_650 REMARK 200 STARTING MODEL: 3CQ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 17.5% PEG350, 180 MM REMARK 280 CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K, TEMPERATURE 298K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.39750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.39750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 256 REMARK 465 TYR A 257 REMARK 465 GLY A 258 REMARK 465 PHE A 903 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 NZ REMARK 470 LYS A 48 NZ REMARK 470 LYS A 55 CD CE NZ REMARK 470 GLN A 70 OE1 NE2 REMARK 470 LYS A 73 CD CE NZ REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 102 CD CE NZ REMARK 470 LYS A 130 CE NZ REMARK 470 LYS A 195 CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 VAL A 252 CG1 CG2 REMARK 470 ILE A 253 CG1 CG2 CD1 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ASN A 255 CG OD1 ND2 REMARK 470 ARG A 260 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 314 CD OE1 OE2 REMARK 470 GLU A 375 CD OE1 OE2 REMARK 470 LYS A 405 CD CE NZ REMARK 470 LYS A 435 CD CE NZ REMARK 470 LYS A 483 CE NZ REMARK 470 LEU A 508 CD1 CD2 REMARK 470 LEU A 514 CG CD1 CD2 REMARK 470 GLU A 528 CG CD OE1 OE2 REMARK 470 LYS A 529 NZ REMARK 470 LYS A 531 CD CE NZ REMARK 470 LYS A 532 CD CE NZ REMARK 470 LYS A 536 CG CD CE NZ REMARK 470 GLU A 612 CG CD OE1 OE2 REMARK 470 SER A 639 OG REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 LYS A 653 CD CE NZ REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 LYS A 724 CE NZ REMARK 470 LYS A 765 CD CE NZ REMARK 470 LYS A 769 CD CE NZ REMARK 470 LYS A 816 CD CE NZ REMARK 470 ILE A 819 CG1 CG2 CD1 REMARK 470 ASP A 820 CG OD1 OD2 REMARK 470 LYS A 878 CE NZ REMARK 470 LYS A 893 CG CD CE NZ REMARK 470 LYS A 894 CG CD CE NZ REMARK 470 LEU A 897 CG CD1 CD2 REMARK 470 ASP A 902 CG OD1 OD2 REMARK 470 DG P 102 O5' REMARK 470 DC P 115 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 17 O3' DC T 17 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 5 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA T 7 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA T 8 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG T 9 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA T 11 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC T 14 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC T 17 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC T 17 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC P 103 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DC P 110 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT P 112 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA P 113 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC P 115 O4' - C4' - C3' ANGL. DEV. = -4.2 DEGREES REMARK 500 DC P 115 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 61.77 -116.37 REMARK 500 PHE A 221 -73.36 -128.16 REMARK 500 LEU A 271 78.51 -118.12 REMARK 500 LEU A 303 97.28 -61.69 REMARK 500 LYS A 352 60.16 68.26 REMARK 500 ASN A 402 170.29 177.17 REMARK 500 SER A 414 59.80 39.73 REMARK 500 PHE A 415 -70.65 -40.67 REMARK 500 PHE A 415 -70.65 -40.84 REMARK 500 ASN A 424 43.26 71.80 REMARK 500 ASN A 505 61.15 -119.55 REMARK 500 LEU A 508 107.15 -55.19 REMARK 500 LYS A 531 7.37 -65.77 REMARK 500 ASP A 579 104.43 -172.30 REMARK 500 ASP A 579 103.56 -172.30 REMARK 500 THR A 611 -169.06 -69.52 REMARK 500 THR A 622 -67.28 69.43 REMARK 500 ASP A 623 24.47 -145.84 REMARK 500 GLU A 686 -87.69 -111.58 REMARK 500 PRO A 840 1.33 -69.55 REMARK 500 LYS A 888 54.43 70.01 REMARK 500 ASP A 899 4.84 -66.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 115 O REMARK 620 2 HOH A1437 O 67.3 REMARK 620 3 HOH A1438 O 127.1 163.3 REMARK 620 4 HOH A1439 O 117.0 127.3 57.6 REMARK 620 5 HOH A1471 O 134.5 80.1 91.6 60.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1006 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 172 OE1 REMARK 620 2 GLU A 172 OE2 53.3 REMARK 620 3 GLU A 177 OE2 128.6 82.1 REMARK 620 4 HOH A1441 O 101.8 138.2 95.7 REMARK 620 5 HOH A1467 O 97.9 145.7 131.4 56.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1009 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 192 OD2 REMARK 620 2 ASP A 192 OD1 53.7 REMARK 620 3 GLU A 196 OE1 110.2 77.3 REMARK 620 4 GLU A 196 OE2 130.6 76.9 54.0 REMARK 620 5 HOH A1383 O 66.0 103.2 84.2 137.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1011 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 232 OD1 REMARK 620 2 HOH A1399 O 125.3 REMARK 620 3 HOH A1400 O 75.0 82.8 REMARK 620 4 HOH A1401 O 102.3 82.5 159.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD1 REMARK 620 2 ASP A 411 OD2 54.1 REMARK 620 3 LEU A 412 O 69.7 99.2 REMARK 620 4 ASP A 623 OD1 118.6 75.7 88.3 REMARK 620 5 TTP A1001 O1B 151.1 154.0 99.2 86.7 REMARK 620 6 TTP A1001 O1A 123.2 85.8 165.6 79.7 72.2 REMARK 620 7 TTP A1001 O2G 78.2 117.7 98.5 163.3 77.2 90.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1013 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD2 REMARK 620 2 ASP A 623 OD2 75.5 REMARK 620 3 TTP A1001 O1A 78.1 79.5 REMARK 620 4 HOH A1141 O 131.0 86.3 142.9 REMARK 620 5 HOH A1424 O 71.4 132.0 124.8 89.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1010 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 505 O REMARK 620 2 ASN A 507 OD1 75.9 REMARK 620 3 LYS A 531 O 162.7 90.5 REMARK 620 4 HOH A1452 O 59.6 88.3 131.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 660 OE1 REMARK 620 2 ASP A 684 OD2 75.4 REMARK 620 3 HOH A1404 O 75.8 88.2 REMARK 620 4 HOH A1405 O 71.9 70.1 144.7 REMARK 620 5 HOH A1406 O 126.6 64.7 133.1 62.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1013 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KHQ RELATED DB: PDB REMARK 900 RELATED ID: 4KHS RELATED DB: PDB REMARK 900 RELATED ID: 4KHU RELATED DB: PDB REMARK 900 RELATED ID: 4KHW RELATED DB: PDB REMARK 900 RELATED ID: 4KI4 RELATED DB: PDB REMARK 900 RELATED ID: 4KI6 RELATED DB: PDB DBREF 4KHY A 1 903 UNP Q38087 DPOL_BPR69 1 903 DBREF 4KHY T 1 18 PDB 4KHY 4KHY 1 18 DBREF 4KHY P 102 115 PDB 4KHY 4KHY 102 115 SEQADV 4KHY ALA A 222 UNP Q38087 ASP 222 ENGINEERED MUTATION SEQADV 4KHY ALA A 327 UNP Q38087 ASP 327 ENGINEERED MUTATION SEQADV 4KHY PHE A 415 UNP Q38087 LEU 415 ENGINEERED MUTATION SEQRES 1 A 903 MET LYS GLU PHE TYR LEU THR VAL GLU GLN ILE GLY ASP SEQRES 2 A 903 SER ILE PHE GLU ARG TYR ILE ASP SER ASN GLY ARG GLU SEQRES 3 A 903 ARG THR ARG GLU VAL GLU TYR LYS PRO SER LEU PHE ALA SEQRES 4 A 903 HIS CYS PRO GLU SER GLN ALA THR LYS TYR PHE ASP ILE SEQRES 5 A 903 TYR GLY LYS PRO CYS THR ARG LYS LEU PHE ALA ASN MET SEQRES 6 A 903 ARG ASP ALA SER GLN TRP ILE LYS ARG MET GLU ASP ILE SEQRES 7 A 903 GLY LEU GLU ALA LEU GLY MET ASP ASP PHE LYS LEU ALA SEQRES 8 A 903 TYR LEU SER ASP THR TYR ASN TYR GLU ILE LYS TYR ASP SEQRES 9 A 903 HIS THR LYS ILE ARG VAL ALA ASN PHE ASP ILE GLU VAL SEQRES 10 A 903 THR SER PRO ASP GLY PHE PRO GLU PRO SER GLN ALA LYS SEQRES 11 A 903 HIS PRO ILE ASP ALA ILE THR HIS TYR ASP SER ILE ASP SEQRES 12 A 903 ASP ARG PHE TYR VAL PHE ASP LEU LEU ASN SER PRO TYR SEQRES 13 A 903 GLY ASN VAL GLU GLU TRP SER ILE GLU ILE ALA ALA LYS SEQRES 14 A 903 LEU GLN GLU GLN GLY GLY ASP GLU VAL PRO SER GLU ILE SEQRES 15 A 903 ILE ASP LYS ILE ILE TYR MET PRO PHE ASP ASN GLU LYS SEQRES 16 A 903 GLU LEU LEU MET GLU TYR LEU ASN PHE TRP GLN GLN LYS SEQRES 17 A 903 THR PRO VAL ILE LEU THR GLY TRP ASN VAL GLU SER PHE SEQRES 18 A 903 ALA ILE PRO TYR VAL TYR ASN ARG ILE LYS ASN ILE PHE SEQRES 19 A 903 GLY GLU SER THR ALA LYS ARG LEU SER PRO HIS ARG LYS SEQRES 20 A 903 THR ARG VAL LYS VAL ILE GLU ASN MET TYR GLY SER ARG SEQRES 21 A 903 GLU ILE ILE THR LEU PHE GLY ILE SER VAL LEU ASP TYR SEQRES 22 A 903 ILE ASP LEU TYR LYS LYS PHE SER PHE THR ASN GLN PRO SEQRES 23 A 903 SER TYR SER LEU ASP TYR ILE SER GLU PHE GLU LEU ASN SEQRES 24 A 903 VAL GLY LYS LEU LYS TYR ASP GLY PRO ILE SER LYS LEU SEQRES 25 A 903 ARG GLU SER ASN HIS GLN ARG TYR ILE SER TYR ASN ILE SEQRES 26 A 903 ILE ALA VAL TYR ARG VAL LEU GLN ILE ASP ALA LYS ARG SEQRES 27 A 903 GLN PHE ILE ASN LEU SER LEU ASP MET GLY TYR TYR ALA SEQRES 28 A 903 LYS ILE GLN ILE GLN SER VAL PHE SER PRO ILE LYS THR SEQRES 29 A 903 TRP ASP ALA ILE ILE PHE ASN SER LEU LYS GLU GLN ASN SEQRES 30 A 903 LYS VAL ILE PRO GLN GLY ARG SER HIS PRO VAL GLN PRO SEQRES 31 A 903 TYR PRO GLY ALA PHE VAL LYS GLU PRO ILE PRO ASN ARG SEQRES 32 A 903 TYR LYS TYR VAL MET SER PHE ASP LEU THR SER PHE TYR SEQRES 33 A 903 PRO SER ILE ILE ARG GLN VAL ASN ILE SER PRO GLU THR SEQRES 34 A 903 ILE ALA GLY THR PHE LYS VAL ALA PRO LEU HIS ASP TYR SEQRES 35 A 903 ILE ASN ALA VAL ALA GLU ARG PRO SER ASP VAL TYR SER SEQRES 36 A 903 CYS SER PRO ASN GLY MET MET TYR TYR LYS ASP ARG ASP SEQRES 37 A 903 GLY VAL VAL PRO THR GLU ILE THR LYS VAL PHE ASN GLN SEQRES 38 A 903 ARG LYS GLU HIS LYS GLY TYR MET LEU ALA ALA GLN ARG SEQRES 39 A 903 ASN GLY GLU ILE ILE LYS GLU ALA LEU HIS ASN PRO ASN SEQRES 40 A 903 LEU SER VAL ASP GLU PRO LEU ASP VAL ASP TYR ARG PHE SEQRES 41 A 903 ASP PHE SER ASP GLU ILE LYS GLU LYS ILE LYS LYS LEU SEQRES 42 A 903 SER ALA LYS SER LEU ASN GLU MET LEU PHE ARG ALA GLN SEQRES 43 A 903 ARG THR GLU VAL ALA GLY MET THR ALA GLN ILE ASN ARG SEQRES 44 A 903 LYS LEU LEU ILE ASN SER LEU TYR GLY ALA LEU GLY ASN SEQRES 45 A 903 VAL TRP PHE ARG TYR TYR ASP LEU ARG ASN ALA THR ALA SEQRES 46 A 903 ILE THR THR PHE GLY GLN MET ALA LEU GLN TRP ILE GLU SEQRES 47 A 903 ARG LYS VAL ASN GLU TYR LEU ASN GLU VAL CYS GLY THR SEQRES 48 A 903 GLU GLY GLU ALA PHE VAL LEU TYR GLY ASP THR ASP SER SEQRES 49 A 903 ILE TYR VAL SER ALA ASP LYS ILE ILE ASP LYS VAL GLY SEQRES 50 A 903 GLU SER LYS PHE ARG ASP THR ASN HIS TRP VAL ASP PHE SEQRES 51 A 903 LEU ASP LYS PHE ALA ARG GLU ARG MET GLU PRO ALA ILE SEQRES 52 A 903 ASP ARG GLY PHE ARG GLU MET CYS GLU TYR MET ASN ASN SEQRES 53 A 903 LYS GLN HIS LEU MET PHE MET ASP ARG GLU ALA ILE ALA SEQRES 54 A 903 GLY PRO PRO LEU GLY SER LYS GLY ILE GLY GLY PHE TRP SEQRES 55 A 903 THR GLY LYS LYS ARG TYR ALA LEU ASN VAL TRP ASP MET SEQRES 56 A 903 GLU GLY THR ARG TYR ALA GLU PRO LYS LEU LYS ILE MET SEQRES 57 A 903 GLY LEU GLU THR GLN LYS SER SER THR PRO LYS ALA VAL SEQRES 58 A 903 GLN LYS ALA LEU LYS GLU CYS ILE ARG ARG MET LEU GLN SEQRES 59 A 903 GLU GLY GLU GLU SER LEU GLN GLU TYR PHE LYS GLU PHE SEQRES 60 A 903 GLU LYS GLU PHE ARG GLN LEU ASN TYR ILE SER ILE ALA SEQRES 61 A 903 SER VAL SER SER ALA ASN ASN ILE ALA LYS TYR ASP VAL SEQRES 62 A 903 GLY GLY PHE PRO GLY PRO LYS CYS PRO PHE HIS ILE ARG SEQRES 63 A 903 GLY ILE LEU THR TYR ASN ARG ALA ILE LYS GLY ASN ILE SEQRES 64 A 903 ASP ALA PRO GLN VAL VAL GLU GLY GLU LYS VAL TYR VAL SEQRES 65 A 903 LEU PRO LEU ARG GLU GLY ASN PRO PHE GLY ASP LYS CYS SEQRES 66 A 903 ILE ALA TRP PRO SER GLY THR GLU ILE THR ASP LEU ILE SEQRES 67 A 903 LYS ASP ASP VAL LEU HIS TRP MET ASP TYR THR VAL LEU SEQRES 68 A 903 LEU GLU LYS THR PHE ILE LYS PRO LEU GLU GLY PHE THR SEQRES 69 A 903 SER ALA ALA LYS LEU ASP TYR GLU LYS LYS ALA SER LEU SEQRES 70 A 903 PHE ASP MET PHE ASP PHE SEQRES 1 T 18 DA DC DA DG DG U DA DA DG DC DA DG DT SEQRES 2 T 18 DC DC DG DC DG SEQRES 1 P 14 DG DC DG DG DA DC DT DG DC DT DT DA DC SEQRES 2 P 14 DC HET TTP A1001 29 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET NA A1006 1 HET NA A1007 1 HET NA A1008 1 HET CA A1009 1 HET CA A1010 1 HET NA A1011 1 HET NA A1012 1 HET NA A1013 1 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 4 TTP C10 H17 N2 O14 P3 FORMUL 5 CA 6(CA 2+) FORMUL 9 NA 6(NA 1+) FORMUL 17 HOH *480(H2 O) HELIX 1 1 ASN A 64 GLY A 79 1 16 HELIX 2 2 ASP A 87 TYR A 97 1 11 HELIX 3 3 ASP A 104 ILE A 108 5 5 HELIX 4 4 SER A 163 LYS A 169 1 7 HELIX 5 5 LEU A 170 GLY A 174 5 5 HELIX 6 6 PRO A 179 ASP A 184 1 6 HELIX 7 7 ASN A 193 LYS A 208 1 16 HELIX 8 8 PHE A 221 GLY A 235 1 15 HELIX 9 9 GLY A 235 LYS A 240 1 6 HELIX 10 10 ARG A 241 SER A 243 5 3 HELIX 11 11 ASP A 272 SER A 281 1 10 HELIX 12 12 SER A 289 ASN A 299 1 11 HELIX 13 13 PRO A 308 SER A 310 5 3 HELIX 14 14 LYS A 311 ASN A 316 1 6 HELIX 15 15 ASN A 316 GLN A 339 1 24 HELIX 16 16 GLN A 339 LYS A 352 1 14 HELIX 17 17 GLN A 354 PHE A 359 5 6 HELIX 18 18 SER A 360 GLU A 375 1 16 HELIX 19 19 SER A 414 ASN A 424 1 11 HELIX 20 20 PRO A 438 ASN A 444 1 7 HELIX 21 21 GLY A 469 LEU A 503 1 35 HELIX 22 22 SER A 523 LYS A 531 1 9 HELIX 23 23 SER A 534 LEU A 570 1 37 HELIX 24 24 ASP A 579 GLY A 610 1 32 HELIX 25 25 ALA A 629 GLY A 637 1 9 HELIX 26 26 GLU A 638 PHE A 641 5 4 HELIX 27 27 ASP A 643 ARG A 658 1 16 HELIX 28 28 ARG A 658 MET A 674 1 17 HELIX 29 29 LEU A 730 LYS A 734 5 5 HELIX 30 30 PRO A 738 GLU A 755 1 18 HELIX 31 31 GLY A 756 PHE A 771 1 16 HELIX 32 32 ARG A 772 LEU A 774 5 3 HELIX 33 33 ASN A 775 ALA A 780 5 6 HELIX 34 34 ILE A 788 LYS A 790 5 3 HELIX 35 35 PRO A 802 LYS A 816 1 15 HELIX 36 36 ILE A 858 MET A 866 1 9 HELIX 37 37 ASP A 867 PHE A 876 1 10 HELIX 38 38 PHE A 876 LYS A 888 1 13 HELIX 39 39 SER A 896 PHE A 901 5 6 SHEET 1 A 3 PHE A 4 ILE A 11 0 SHEET 2 A 3 SER A 14 ILE A 20 -1 O SER A 14 N ILE A 11 SHEET 3 A 3 GLU A 26 VAL A 31 -1 O VAL A 31 N ILE A 15 SHEET 1 B 2 SER A 36 HIS A 40 0 SHEET 2 B 2 CYS A 57 LEU A 61 -1 O LYS A 60 N LEU A 37 SHEET 1 C 2 PHE A 50 ASP A 51 0 SHEET 2 C 2 LYS A 378 VAL A 379 1 O VAL A 379 N PHE A 50 SHEET 1 D 6 ILE A 186 PHE A 191 0 SHEET 2 D 6 ARG A 145 LEU A 151 1 N PHE A 146 O ILE A 187 SHEET 3 D 6 ILE A 133 ASP A 140 -1 N ILE A 136 O PHE A 149 SHEET 4 D 6 VAL A 110 VAL A 117 -1 N ASN A 112 O TYR A 139 SHEET 5 D 6 ILE A 212 THR A 214 1 O ILE A 212 N ALA A 111 SHEET 6 D 6 SER A 269 VAL A 270 1 O SER A 269 N LEU A 213 SHEET 1 E 2 ASN A 153 SER A 154 0 SHEET 2 E 2 GLY A 157 ASN A 158 -1 O GLY A 157 N SER A 154 SHEET 1 F 2 THR A 248 ILE A 253 0 SHEET 2 F 2 ARG A 260 LEU A 265 -1 O ARG A 260 N ILE A 253 SHEET 1 G 7 ASN A 402 ARG A 403 0 SHEET 2 G 7 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 G 7 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 G 7 MET A 683 ALA A 689 -1 N ILE A 688 O TRP A 713 SHEET 5 G 7 VAL A 407 LEU A 412 -1 N SER A 409 O GLU A 686 SHEET 6 G 7 SER A 624 SER A 628 -1 O VAL A 627 N MET A 408 SHEET 7 G 7 VAL A 617 GLY A 620 -1 N LEU A 618 O TYR A 626 SHEET 1 H 4 ASN A 402 ARG A 403 0 SHEET 2 H 4 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 H 4 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 H 4 THR A 718 MET A 728 -1 O LYS A 726 N LEU A 710 SHEET 1 I 3 ILE A 430 THR A 433 0 SHEET 2 I 3 MET A 461 TYR A 463 -1 O MET A 462 N ALA A 431 SHEET 3 I 3 SER A 455 CYS A 456 -1 N SER A 455 O TYR A 463 SHEET 1 J 3 SER A 781 SER A 784 0 SHEET 2 J 3 LYS A 829 PRO A 834 -1 O VAL A 832 N SER A 781 SHEET 3 J 3 CYS A 845 PRO A 849 -1 O TRP A 848 N TYR A 831 SHEET 1 K 2 ASP A 792 VAL A 793 0 SHEET 2 K 2 PHE A 796 PRO A 797 -1 O PHE A 796 N VAL A 793 LINK O ILE A 115 NA NA A1012 1555 1555 3.19 LINK OE1 GLU A 172 NA NA A1006 1555 1555 2.40 LINK OE2 GLU A 172 NA NA A1006 1555 1555 2.49 LINK OE2 GLU A 177 NA NA A1006 1555 1555 2.41 LINK OD2 ASP A 192 CA CA A1009 1555 1555 2.38 LINK OD1 ASP A 192 CA CA A1009 1555 1555 2.47 LINK OE1 GLU A 196 CA CA A1009 1555 1555 2.40 LINK OE2 GLU A 196 CA CA A1009 1555 1555 2.44 LINK OD1 ASN A 232 NA NA A1011 1555 1555 2.39 LINK OD1 ASP A 411 CA CA A1002 1555 1555 2.40 LINK OD2 ASP A 411 CA CA A1002 1555 1555 2.42 LINK OD2 ASP A 411 NA NA A1013 1555 1555 2.45 LINK O LEU A 412 CA CA A1002 1555 1555 2.30 LINK O ASN A 505 CA CA A1010 1555 1555 2.38 LINK OD1 ASN A 507 CA CA A1010 1555 1555 2.35 LINK O LYS A 531 CA CA A1010 1555 1555 2.14 LINK OD1 ASP A 623 CA CA A1002 1555 1555 2.30 LINK OD2 ASP A 623 NA NA A1013 1555 1555 2.47 LINK OE1 GLU A 660 CA CA A1005 1555 1555 3.06 LINK OD2 ASP A 684 CA CA A1005 1555 1555 2.41 LINK OE1 GLU A 716 CA CA A1003 1555 1555 3.20 LINK O1B TTP A1001 CA CA A1002 1555 1555 2.18 LINK O1A TTP A1001 CA CA A1002 1555 1555 2.20 LINK O2G TTP A1001 CA CA A1002 1555 1555 2.26 LINK O1A TTP A1001 NA NA A1013 1555 1555 2.55 LINK CA CA A1005 O HOH A1404 1555 1555 2.37 LINK CA CA A1005 O HOH A1405 1555 1555 2.38 LINK CA CA A1005 O HOH A1406 1555 1555 3.13 LINK NA NA A1006 O HOH A1441 1555 1555 2.43 LINK NA NA A1006 O HOH A1467 1555 1555 2.38 LINK CA CA A1009 O HOH A1383 1555 1555 2.40 LINK CA CA A1010 O HOH A1452 1555 1555 3.19 LINK NA NA A1011 O HOH A1399 1555 1555 2.41 LINK NA NA A1011 O HOH A1400 1555 1555 2.38 LINK NA NA A1011 O HOH A1401 1555 1555 2.35 LINK NA NA A1012 O HOH A1437 1555 1555 2.39 LINK NA NA A1012 O HOH A1438 1555 1555 2.42 LINK NA NA A1012 O HOH A1439 1555 1555 2.35 LINK NA NA A1012 O HOH A1471 1555 1555 2.40 LINK NA NA A1013 O HOH A1141 1555 1555 2.41 LINK NA NA A1013 O HOH A1424 1555 1555 2.41 SITE 1 AC1 17 ASP A 411 LEU A 412 SER A 414 PHE A 415 SITE 2 AC1 17 TYR A 416 ARG A 482 LYS A 560 ASN A 564 SITE 3 AC1 17 ASP A 623 CA A1002 NA A1013 HOH A1108 SITE 4 AC1 17 HOH A1167 HOH A1265 DC P 115 DA T 3 SITE 5 AC1 17 DG T 4 SITE 1 AC2 5 ASP A 411 LEU A 412 ASP A 623 TTP A1001 SITE 2 AC2 5 NA A1013 SITE 1 AC3 2 GLU A 686 GLU A 716 SITE 1 AC4 4 GLU A 660 ASP A 684 HOH A1404 HOH A1405 SITE 1 AC5 4 GLU A 172 GLU A 177 HOH A1441 HOH A1467 SITE 1 AC6 4 ASP A 192 GLU A 196 ASP A 860 HOH A1383 SITE 1 AC7 3 ASN A 505 ASN A 507 LYS A 531 SITE 1 AC8 4 ASN A 232 HOH A1399 HOH A1400 HOH A1401 SITE 1 AC9 7 ASP A 114 ILE A 115 GLU A 116 HOH A1437 SITE 2 AC9 7 HOH A1438 HOH A1439 HOH A1471 SITE 1 BC1 6 ASP A 411 ASP A 623 TTP A1001 CA A1002 SITE 2 BC1 6 HOH A1141 HOH A1424 CRYST1 80.795 118.240 127.610 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007836 0.00000