PDB Short entry for 4KRL HEADER TRANSFERASE/IMMUNE SYSTEM 16-MAY-13 4KRL TITLE NANOBODY/VHH DOMAIN 7D12 IN COMPLEX WITH DOMAIN III OF THE TITLE 2 EXTRACELLULAR REGION OF EGFR, PH 6.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY/VHH DOMAIN 7D12; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: EXTRACELLULAR REGION DOMAIN III (UNP RESIDUES 335-538); COMPND 9 SYNONYM: PROTO-ONCOGENE C-ERBB-1, RECEPTOR TYROSINE-PROTEIN KINASE COMPND 10 ERBB-1; COMPND 11 EC: 2.7.10.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS CELL SURFACE RECEPTOR, GLYCOPROTEIN, NANOBODY, VHH DOMAIN, CAMELID VH KEYWDS 2 DOMAIN, ANTIBODY, ANTIGEN, ANTIBODY COMPLEX, TRANSFERASE-IMMUNE KEYWDS 3 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.FERGUSON,K.R.SCHMITZ REVDAT 3 20-SEP-23 4KRL 1 HETSYN REVDAT 2 29-JUL-20 4KRL 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 28-AUG-13 4KRL 0 JRNL AUTH K.R.SCHMITZ,A.BAGCHI,R.C.ROOVERS, JRNL AUTH 2 P.M.P.VAN BERGEN EN HENEGOUWEN,K.M.FERGUSON JRNL TITL STRUCTURAL EVALUATION OF EGFR INHIBITION MECHANISMS FOR JRNL TITL 2 NANOBODIES/VHH DOMAINS. JRNL REF STRUCTURE V. 21 1214 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23791944 JRNL DOI 10.1016/J.STR.2013.05.008 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 12678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7905 - 4.5217 1.00 3241 147 0.2091 0.2500 REMARK 3 2 4.5217 - 3.5896 1.00 3047 162 0.1859 0.2290 REMARK 3 3 3.5896 - 3.1360 1.00 3024 148 0.2294 0.3246 REMARK 3 4 3.1360 - 2.8490 0.93 2749 160 0.2852 0.3717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2548 REMARK 3 ANGLE : 0.771 3470 REMARK 3 CHIRALITY : 0.052 393 REMARK 3 PLANARITY : 0.004 442 REMARK 3 DIHEDRAL : 15.739 887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12683 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.849 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3B2U AND 4KRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG3350, 50 MM POTASSIUM IODIDE, REMARK 280 0.1 M MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.50333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.00667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.25500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.75833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.75167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.50333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.00667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.75833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.25500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.75167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 123 REMARK 465 SER B 124 REMARK 465 ALA B 125 REMARK 465 LEU B 126 REMARK 465 GLU B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 LYS A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 465 HIS A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 ASP A 323 CG OD1 OD2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 GLN A 366 CG CD OE1 NE2 REMARK 470 GLU A 388 CG CD OE1 OE2 REMARK 470 LYS A 430 CG CD CE NZ REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 SER A 460 OG REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 LYS A 476 CG CD CE NZ REMARK 470 ARG A 497 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 503 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 504 CG OD1 ND2 REMARK 470 VAL A 505 CG1 CG2 REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 509 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 337 C2 NAG A 603 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 14 104.32 -53.88 REMARK 500 ARG B 27 71.49 -61.84 REMARK 500 SER B 29 59.14 -91.74 REMARK 500 GLN A 411 -49.72 -137.15 REMARK 500 TYR A 447 -20.89 68.12 REMARK 500 LYS A 463 -167.00 -117.43 REMARK 500 ASN A 469 -156.37 -101.36 REMARK 500 ASN A 504 -87.34 -106.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KRM RELATED DB: PDB REMARK 900 RELATED ID: 4KRN RELATED DB: PDB REMARK 900 RELATED ID: 4KRO RELATED DB: PDB REMARK 900 RELATED ID: 4KRP RELATED DB: PDB DBREF 4KRL A 311 514 UNP P00533 EGFR_HUMAN 335 538 DBREF 4KRL B 1 133 PDB 4KRL 4KRL 1 133 SEQADV 4KRL LEU A 307 UNP P00533 EXPRESSION TAG SEQADV 4KRL GLU A 308 UNP P00533 EXPRESSION TAG SEQADV 4KRL GLU A 309 UNP P00533 EXPRESSION TAG SEQADV 4KRL LYS A 310 UNP P00533 EXPRESSION TAG SEQADV 4KRL HIS A 515 UNP P00533 EXPRESSION TAG SEQADV 4KRL HIS A 516 UNP P00533 EXPRESSION TAG SEQADV 4KRL HIS A 517 UNP P00533 EXPRESSION TAG SEQADV 4KRL HIS A 518 UNP P00533 EXPRESSION TAG SEQADV 4KRL HIS A 519 UNP P00533 EXPRESSION TAG SEQADV 4KRL HIS A 520 UNP P00533 EXPRESSION TAG SEQRES 1 B 133 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 133 THR GLY GLY SER LEU ARG LEU THR CYS ALA ALA SER GLY SEQRES 3 B 133 ARG THR SER ARG SER TYR GLY MET GLY TRP PHE ARG GLN SEQRES 4 B 133 ALA PRO GLY LYS GLU ARG GLU PHE VAL SER GLY ILE SER SEQRES 5 B 133 TRP ARG GLY ASP SER THR GLY TYR ALA ASP SER VAL LYS SEQRES 6 B 133 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 133 VAL ASP LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 133 ALA ILE TYR TYR CYS ALA ALA ALA ALA GLY SER ALA TRP SEQRES 9 B 133 TYR GLY THR LEU TYR GLU TYR ASP TYR TRP GLY GLN GLY SEQRES 10 B 133 THR GLN VAL THR VAL SER SER ALA LEU GLU HIS HIS HIS SEQRES 11 B 133 HIS HIS HIS SEQRES 1 A 214 LEU GLU GLU LYS LYS VAL CYS ASN GLY ILE GLY ILE GLY SEQRES 2 A 214 GLU PHE LYS ASP SER LEU SER ILE ASN ALA THR ASN ILE SEQRES 3 A 214 LYS HIS PHE LYS ASN CYS THR SER ILE SER GLY ASP LEU SEQRES 4 A 214 HIS ILE LEU PRO VAL ALA PHE ARG GLY ASP SER PHE THR SEQRES 5 A 214 HIS THR PRO PRO LEU ASP PRO GLN GLU LEU ASP ILE LEU SEQRES 6 A 214 LYS THR VAL LYS GLU ILE THR GLY PHE LEU LEU ILE GLN SEQRES 7 A 214 ALA TRP PRO GLU ASN ARG THR ASP LEU HIS ALA PHE GLU SEQRES 8 A 214 ASN LEU GLU ILE ILE ARG GLY ARG THR LYS GLN HIS GLY SEQRES 9 A 214 GLN PHE SER LEU ALA VAL VAL SER LEU ASN ILE THR SER SEQRES 10 A 214 LEU GLY LEU ARG SER LEU LYS GLU ILE SER ASP GLY ASP SEQRES 11 A 214 VAL ILE ILE SER GLY ASN LYS ASN LEU CYS TYR ALA ASN SEQRES 12 A 214 THR ILE ASN TRP LYS LYS LEU PHE GLY THR SER GLY GLN SEQRES 13 A 214 LYS THR LYS ILE ILE SER ASN ARG GLY GLU ASN SER CYS SEQRES 14 A 214 LYS ALA THR GLY GLN VAL CYS HIS ALA LEU CYS SER PRO SEQRES 15 A 214 GLU GLY CYS TRP GLY PRO GLU PRO ARG ASP CYS VAL SER SEQRES 16 A 214 CYS ARG ASN VAL SER ARG GLY ARG GLU CYS VAL ASP LYS SEQRES 17 A 214 HIS HIS HIS HIS HIS HIS MODRES 4KRL ASN A 337 ASN GLYCOSYLATION SITE MODRES 4KRL ASN A 328 ASN GLYCOSYLATION SITE MODRES 4KRL ASN A 420 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET MES B 201 12 HET NAG A 603 14 HET NAG A 604 14 HET IOD A 605 1 HET MES A 606 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM IOD IODIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 7 IOD I 1- FORMUL 9 HOH *36(H2 O) HELIX 1 1 ASP B 62 LYS B 65 5 4 HELIX 2 2 LYS B 87 THR B 91 5 5 HELIX 3 3 THR B 107 TYR B 111 5 5 HELIX 4 4 ILE A 318 LYS A 322 5 5 HELIX 5 5 THR A 330 LYS A 336 5 7 HELIX 6 6 PRO A 349 GLY A 354 1 6 HELIX 7 7 ASP A 364 VAL A 374 5 11 HELIX 8 8 LEU A 393 GLU A 397 5 5 HELIX 9 9 LYS A 407 GLY A 410 5 4 HELIX 10 10 TYR A 447 ILE A 451 5 5 HELIX 11 11 ASN A 452 LEU A 456 5 5 HELIX 12 12 GLY A 471 THR A 478 1 8 HELIX 13 13 GLU A 495 CYS A 499 5 5 SHEET 1 A 4 VAL B 2 SER B 7 0 SHEET 2 A 4 ARG B 19 GLY B 26 -1 O THR B 21 N SER B 7 SHEET 3 A 4 THR B 78 MET B 83 -1 O LEU B 81 N LEU B 20 SHEET 4 A 4 PHE B 68 ASP B 73 -1 N SER B 71 O ASP B 80 SHEET 1 B 6 GLY B 10 SER B 11 0 SHEET 2 B 6 THR B 118 THR B 121 1 O THR B 121 N GLY B 10 SHEET 3 B 6 ALA B 92 ALA B 100 -1 N TYR B 94 O THR B 118 SHEET 4 B 6 TYR B 32 GLN B 39 -1 N GLY B 33 O ALA B 99 SHEET 5 B 6 GLU B 46 ILE B 51 -1 O SER B 49 N TRP B 36 SHEET 6 B 6 THR B 58 TYR B 60 -1 O GLY B 59 N GLY B 50 SHEET 1 C 4 GLY B 10 SER B 11 0 SHEET 2 C 4 THR B 118 THR B 121 1 O THR B 121 N GLY B 10 SHEET 3 C 4 ALA B 92 ALA B 100 -1 N TYR B 94 O THR B 118 SHEET 4 C 4 TYR B 113 TRP B 114 -1 O TYR B 113 N ALA B 98 SHEET 1 D 5 VAL A 312 ASN A 314 0 SHEET 2 D 5 SER A 340 SER A 342 1 O SER A 340 N CYS A 313 SHEET 3 D 5 GLU A 376 ILE A 377 1 O GLU A 376 N ILE A 341 SHEET 4 D 5 ILE A 401 ILE A 402 1 O ILE A 401 N ILE A 377 SHEET 5 D 5 GLU A 431 ILE A 432 1 O GLU A 431 N ILE A 402 SHEET 1 E 5 LEU A 345 ILE A 347 0 SHEET 2 E 5 LEU A 381 ILE A 383 1 O LEU A 382 N LEU A 345 SHEET 3 E 5 PHE A 412 VAL A 417 1 O ALA A 415 N LEU A 381 SHEET 4 E 5 ASP A 436 SER A 440 1 O ASP A 436 N SER A 413 SHEET 5 E 5 THR A 464 ILE A 467 1 O LYS A 465 N VAL A 437 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.04 SSBOND 2 CYS A 313 CYS A 338 1555 1555 2.02 SSBOND 3 CYS A 446 CYS A 475 1555 1555 2.03 SSBOND 4 CYS A 482 CYS A 491 1555 1555 2.03 SSBOND 5 CYS A 486 CYS A 499 1555 1555 2.03 SSBOND 6 CYS A 502 CYS A 511 1555 1555 2.03 LINK ND2 ASN A 328 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 337 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN A 420 C1 NAG A 604 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CRYST1 148.048 148.048 82.510 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006755 0.003900 0.000000 0.00000 SCALE2 0.000000 0.007800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012120 0.00000