PDB Short entry for 4L8Q HEADER SUGAR BINDING PROTEIN, PLANT PROTEIN 17-JUN-13 4L8Q TITLE CRYSTAL STRUCTURE OF CANAVALIA GRANDIFLORA SEED LECTIN COMPLEXED WITH TITLE 2 X-MAN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CANAVALIA GRANDIFLORA SEED LECTIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA GRANDIFLORA; SOURCE 3 ORGANISM_TAXID: 232301 KEYWDS JELLY ROLL DOMAIN, LECTIN, CARBOHYDRATE/SUGAR BINDING, PROTEIN KEYWDS 2 BODIES, SUGAR BINDING PROTEIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.L.BARROSO-NETO,B.A.M.ROCHA,R.C.SIMOES,M.J.B.BEZERRA,F.N.PEREIRA- AUTHOR 2 JUNIOR,V.J.S.OSTERNE,K.S.NASCIMENTO,C.S.NAGANO,P.DELATORRE, AUTHOR 3 A.H.SAMPAIO,B.S.CAVADA REVDAT 4 20-SEP-23 4L8Q 1 HETSYN REVDAT 3 29-JUL-20 4L8Q 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 15-NOV-17 4L8Q 1 REMARK REVDAT 1 21-MAY-14 4L8Q 0 JRNL AUTH I.L.BARROSO-NETO,R.C.SIMOES,B.A.ROCHA,M.J.BEZERRA, JRNL AUTH 2 F.N.PEREIRA-JUNIOR,V.J.SILVA OSTERNE,K.S.NASCIMENTO, JRNL AUTH 3 C.S.NAGANO,P.DELATORRE,M.G.PEREIRA,A.FREITAS PIRES, JRNL AUTH 4 A.H.SAMPAIO,A.M.ASSREUY,B.S.CAVADA JRNL TITL VASORELAXANT ACTIVITY OF CANAVALIA GRANDIFLORA SEED LECTIN: JRNL TITL 2 A STRUCTURAL ANALYSIS. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 543 31 2014 JRNL REFN ISSN 0003-9861 JRNL PMID 24361256 JRNL DOI 10.1016/J.ABB.2013.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 36.10000 REMARK 3 B22 (A**2) : -22.66000 REMARK 3 B33 (A**2) : -13.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1865 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2542 ; 2.121 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 8.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;39.472 ;25.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 284 ;17.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;14.974 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 294 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1395 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4L8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.47 REMARK 200 MONOCHROMATOR : CURVED CRYSTAL OF SILICON (111), REMARK 200 ASYMMETRICAL CUT. ASYMMETRY REMARK 200 ANGLE 7.25 , CONDENSED MODE. REMARK 200 RANGE OF PHOTON ENERGIES OF X- REMARK 200 RAY: 6 KEV-12 KEV (2 1 ). REMARK 200 DIMENSIONS: 250 MM X 50 MM (AT REMARK 200 THE BASE) X 1 MM. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 10.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 2OVU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CADMIUM SULFATE HYDRATE, 0.1 M REMARK 280 HEPES BUFFER, AND 1.0 M SODIUM ACETATE TRIHYDRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.71100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.57600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.35400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.71100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.57600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.35400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.71100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.57600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.35400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.71100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 32.57600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.35400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -242.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -65.15200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -65.15200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 117 REMARK 465 ASN A 118 REMARK 465 SER A 119 REMARK 465 THR A 120 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 ASP A 10 OD2 96.1 REMARK 620 3 ASP A 19 OD1 165.0 98.0 REMARK 620 4 HIS A 24 NE2 88.2 98.5 94.8 REMARK 620 5 HOH A 477 O 83.7 177.8 82.0 83.7 REMARK 620 6 HOH A 478 O 83.2 84.6 93.0 171.1 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 ASP A 10 OD1 53.3 REMARK 620 3 TYR A 12 O 115.1 74.6 REMARK 620 4 ASN A 14 OD1 163.9 141.3 72.1 REMARK 620 5 ASP A 19 OD2 80.3 105.5 79.4 87.3 REMARK 620 6 HOH A 410 O 116.1 83.0 89.0 77.2 163.0 REMARK 620 7 HOH A 423 O 72.1 114.3 171.0 99.6 97.0 92.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 306 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD1 REMARK 620 2 ASP A 82 OD1 91.6 REMARK 620 3 ASP A 82 OD2 77.3 55.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 305 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 87 OE1 REMARK 620 2 GLU A 87 OE2 48.6 REMARK 620 3 GLU A 183 OE2 80.0 75.2 REMARK 620 4 GLU A 183 OE1 60.9 97.1 53.6 REMARK 620 5 HOH A 421 O 83.4 122.9 131.8 78.8 REMARK 620 6 HOH A 456 O 99.4 57.6 109.8 154.3 117.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CWM RELATED DB: PDB REMARK 900 RELATED ID: 2D7F RELATED DB: PDB REMARK 900 RELATED ID: 3JU9 RELATED DB: PDB REMARK 900 RELATED ID: 3A0K RELATED DB: PDB DBREF 4L8Q A 1 237 PDB 4L8Q 4L8Q 1 237 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO ASN TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER ILE ARG SER LYS LYS ILE ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASP GLY LYS VAL ALA THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL GLY LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR ALA GLU THR ASN ALA LEU HIS PHE THR PHE SEQRES 11 A 237 ASN GLN PHE THR LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 A 237 THR ARG VAL SER SER ASP GLY THR PRO GLN GLY ASN SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER ASP PRO ALA ASP SEQRES 17 A 237 GLY ILE THR PHE PHE ILE SER ASN MET ASP SER THR ILE SEQRES 18 A 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN HET CA A 301 1 HET MN A 302 1 HET XMM A 303 23 HET SO4 A 304 5 HET CD A 305 1 HET CD A 306 1 HET GOL A 307 6 HET GOL A 308 6 HET GOL A 309 6 HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETNAM XMM 5-BROMO-4-CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOPYRANOSIDE HETNAM SO4 SULFATE ION HETNAM CD CADMIUM ION HETNAM GOL GLYCEROL HETSYN XMM (2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)- HETSYN 2 XMM TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL; (5- HETSYN 3 XMM BROMO-4-CHLORO-3-INDOLYL)-ALPHA-D-MANNOSE; 5-BROMO-4- HETSYN 4 XMM CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOSIDE; 5-BROMO-4- HETSYN 5 XMM CHLORO-1H-INDOL-3-YL D-MANNOSIDE; 5-BROMO-4-CHLORO-1H- HETSYN 6 XMM INDOL-3-YL MANNOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 MN MN 2+ FORMUL 4 XMM C14 H15 BR CL N O6 FORMUL 5 SO4 O4 S 2- FORMUL 6 CD 2(CD 2+) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 HOH *88(H2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 GLY A 226 LEU A 230 5 5 SHEET 1 A 7 LYS A 36 LYS A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N GLU A 8 O GLY A 26 SHEET 4 A 7 GLY A 209 ASN A 216 -1 O ILE A 214 N VAL A 5 SHEET 5 A 7 TRP A 88 THR A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 A 7 VAL A 170 PHE A 175 -1 O GLY A 171 N ALA A 95 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 B 6 LYS A 36 LYS A 39 0 SHEET 2 B 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 B 6 ILE A 4 ASP A 10 -1 N GLU A 8 O GLY A 26 SHEET 4 B 6 GLY A 209 ASN A 216 -1 O ILE A 214 N VAL A 5 SHEET 5 B 6 TRP A 88 THR A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 B 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 C 6 SER A 72 ASP A 78 0 SHEET 2 C 6 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 C 6 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 C 6 VAL A 188 LEU A 198 -1 O PHE A 197 N ALA A 48 SHEET 5 C 6 THR A 105 LYS A 116 -1 N SER A 110 O THR A 194 SHEET 6 C 6 ASN A 124 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 1 D 7 SER A 72 ASP A 78 0 SHEET 2 D 7 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 D 7 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 D 7 VAL A 188 LEU A 198 -1 O PHE A 197 N ALA A 48 SHEET 5 D 7 THR A 105 LYS A 116 -1 N SER A 110 O THR A 194 SHEET 6 D 7 LEU A 154 GLN A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 D 7 THR A 147 THR A 148 -1 N THR A 147 O GLN A 155 LINK OE1 GLU A 8 MN MN A 302 1555 1555 2.30 LINK OD2 ASP A 10 CA CA A 301 1555 1555 2.33 LINK OD1 ASP A 10 CA CA A 301 1555 1555 2.54 LINK OD2 ASP A 10 MN MN A 302 1555 1555 2.24 LINK O TYR A 12 CA CA A 301 1555 1555 2.31 LINK OD1 ASN A 14 CA CA A 301 1555 1555 2.15 LINK OD2 ASP A 19 CA CA A 301 1555 1555 2.35 LINK OD1 ASP A 19 MN MN A 302 1555 1555 2.35 LINK NE2 HIS A 24 MN MN A 302 1555 1555 1.94 LINK OD1 ASP A 80 CD CD A 306 1555 1555 2.65 LINK OD1 ASP A 82 CD CD A 306 1555 1555 2.33 LINK OD2 ASP A 82 CD CD A 306 1555 1555 2.41 LINK OE1 GLU A 87 CD CD A 305 1555 1555 2.58 LINK OE2 GLU A 87 CD CD A 305 1555 1555 2.70 LINK OE2 GLU A 183 CD CD A 305 1555 1555 2.31 LINK OE1 GLU A 183 CD CD A 305 1555 1555 2.54 LINK CA CA A 301 O HOH A 410 1555 1555 2.22 LINK CA CA A 301 O HOH A 423 1555 1555 2.37 LINK MN MN A 302 O HOH A 477 1555 1555 2.30 LINK MN MN A 302 O HOH A 478 1555 1555 2.20 LINK CD CD A 305 O HOH A 421 1555 1555 2.32 LINK CD CD A 305 O HOH A 456 1555 1555 2.27 CISPEP 1 ALA A 207 ASP A 208 0 -11.86 CRYST1 63.422 65.152 106.708 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009371 0.00000