PDB Short entry for 4LAD HEADER LIGASE/LIGASE 19-JUN-13 4LAD TITLE CRYSTAL STRUCTURE OF THE UBE2G2:RING-G2BR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 G2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN CARRIER PROTEIN G2, UBIQUITIN-PROTEIN LIGASE G2; COMPND 5 EC: 6.3.2.19; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE AMFR; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RING REGION (UNP RESIDUES 313-393) AND G2BR REGION (UNP COMPND 11 RESIDUES 574-600); COMPND 12 SYNONYM: AUTOCRINE MOTILITY FACTOR RECEPTOR, AMF RECEPTOR, RING COMPND 13 FINGER PROTEIN 45, GP78; COMPND 14 EC: 6.3.2.-; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2G2, UBIQUITIN-CONJUGATING ENZYME E2G2 ISOFORM 1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(STAR); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: AMFR, AUTOCRINE MOTILITY FACTOR RECEPTOR, RNF45; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(STAR); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS E2:E3 COMPLEX, LIGASE-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-H.LIANG,J.LI,R.DAS,R.A.BYRD,X.JI REVDAT 6 20-SEP-23 4LAD 1 REMARK REVDAT 5 30-AUG-23 4LAD 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 15-NOV-17 4LAD 1 REMARK REVDAT 3 02-AUG-17 4LAD 1 SOURCE REMARK REVDAT 2 25-SEP-13 4LAD 1 JRNL REVDAT 1 28-AUG-13 4LAD 0 JRNL AUTH R.DAS,Y.H.LIANG,J.MARIANO,J.LI,T.HUANG,A.KING,S.G.TARASOV, JRNL AUTH 2 A.M.WEISSMAN,X.JI,R.A.BYRD JRNL TITL ALLOSTERIC REGULATION OF E2:E3 INTERACTIONS PROMOTE A JRNL TITL 2 PROCESSIVE UBIQUITINATION MACHINE. JRNL REF EMBO J. V. 32 2504 2013 JRNL REFN ISSN 0261-4189 JRNL PMID 23942235 JRNL DOI 10.1038/EMBOJ.2013.174 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 12488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1291 - 4.3927 0.98 1805 157 0.1905 0.2186 REMARK 3 2 4.3927 - 3.4873 1.00 1708 149 0.1849 0.2658 REMARK 3 3 3.4873 - 3.0467 1.00 1676 146 0.2426 0.2772 REMARK 3 4 3.0467 - 2.7682 1.00 1653 143 0.2701 0.3313 REMARK 3 5 2.7682 - 2.5698 1.00 1671 145 0.2832 0.3904 REMARK 3 6 2.5698 - 2.4184 0.93 1530 134 0.2870 0.3614 REMARK 3 7 2.4184 - 2.3000 0.88 1445 126 0.3004 0.3746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 49.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.24500 REMARK 3 B22 (A**2) : 7.24500 REMARK 3 B33 (A**2) : -14.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1843 REMARK 3 ANGLE : 1.220 2489 REMARK 3 CHIRALITY : 0.083 262 REMARK 3 PLANARITY : 0.006 326 REMARK 3 DIHEDRAL : 19.349 703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3H8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-3350, 0.1M TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.21550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.12300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.12300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.60775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.12300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.12300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.82325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.12300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.12300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.60775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.12300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.12300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 118.82325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.21550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 97 REMARK 465 ASP A 98 REMARK 465 ASP A 99 REMARK 465 PRO A 100 REMARK 465 MET A 101 REMARK 465 GLY A 102 REMARK 465 TYR A 103 REMARK 465 GLU A 104 REMARK 465 SER A 105 REMARK 465 HIS B 311 REMARK 465 MET B 312 REMARK 465 LYS B 313 REMARK 465 ASN B 314 REMARK 465 TYR B 315 REMARK 465 LEU B 316 REMARK 465 ARG B 317 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 GLY B 320 REMARK 465 ASN B 321 REMARK 465 MET B 322 REMARK 465 GLU B 323 REMARK 465 ALA B 324 REMARK 465 ARG B 325 REMARK 465 PHE B 326 REMARK 465 ALA B 327 REMARK 465 VAL B 328 REMARK 465 ALA B 329 REMARK 465 THR B 330 REMARK 465 PRO B 331 REMARK 465 GLU B 332 REMARK 465 GLU B 333 REMARK 465 LEU B 334 REMARK 465 ALA B 335 REMARK 465 VAL B 336 REMARK 465 ASN B 337 REMARK 465 ASN B 338 REMARK 465 SER B 521 REMARK 465 LEU B 522 REMARK 465 ASN B 523 REMARK 465 ILE B 524 REMARK 465 ALA B 525 REMARK 465 ASP B 526 REMARK 465 ASN B 527 REMARK 465 ASN B 528 REMARK 465 ARG B 529 REMARK 465 VAL B 530 REMARK 465 ARG B 531 REMARK 465 GLU B 532 REMARK 465 GLU B 533 REMARK 465 GLY B 534 REMARK 465 GLY B 535 REMARK 465 GLY B 536 REMARK 465 GLY B 537 REMARK 465 GLY B 538 REMARK 465 GLY B 539 REMARK 465 GLY B 540 REMARK 465 SER B 541 REMARK 465 SER B 542 REMARK 465 GLY B 543 REMARK 465 SER B 544 REMARK 465 SER B 545 REMARK 465 GLY B 546 REMARK 465 GLY B 547 REMARK 465 SER B 548 REMARK 465 GLY B 549 REMARK 465 GLY B 550 REMARK 465 GLY B 551 REMARK 465 SER B 552 REMARK 465 GLY B 553 REMARK 465 SER B 554 REMARK 465 SER B 555 REMARK 465 SER B 556 REMARK 465 GLY B 557 REMARK 465 GLY B 558 REMARK 465 GLY B 559 REMARK 465 GLY B 560 REMARK 465 GLY B 561 REMARK 465 SER B 562 REMARK 465 GLY B 563 REMARK 465 GLY B 564 REMARK 465 GLY B 565 REMARK 465 SER B 566 REMARK 465 GLY B 567 REMARK 465 GLY B 568 REMARK 465 GLY B 569 REMARK 465 GLY B 570 REMARK 465 GLY B 571 REMARK 465 GLY B 572 REMARK 465 LYS B 600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 50 123.20 -34.83 REMARK 500 ASP A 85 32.31 -95.01 REMARK 500 ALA A 107 -139.58 -67.61 REMARK 500 ARG A 109 -178.00 -58.90 REMARK 500 PRO A 112 -7.04 -56.54 REMARK 500 GLU A 133 66.68 -104.83 REMARK 500 ASP A 147 67.36 -109.72 REMARK 500 ILE B 343 -75.59 -74.29 REMARK 500 TRP B 345 45.05 -100.44 REMARK 500 MET B 348 72.17 47.50 REMARK 500 CYS B 356 -6.86 -48.58 REMARK 500 ASP B 372 132.91 -172.28 REMARK 500 CYS B 378 -101.10 -113.43 REMARK 500 ARG B 379 -32.37 -146.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 356 SG REMARK 620 2 HIS B 358 ND1 122.9 REMARK 620 3 CYS B 375 SG 92.8 127.4 REMARK 620 4 CYS B 378 SG 90.9 129.1 81.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 361 ND1 REMARK 620 2 CYS B 364 SG 113.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXL B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXL B 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LXH RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE GP78 RING REMARK 900 RELATED ID: 2LXP RELATED DB: PDB REMARK 900 NMR-BASED DOCKING MODEL OF THE UBE2G2:RING:G2BR COMPLEX DBREF 4LAD A 1 165 UNP P60604 UB2G2_HUMAN 1 165 DBREF 4LAD B 313 533 UNP Q9UKV5 AMFR_HUMAN 313 393 DBREF 4LAD B 574 600 UNP Q9UKV5 AMFR_HUMAN 574 600 SEQADV 4LAD HIS B 311 UNP Q9UKV5 EXPRESSION TAG SEQADV 4LAD MET B 312 UNP Q9UKV5 EXPRESSION TAG SEQADV 4LAD GLY B 534 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 535 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 536 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 537 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 538 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 539 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 540 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 541 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 542 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 543 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 544 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 545 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 546 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 547 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 548 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 549 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 550 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 551 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 552 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 553 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 554 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 555 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 556 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 557 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 558 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 559 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 560 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 561 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 562 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 563 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 564 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 565 UNP Q9UKV5 LINKER SEQADV 4LAD SER B 566 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 567 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 568 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 569 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 570 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 571 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 572 UNP Q9UKV5 LINKER SEQADV 4LAD GLY B 573 UNP Q9UKV5 LINKER SEQRES 1 A 165 MET ALA GLY THR ALA LEU LYS ARG LEU MET ALA GLU TYR SEQRES 2 A 165 LYS GLN LEU THR LEU ASN PRO PRO GLU GLY ILE VAL ALA SEQRES 3 A 165 GLY PRO MET ASN GLU GLU ASN PHE PHE GLU TRP GLU ALA SEQRES 4 A 165 LEU ILE MET GLY PRO GLU ASP THR CYS PHE GLU PHE GLY SEQRES 5 A 165 VAL PHE PRO ALA ILE LEU SER PHE PRO LEU ASP TYR PRO SEQRES 6 A 165 LEU SER PRO PRO LYS MET ARG PHE THR CYS GLU MET PHE SEQRES 7 A 165 HIS PRO ASN ILE TYR PRO ASP GLY ARG VAL CYS ILE SER SEQRES 8 A 165 ILE LEU HIS ALA PRO GLY ASP ASP PRO MET GLY TYR GLU SEQRES 9 A 165 SER SER ALA GLU ARG TRP SER PRO VAL GLN SER VAL GLU SEQRES 10 A 165 LYS ILE LEU LEU SER VAL VAL SER MET LEU ALA GLU PRO SEQRES 11 A 165 ASN ASP GLU SER GLY ALA ASN VAL ASP ALA SER LYS MET SEQRES 12 A 165 TRP ARG ASP ASP ARG GLU GLN PHE TYR LYS ILE ALA LYS SEQRES 13 A 165 GLN ILE VAL GLN LYS SER LEU GLY LEU SEQRES 1 B 150 HIS MET LYS ASN TYR LEU ARG VAL VAL GLY ASN MET GLU SEQRES 2 B 150 ALA ARG PHE ALA VAL ALA THR PRO GLU GLU LEU ALA VAL SEQRES 3 B 150 ASN ASN ASP ASP CYS ALA ILE CYS TRP ASP SER MET GLN SEQRES 4 B 150 ALA ALA ARG LYS LEU PRO CYS GLY HIS LEU PHE HIS ASN SEQRES 5 B 150 SER CYS LEU ARG SER TRP LEU GLU GLN ASP THR SER CYS SEQRES 6 B 150 PRO THR CYS ARG MET SER LEU ASN ILE ALA ASP ASN ASN SEQRES 7 B 150 ARG VAL ARG GLU GLU GLY GLY GLY GLY GLY GLY GLY SER SEQRES 8 B 150 SER GLY SER SER GLY GLY SER GLY GLY GLY SER GLY SER SEQRES 9 B 150 SER SER GLY GLY GLY GLY GLY SER GLY GLY GLY SER GLY SEQRES 10 B 150 GLY GLY GLY GLY GLY GLY SER ALA ASP GLU ARG GLN ARG SEQRES 11 B 150 MET LEU VAL GLN ARG LYS ASP GLU LEU LEU GLN GLN ALA SEQRES 12 B 150 ARG LYS ARG PHE LEU ASN LYS HET ZN B 701 1 HET ZN B 702 1 HET OXL B 703 6 HET OXL B 704 6 HETNAM ZN ZINC ION HETNAM OXL OXALATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 OXL 2(C2 O4 2-) FORMUL 7 HOH *39(H2 O) HELIX 1 1 GLY A 3 ASN A 19 1 17 HELIX 2 2 ILE A 90 HIS A 94 5 5 HELIX 3 3 SER A 115 GLU A 129 1 15 HELIX 4 4 ASN A 137 ASP A 146 1 10 HELIX 5 5 ASP A 147 LEU A 163 1 17 HELIX 6 6 ASN B 362 GLU B 370 1 9 HELIX 7 7 SER B 574 LEU B 598 1 25 SHEET 1 A 4 ILE A 24 PRO A 28 0 SHEET 2 A 4 GLU A 36 MET A 42 -1 O LEU A 40 N VAL A 25 SHEET 3 A 4 VAL A 53 SER A 59 -1 O PHE A 54 N ILE A 41 SHEET 4 A 4 LYS A 70 PHE A 73 -1 O LYS A 70 N SER A 59 SHEET 1 B 2 ALA B 351 LYS B 353 0 SHEET 2 B 2 LEU B 359 HIS B 361 -1 O PHE B 360 N ARG B 352 LINK SG CYS B 356 ZN ZN B 702 1555 1555 2.53 LINK ND1 HIS B 358 ZN ZN B 702 1555 1555 2.32 LINK ND1 HIS B 361 ZN ZN B 701 1555 1555 2.35 LINK SG CYS B 364 ZN ZN B 701 1555 1555 2.41 LINK SG CYS B 375 ZN ZN B 702 1555 1555 2.42 LINK SG CYS B 378 ZN ZN B 702 1555 1555 2.49 CISPEP 1 TYR A 64 PRO A 65 0 1.25 SITE 1 AC1 4 CYS B 341 CYS B 344 HIS B 361 CYS B 364 SITE 1 AC2 4 CYS B 356 HIS B 358 CYS B 375 CYS B 378 SITE 1 AC3 1 ASP B 340 SITE 1 AC4 1 HOH B 812 CRYST1 58.246 58.246 158.431 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017169 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006312 0.00000