PDB Short entry for 4LAE HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 19-JUN-13 4LAE TITLE STRUCTURE-BASED DESIGN OF NEW DIHYDROFOLATE REDUCTASE ANTIBACTERIAL TITLE 2 AGENTS: 7-(BENZIMIDAZOL-1-YL)-2,4-DIAMINOQUINAZOLINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: FOLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DHFR, PROTEIN-INHIBITOR COMPLEX, FOLATE, NADPH, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.T.HILGERS REVDAT 3 28-FEB-24 4LAE 1 REMARK SEQADV REVDAT 2 26-FEB-14 4LAE 1 JRNL REVDAT 1 19-FEB-14 4LAE 0 JRNL AUTH T.LAM,M.T.HILGERS,M.L.CUNNINGHAM,B.P.KWAN,K.J.NELSON, JRNL AUTH 2 V.BROWN-DRIVER,V.ONG,M.TRZOSS,G.HOUGH,K.J.SHAW,J.FINN JRNL TITL STRUCTURE-BASED DESIGN OF NEW DIHYDROFOLATE REDUCTASE JRNL TITL 2 ANTIBACTERIAL AGENTS: JRNL TITL 3 7-(BENZIMIDAZOL-1-YL)-2,4-DIAMINOQUINAZOLINES. JRNL REF J.MED.CHEM. V. 57 651 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 24428639 JRNL DOI 10.1021/JM401204G REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1305 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.4340 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.5270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1390 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1900 ; 1.652 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 5.998 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;34.928 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 226 ;11.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1041 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 599 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 936 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 803 ; 0.429 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1282 ; 0.701 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 705 ; 1.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 618 ; 1.724 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 2 X 20 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2850 24.5700 -8.6220 REMARK 3 T TENSOR REMARK 3 T11: -0.0013 T22: -0.0676 REMARK 3 T33: -0.0912 T12: -0.0149 REMARK 3 T13: 0.0583 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.5777 L22: 1.8922 REMARK 3 L33: 2.1929 L12: 0.5648 REMARK 3 L13: 0.2892 L23: -0.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.0235 S13: -0.0664 REMARK 3 S21: 0.1231 S22: -0.0174 S23: -0.0218 REMARK 3 S31: -0.2244 S32: -0.0361 S33: -0.0170 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 21 X 57 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7390 33.9070 -3.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: -0.0604 REMARK 3 T33: -0.0176 T12: 0.0151 REMARK 3 T13: 0.1190 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.0949 L22: 1.7759 REMARK 3 L33: 1.1037 L12: 1.1722 REMARK 3 L13: 0.2018 L23: -0.3054 REMARK 3 S TENSOR REMARK 3 S11: 0.1301 S12: -0.0918 S13: 0.2177 REMARK 3 S21: 0.2513 S22: -0.0498 S23: 0.3259 REMARK 3 S31: -0.3960 S32: -0.0758 S33: -0.0804 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 58 X 85 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5790 37.6540 4.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.2406 T22: -0.0425 REMARK 3 T33: -0.1235 T12: -0.1262 REMARK 3 T13: 0.0364 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 4.2484 L22: 4.4943 REMARK 3 L33: 1.6004 L12: 3.0692 REMARK 3 L13: -1.4241 L23: -1.6437 REMARK 3 S TENSOR REMARK 3 S11: 0.4096 S12: -0.3530 S13: 0.2041 REMARK 3 S21: 1.0210 S22: -0.3974 S23: -0.0746 REMARK 3 S31: -0.1927 S32: 0.1364 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 86 X 123 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2500 23.9790 -3.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.0192 T22: -0.0720 REMARK 3 T33: -0.0889 T12: -0.0194 REMARK 3 T13: 0.0379 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.6071 L22: 1.4318 REMARK 3 L33: 2.0317 L12: 0.9523 REMARK 3 L13: -0.3560 L23: 0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: -0.1436 S13: -0.1096 REMARK 3 S21: 0.2234 S22: -0.0507 S23: -0.0975 REMARK 3 S31: -0.2180 S32: 0.0300 S33: -0.0759 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 124 X 130 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8990 13.2030 -4.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: -0.0625 REMARK 3 T33: -0.0408 T12: -0.0025 REMARK 3 T13: 0.0521 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 8.0445 L22: 15.6356 REMARK 3 L33: 9.7667 L12: -1.2649 REMARK 3 L13: -2.0811 L23: -6.7298 REMARK 3 S TENSOR REMARK 3 S11: -0.3354 S12: -0.2342 S13: -0.8690 REMARK 3 S21: 0.0848 S22: 0.2054 S23: -0.1595 REMARK 3 S31: 0.7509 S32: -0.0613 S33: 0.1300 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 131 X 158 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7780 18.5930 -3.7150 REMARK 3 T TENSOR REMARK 3 T11: -0.0478 T22: -0.0821 REMARK 3 T33: -0.1251 T12: 0.0100 REMARK 3 T13: 0.0534 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 4.0019 L22: 3.1600 REMARK 3 L33: 7.8025 L12: -0.4569 REMARK 3 L13: 2.6469 L23: -3.2146 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0059 S13: 0.0521 REMARK 3 S21: 0.0363 S22: 0.0934 S23: 0.0154 REMARK 3 S31: -0.1572 S32: -0.2745 S33: -0.0807 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 201 X 201 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8350 31.5970 -6.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: -0.0433 REMARK 3 T33: -0.0540 T12: -0.0637 REMARK 3 T13: 0.0448 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.5235 L22: 3.3150 REMARK 3 L33: 2.2142 L12: 0.8162 REMARK 3 L13: -1.0006 L23: -0.7754 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.0814 S13: 0.0220 REMARK 3 S21: 0.1792 S22: -0.1057 S23: -0.0653 REMARK 3 S31: -0.1778 S32: 0.1490 S33: 0.0643 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.70133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.40267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.55200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.25333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.85067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.70133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.40267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 89.25333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.55200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 17.85067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 LYS X 159 REMARK 465 LEU X 160 REMARK 465 GLU X 161 REMARK 465 HIS X 162 REMARK 465 HIS X 163 REMARK 465 HIS X 164 REMARK 465 HIS X 165 REMARK 465 HIS X 166 REMARK 465 HIS X 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG X 59 NE ARG X 59 CZ 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 59 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG X 59 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 39 -155.47 -116.16 REMARK 500 ASN X 70 82.72 -155.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP X 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1VM X 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LAG RELATED DB: PDB REMARK 900 RELATED ID: 4LAH RELATED DB: PDB REMARK 900 RELATED ID: 4LEK RELATED DB: PDB DBREF 4LAE X 1 159 UNP P0A017 DYR_STAAU 1 159 SEQADV 4LAE LEU X 160 UNP P0A017 EXPRESSION TAG SEQADV 4LAE GLU X 161 UNP P0A017 EXPRESSION TAG SEQADV 4LAE HIS X 162 UNP P0A017 EXPRESSION TAG SEQADV 4LAE HIS X 163 UNP P0A017 EXPRESSION TAG SEQADV 4LAE HIS X 164 UNP P0A017 EXPRESSION TAG SEQADV 4LAE HIS X 165 UNP P0A017 EXPRESSION TAG SEQADV 4LAE HIS X 166 UNP P0A017 EXPRESSION TAG SEQADV 4LAE HIS X 167 UNP P0A017 EXPRESSION TAG SEQRES 1 X 167 MET THR LEU SER ILE LEU VAL ALA HIS ASP LEU GLN ARG SEQRES 2 X 167 VAL ILE GLY PHE GLU ASN GLN LEU PRO TRP HIS LEU PRO SEQRES 3 X 167 ASN ASP LEU LYS HIS VAL LYS LYS LEU SER THR GLY HIS SEQRES 4 X 167 THR LEU VAL MET GLY ARG LYS THR PHE GLU SER ILE GLY SEQRES 5 X 167 LYS PRO LEU PRO ASN ARG ARG ASN VAL VAL LEU THR SER SEQRES 6 X 167 ASP THR SER PHE ASN VAL GLU GLY VAL ASP VAL ILE HIS SEQRES 7 X 167 SER ILE GLU ASP ILE TYR GLN LEU PRO GLY HIS VAL PHE SEQRES 8 X 167 ILE PHE GLY GLY GLN THR LEU PHE GLU GLU MET ILE ASP SEQRES 9 X 167 LYS VAL ASP ASP MET TYR ILE THR VAL ILE GLU GLY LYS SEQRES 10 X 167 PHE ARG GLY ASP THR PHE PHE PRO PRO TYR THR PHE GLU SEQRES 11 X 167 ASP TRP GLU VAL ALA SER SER VAL GLU GLY LYS LEU ASP SEQRES 12 X 167 GLU LYS ASN THR ILE PRO HIS THR PHE LEU HIS LEU ILE SEQRES 13 X 167 ARG LYS LYS LEU GLU HIS HIS HIS HIS HIS HIS HET NAP X 201 48 HET 1VM X 202 28 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM 1VM 7-[5,6-DIMETHYL-2-(1,3-THIAZOL-2-YL)-1H-BENZIMIDAZOL-1- HETNAM 2 1VM YL]QUINAZOLINE-2,4-DIAMINE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 1VM C20 H17 N7 S FORMUL 4 HOH *118(H2 O) HELIX 1 1 LEU X 25 THR X 37 1 13 HELIX 2 2 ARG X 45 GLY X 52 1 8 HELIX 3 3 SER X 79 LEU X 86 5 8 HELIX 4 4 GLY X 95 ILE X 103 1 9 SHEET 1 A 8 ASP X 75 ILE X 77 0 SHEET 2 A 8 ARG X 59 LEU X 63 1 N ASN X 60 O ASP X 75 SHEET 3 A 8 THR X 40 GLY X 44 1 N LEU X 41 O VAL X 61 SHEET 4 A 8 VAL X 90 GLY X 94 1 O PHE X 91 N THR X 40 SHEET 5 A 8 LEU X 3 ASP X 10 1 N SER X 4 O ILE X 92 SHEET 6 A 8 ASP X 108 ILE X 114 1 O TYR X 110 N ILE X 5 SHEET 7 A 8 HIS X 150 ARG X 157 -1 O LEU X 153 N ILE X 111 SHEET 8 A 8 TRP X 132 GLU X 139 -1 N GLU X 133 O ILE X 156 SHEET 1 B 2 VAL X 14 GLY X 16 0 SHEET 2 B 2 THR X 122 PHE X 123 -1 O THR X 122 N ILE X 15 CISPEP 1 GLY X 94 GLY X 95 0 1.17 SITE 1 AC1 31 VAL X 7 ALA X 8 ILE X 15 GLY X 16 SITE 2 AC1 31 ASN X 19 GLN X 20 LEU X 21 GLY X 44 SITE 3 AC1 31 ARG X 45 LYS X 46 THR X 47 LEU X 63 SITE 4 AC1 31 THR X 64 SER X 65 HIS X 78 ILE X 80 SITE 5 AC1 31 PHE X 93 GLY X 95 GLN X 96 THR X 97 SITE 6 AC1 31 LEU X 98 GLU X 101 THR X 122 1VM X 202 SITE 7 AC1 31 HOH X 312 HOH X 337 HOH X 353 HOH X 356 SITE 8 AC1 31 HOH X 371 HOH X 389 HOH X 390 SITE 1 AC2 11 LEU X 6 VAL X 7 ALA X 8 GLN X 20 SITE 2 AC2 11 LEU X 21 ASP X 28 LEU X 29 VAL X 32 SITE 3 AC2 11 PHE X 93 NAP X 201 HOH X 385 CRYST1 79.360 79.360 107.104 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012601 0.007275 0.000000 0.00000 SCALE2 0.000000 0.014550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009337 0.00000