PDB Short entry for 4LIJ HEADER RNA BINDING PROTEIN 02-JUL-13 4LIJ TITLE CRYSTAL STRUCTURE OF A FAR UPSTREAM ELEMENT (FUSE) BINDING PROTEIN 1 TITLE 2 (FUBP1) FROM HOMO SAPIENS AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAR UPSTREAM ELEMENT-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 86-174; COMPND 5 SYNONYM: FBP, FUSE-BINDING PROTEIN 1, DNA HELICASE V, HDH V; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BC017247, FUBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS KH DOMAIN, PF00013, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, RNA- KEYWDS 3 BINDING PROTEIN, PARTNERSHIP FOR T-CELL BIOLOGY, TCELL, RNA BINDING KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR T-CELL AUTHOR 2 BIOLOGY,PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) REVDAT 3 01-FEB-23 4LIJ 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4LIJ 1 KEYWDS REMARK REVDAT 1 27-NOV-13 4LIJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), JRNL AUTH 2 PARTNERSHIP FOR T-CELL BIOLOGY JRNL TITL CRYSTAL STRUCTURE OF A FAR UPSTREAM ELEMENT (FUSE) BINDING JRNL TITL 2 PROTEIN 1 (FUBP1) FROM HOMO SAPIENS AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.2 REMARK 3 NUMBER OF REFLECTIONS : 24098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1228 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.119 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1891 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1883 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2561 ; 1.553 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4390 ; 1.251 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 4.972 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;41.485 ;24.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;13.151 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.672 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2180 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 397 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 955 ; 2.079 ; 2.078 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 954 ; 2.074 ; 2.067 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1200 ; 3.574 ; 3.803 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7620 -1.2530 11.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.0315 REMARK 3 T33: 0.0157 T12: -0.0032 REMARK 3 T13: -0.0135 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.2156 L22: 0.5324 REMARK 3 L33: 0.5540 L12: 0.2624 REMARK 3 L13: -0.1795 L23: -0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0306 S13: 0.0093 REMARK 3 S21: 0.0211 S22: -0.0132 S23: -0.0159 REMARK 3 S31: -0.0453 S32: 0.0254 S33: 0.0046 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0950 -18.3870 10.3050 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0152 REMARK 3 T33: 0.0302 T12: -0.0073 REMARK 3 T13: 0.0077 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.7488 L22: 0.3249 REMARK 3 L33: 0.5394 L12: -0.4569 REMARK 3 L13: 0.1185 L23: -0.2261 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.0467 S13: -0.0071 REMARK 3 S21: -0.0071 S22: 0.0403 S23: 0.0122 REMARK 3 S31: 0.0309 S32: -0.0414 S33: -0.0322 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 95 C 171 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1540 -21.9800 7.4160 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: 0.0396 REMARK 3 T33: 0.0055 T12: 0.0080 REMARK 3 T13: -0.0055 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.7867 L22: 0.5034 REMARK 3 L33: 0.1552 L12: -0.0627 REMARK 3 L13: -0.2157 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0009 S13: -0.0093 REMARK 3 S21: 0.0274 S22: 0.0001 S23: -0.0089 REMARK 3 S31: 0.0242 S32: 0.0280 S33: 0.0059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. PHOSPHATE (PO4) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION SOLUTION ARE MODELED. 7. DUE TO STRONG ICE RINGS, REMARK 3 REFLECTIONS WERE OMITTED IN THE 3.93-3.87, 3.70-3.64, 2.29-2.23, REMARK 3 AND 1.95-1.89 RESOLUTION SHELLS LOWERING THE OVERALL REMARK 3 COMPLETENESS TO 79.2%. THE NOMINAL RESOLUTION OF THE RESULTING REMARK 3 DATASET IS 1.95 A WITH 4124 OBSERVED REFLECTIONS BETWEEN 1.95- REMARK 3 1.80 (64.8% COMPLETE FOR THIS SHELL) INCLUDED IN THE REFINEMENT. REMARK 4 REMARK 4 4LIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537,0.9796,0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 61.384 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.92300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00% GLYCEROL, 1.60M AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, 0.1M TRIS PH 8.5, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.08500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.40500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.12750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.40500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.04250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.40500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.40500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.12750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.40500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.40500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.04250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.08500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 TRIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 B 700 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 251 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 275 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 280 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 86 REMARK 465 THR A 87 REMARK 465 GLN A 88 REMARK 465 LEU A 89 REMARK 465 PRO A 90 REMARK 465 PRO A 91 REMARK 465 MSE A 92 REMARK 465 HIS A 93 REMARK 465 GLN A 94 REMARK 465 GLN A 95 REMARK 465 GLN A 96 REMARK 465 PRO A 172 REMARK 465 ALA A 173 REMARK 465 PRO A 174 REMARK 465 GLY B 0 REMARK 465 GLY B 86 REMARK 465 THR B 87 REMARK 465 GLN B 88 REMARK 465 LEU B 89 REMARK 465 PRO B 90 REMARK 465 PRO B 91 REMARK 465 MSE B 92 REMARK 465 HIS B 93 REMARK 465 GLN B 94 REMARK 465 GLN B 95 REMARK 465 PRO B 172 REMARK 465 ALA B 173 REMARK 465 PRO B 174 REMARK 465 GLY C 0 REMARK 465 GLY C 86 REMARK 465 THR C 87 REMARK 465 GLN C 88 REMARK 465 LEU C 89 REMARK 465 PRO C 90 REMARK 465 PRO C 91 REMARK 465 MSE C 92 REMARK 465 HIS C 93 REMARK 465 GLN C 94 REMARK 465 PRO C 172 REMARK 465 ALA C 173 REMARK 465 PRO C 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 120 O HOH A 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-422637 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 86-174 OF THE TARGET REMARK 999 SEQUENCE - ISOFORM 2 OF FUSE-BINDING PROTEIN 1, UNIPROT ENTRY REMARK 999 Q96AE4-2. DBREF 4LIJ A 86 174 UNP Q96AE4 FUBP1_HUMAN 86 174 DBREF 4LIJ B 86 174 UNP Q96AE4 FUBP1_HUMAN 86 174 DBREF 4LIJ C 86 174 UNP Q96AE4 FUBP1_HUMAN 86 174 SEQADV 4LIJ GLY A 0 UNP Q96AE4 EXPRESSION TAG SEQADV 4LIJ GLY B 0 UNP Q96AE4 EXPRESSION TAG SEQADV 4LIJ GLY C 0 UNP Q96AE4 EXPRESSION TAG SEQRES 1 A 90 GLY GLY THR GLN LEU PRO PRO MSE HIS GLN GLN GLN ARG SEQRES 2 A 90 SER VAL MSE THR GLU GLU TYR LYS VAL PRO ASP GLY MSE SEQRES 3 A 90 VAL GLY PHE ILE ILE GLY ARG GLY GLY GLU GLN ILE SER SEQRES 4 A 90 ARG ILE GLN GLN GLU SER GLY CYS LYS ILE GLN ILE ALA SEQRES 5 A 90 PRO ASP SER GLY GLY LEU PRO GLU ARG SER CYS MSE LEU SEQRES 6 A 90 THR GLY THR PRO GLU SER VAL GLN SER ALA LYS ARG LEU SEQRES 7 A 90 LEU ASP GLN ILE VAL GLU LYS GLY ARG PRO ALA PRO SEQRES 1 B 90 GLY GLY THR GLN LEU PRO PRO MSE HIS GLN GLN GLN ARG SEQRES 2 B 90 SER VAL MSE THR GLU GLU TYR LYS VAL PRO ASP GLY MSE SEQRES 3 B 90 VAL GLY PHE ILE ILE GLY ARG GLY GLY GLU GLN ILE SER SEQRES 4 B 90 ARG ILE GLN GLN GLU SER GLY CYS LYS ILE GLN ILE ALA SEQRES 5 B 90 PRO ASP SER GLY GLY LEU PRO GLU ARG SER CYS MSE LEU SEQRES 6 B 90 THR GLY THR PRO GLU SER VAL GLN SER ALA LYS ARG LEU SEQRES 7 B 90 LEU ASP GLN ILE VAL GLU LYS GLY ARG PRO ALA PRO SEQRES 1 C 90 GLY GLY THR GLN LEU PRO PRO MSE HIS GLN GLN GLN ARG SEQRES 2 C 90 SER VAL MSE THR GLU GLU TYR LYS VAL PRO ASP GLY MSE SEQRES 3 C 90 VAL GLY PHE ILE ILE GLY ARG GLY GLY GLU GLN ILE SER SEQRES 4 C 90 ARG ILE GLN GLN GLU SER GLY CYS LYS ILE GLN ILE ALA SEQRES 5 C 90 PRO ASP SER GLY GLY LEU PRO GLU ARG SER CYS MSE LEU SEQRES 6 C 90 THR GLY THR PRO GLU SER VAL GLN SER ALA LYS ARG LEU SEQRES 7 C 90 LEU ASP GLN ILE VAL GLU LYS GLY ARG PRO ALA PRO MODRES 4LIJ MSE A 100 MET SELENOMETHIONINE MODRES 4LIJ MSE A 110 MET SELENOMETHIONINE MODRES 4LIJ MSE A 148 MET SELENOMETHIONINE MODRES 4LIJ MSE B 100 MET SELENOMETHIONINE MODRES 4LIJ MSE B 110 MET SELENOMETHIONINE MODRES 4LIJ MSE B 148 MET SELENOMETHIONINE MODRES 4LIJ MSE C 100 MET SELENOMETHIONINE MODRES 4LIJ MSE C 110 MET SELENOMETHIONINE MODRES 4LIJ MSE C 148 MET SELENOMETHIONINE HET MSE A 100 13 HET MSE A 110 13 HET MSE A 148 8 HET MSE B 100 8 HET MSE B 110 13 HET MSE B 148 8 HET MSE C 100 8 HET MSE C 110 13 HET MSE C 148 8 HET PO4 B 700 5 HET PO4 B 701 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 HOH *320(H2 O) HELIX 1 1 MSE A 110 GLY A 116 1 7 HELIX 2 2 GLY A 119 GLY A 130 1 12 HELIX 3 3 THR A 152 GLU A 168 1 17 HELIX 4 4 MSE B 110 GLY B 116 1 7 HELIX 5 5 GLY B 119 GLY B 130 1 12 HELIX 6 6 THR B 152 GLU B 168 1 17 HELIX 7 7 MSE C 110 GLY C 116 1 7 HELIX 8 8 GLY C 119 GLY C 130 1 12 HELIX 9 9 THR C 152 GLU C 168 1 17 SHEET 1 A 3 MSE A 100 PRO A 107 0 SHEET 2 A 3 GLU A 144 GLY A 151 -1 O ARG A 145 N VAL A 106 SHEET 3 A 3 LYS A 132 ILE A 135 -1 N LYS A 132 O THR A 150 SHEET 1 B 3 MSE B 100 PRO B 107 0 SHEET 2 B 3 GLU B 144 GLY B 151 -1 O ARG B 145 N VAL B 106 SHEET 3 B 3 LYS B 132 ILE B 135 -1 N GLN B 134 O MSE B 148 SHEET 1 C 3 MSE C 100 PRO C 107 0 SHEET 2 C 3 GLU C 144 GLY C 151 -1 O ARG C 145 N VAL C 106 SHEET 3 C 3 LYS C 132 ILE C 135 -1 N LYS C 132 O THR C 150 LINK C VAL A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N THR A 101 1555 1555 1.33 LINK C GLY A 109 N MSE A 110 1555 1555 1.34 LINK C MSE A 110 N VAL A 111 1555 1555 1.34 LINK C CYS A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N LEU A 149 1555 1555 1.33 LINK C VAL B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N THR B 101 1555 1555 1.33 LINK C GLY B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N VAL B 111 1555 1555 1.33 LINK C CYS B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N LEU B 149 1555 1555 1.34 LINK C VAL C 99 N MSE C 100 1555 1555 1.33 LINK C MSE C 100 N THR C 101 1555 1555 1.32 LINK C GLY C 109 N MSE C 110 1555 1555 1.34 LINK C MSE C 110 N VAL C 111 1555 1555 1.34 LINK C CYS C 147 N MSE C 148 1555 1555 1.32 LINK C MSE C 148 N LEU C 149 1555 1555 1.34 SITE 1 AC1 3 GLN B 134 HOH B 806 HOH B 879 SITE 1 AC2 6 GLY B 116 ARG B 117 GLU B 120 GLN B 121 SITE 2 AC2 6 HOH B 872 HOH B 883 CRYST1 86.810 86.810 84.170 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011881 0.00000