PDB Short entry for 4LL8 HEADER MOTOR PROTEIN/TRANSPORT PROTEIN 09-JUL-13 4LL8 TITLE COMPLEX OF CARBOXY TERMINAL DOMAIN OF MYO4P AND SHE3P MIDDLE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP P32492 RESIDUES 918-1073, 1089-1471; COMPND 5 SYNONYM: SWI5-DEPENDENT HO EXPRESSION PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SWI5-DEPENDENT HO EXPRESSION PROTEIN 3; COMPND 10 CHAIN: E, B; COMPND 11 FRAGMENT: UNP P38272 RESIDUES 81-311; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: MYO4, SHE1, YAL029C, FUN22; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 559292; SOURCE 13 STRAIN: ATCC 204508 / S288C; SOURCE 14 GENE: SHE3, YBR130C, YBR1005; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYO4P, SHE3P, MYOSIN MOTOR-ADAPTOR COMPLEX, MRNA TRANSLOCATION, MOTOR KEYWDS 2 PROTEIN-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.SHI,N.SINGH,F.ESSELBORN,G.BLOBEL REVDAT 3 23-AUG-17 4LL8 1 SOURCE REMARK REVDAT 2 21-MAY-14 4LL8 1 JRNL REVDAT 1 12-FEB-14 4LL8 0 JRNL AUTH H.SHI,N.SINGH,F.ESSELBORN,G.BLOBEL JRNL TITL STRUCTURE OF A MYOSINBULLETADAPTOR COMPLEX AND PAIRING BY JRNL TITL 2 CARGO. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E1082 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24522109 JRNL DOI 10.1073/PNAS.1401428111 REMARK 2 REMARK 2 RESOLUTION. 3.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2522.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 75.5 REMARK 3 NUMBER OF REFLECTIONS : 14616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 768 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE : 0.4587 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 52 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 37.71000 REMARK 3 B22 (A**2) : -3.62100 REMARK 3 B33 (A**2) : -34.08900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.773 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 10.750; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 9.107 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 13.605; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 36.53 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18820 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.578 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH 7.0, 8% TACSIMATE, 12% REMARK 280 (W/V) PEG 3350, 0.01M DTT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 136.00650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.05800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 136.00650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.05800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 918 REMARK 465 TYR A 919 REMARK 465 ILE A 920 REMARK 465 VAL A 921 REMARK 465 LEU A 922 REMARK 465 GLN A 923 REMARK 465 LYS A 924 REMARK 465 GLU A 925 REMARK 465 VAL A 926 REMARK 465 GLU A 927 REMARK 465 GLU A 928 REMARK 465 ARG A 929 REMARK 465 ASN A 930 REMARK 465 ILE A 931 REMARK 465 ARG A 932 REMARK 465 ALA A 933 REMARK 465 SER A 934 REMARK 465 TYR A 935 REMARK 465 GLY A 936 REMARK 465 ILE A 937 REMARK 465 GLY A 938 REMARK 465 LEU A 939 REMARK 465 LEU A 940 REMARK 465 GLU A 941 REMARK 465 GLU A 942 REMARK 465 ALA A 943 REMARK 465 ILE A 944 REMARK 465 GLU A 945 REMARK 465 PHE A 946 REMARK 465 LYS A 947 REMARK 465 ASN A 948 REMARK 465 SER A 949 REMARK 465 PHE A 950 REMARK 465 ILE A 951 REMARK 465 LEU A 952 REMARK 465 ASN A 953 REMARK 465 LEU A 954 REMARK 465 GLU A 955 REMARK 465 MET A 956 REMARK 465 LEU A 957 REMARK 465 ASN A 958 REMARK 465 ASP A 959 REMARK 465 SER A 960 REMARK 465 TYR A 961 REMARK 465 THR A 962 REMARK 465 ARG A 963 REMARK 465 LEU A 964 REMARK 465 THR A 965 REMARK 465 GLN A 966 REMARK 465 LEU A 967 REMARK 465 LEU A 968 REMARK 465 GLN A 969 REMARK 465 GLY A 970 REMARK 465 ASP A 971 REMARK 465 LEU A 972 REMARK 465 SER A 973 REMARK 465 ASN A 974 REMARK 465 ILE A 975 REMARK 465 PRO A 976 REMARK 465 SER A 977 REMARK 465 LYS A 978 REMARK 465 GLN A 979 REMARK 465 ARG A 980 REMARK 465 GLN A 981 REMARK 465 GLU A 982 REMARK 465 TYR A 983 REMARK 465 GLU A 984 REMARK 465 THR A 985 REMARK 465 ILE A 986 REMARK 465 VAL A 987 REMARK 465 ASN A 988 REMARK 465 GLY A 989 REMARK 465 TYR A 990 REMARK 465 ASN A 991 REMARK 465 ASP A 992 REMARK 465 LYS A 993 REMARK 465 ILE A 994 REMARK 465 SER A 995 REMARK 465 LYS A 996 REMARK 465 LEU A 997 REMARK 465 LYS A 998 REMARK 465 THR A 999 REMARK 465 LEU A 1000 REMARK 465 GLN A 1001 REMARK 465 VAL A 1002 REMARK 465 GLU A 1003 REMARK 465 ILE A 1004 REMARK 465 MET A 1005 REMARK 465 ASN A 1006 REMARK 465 THR A 1007 REMARK 465 LEU A 1008 REMARK 465 ASN A 1009 REMARK 465 LYS A 1010 REMARK 465 LYS A 1011 REMARK 465 ASN A 1012 REMARK 465 ALA A 1013 REMARK 465 LEU A 1014 REMARK 465 LYS A 1015 REMARK 465 ILE A 1035 REMARK 465 LYS A 1036 REMARK 465 GLY A 1037 REMARK 465 ASP A 1078 REMARK 465 PHE A 1079 REMARK 465 THR A 1080 REMARK 465 THR A 1081 REMARK 465 THR A 1082 REMARK 465 TYR A 1083 REMARK 465 SER A 1084 REMARK 465 ASP A 1469 REMARK 465 ARG A 1470 REMARK 465 LYS A 1471 REMARK 465 MET E 56 REMARK 465 TYR E 176 REMARK 465 GLY E 177 REMARK 465 SER E 178 REMARK 465 ASP E 179 REMARK 465 THR E 180 REMARK 465 SER E 181 REMARK 465 SER E 182 REMARK 465 ASN E 183 REMARK 465 SER E 184 REMARK 465 ASP E 185 REMARK 465 ILE E 186 REMARK 465 GLU E 187 REMARK 465 LEU E 188 REMARK 465 ASN E 189 REMARK 465 LEU E 190 REMARK 465 ASN E 191 REMARK 465 LYS E 192 REMARK 465 PHE E 193 REMARK 465 ASN E 194 REMARK 465 ASP E 195 REMARK 465 SER E 196 REMARK 465 VAL E 197 REMARK 465 LYS E 198 REMARK 465 ASP E 199 REMARK 465 LEU E 200 REMARK 465 LYS E 201 REMARK 465 SER E 202 REMARK 465 LEU E 203 REMARK 465 GLU E 204 REMARK 465 THR E 205 REMARK 465 GLU E 206 REMARK 465 LYS E 207 REMARK 465 ASP E 208 REMARK 465 SER E 209 REMARK 465 LYS E 210 REMARK 465 LEU E 211 REMARK 465 SER E 212 REMARK 465 LYS E 213 REMARK 465 ILE E 214 REMARK 465 ILE E 215 REMARK 465 THR E 216 REMARK 465 HIS E 217 REMARK 465 SER E 218 REMARK 465 LEU E 219 REMARK 465 ASP E 220 REMARK 465 GLU E 221 REMARK 465 LEU E 222 REMARK 465 ASN E 223 REMARK 465 LEU E 224 REMARK 465 GLN E 225 REMARK 465 SER E 226 REMARK 465 TRP E 227 REMARK 465 LEU E 228 REMARK 465 ASN E 229 REMARK 465 LEU E 230 REMARK 465 TYR E 231 REMARK 465 GLN E 232 REMARK 465 THR E 233 REMARK 465 ASN E 234 REMARK 465 GLU E 235 REMARK 465 ASN E 236 REMARK 465 LEU E 237 REMARK 465 ILE E 238 REMARK 465 SER E 239 REMARK 465 THR E 240 REMARK 465 PHE E 241 REMARK 465 ALA E 242 REMARK 465 GLU E 243 REMARK 465 LYS E 244 REMARK 465 MET E 245 REMARK 465 ASP E 246 REMARK 465 LEU E 247 REMARK 465 LYS E 248 REMARK 465 ASP E 249 REMARK 465 VAL E 250 REMARK 465 LEU E 251 REMARK 465 LYS E 252 REMARK 465 ARG E 253 REMARK 465 ASN E 254 REMARK 465 ASP E 255 REMARK 465 GLU E 256 REMARK 465 LYS E 257 REMARK 465 ILE E 258 REMARK 465 SER E 259 REMARK 465 ASN E 260 REMARK 465 LYS E 261 REMARK 465 GLY E 262 REMARK 465 ALA E 263 REMARK 465 VAL E 264 REMARK 465 VAL E 265 REMARK 465 GLN E 266 REMARK 465 THR E 267 REMARK 465 LEU E 268 REMARK 465 LYS E 269 REMARK 465 LYS E 270 REMARK 465 ASN E 271 REMARK 465 VAL E 272 REMARK 465 GLN E 273 REMARK 465 THR E 274 REMARK 465 GLN E 275 REMARK 465 VAL E 276 REMARK 465 GLU E 277 REMARK 465 SER E 278 REMARK 465 ASN E 279 REMARK 465 ASN E 280 REMARK 465 ALA E 281 REMARK 465 ASP E 282 REMARK 465 ALA E 283 REMARK 465 LEU E 284 REMARK 465 SER E 285 REMARK 465 SER E 286 REMARK 465 ASN E 287 REMARK 465 ASN E 288 REMARK 465 ALA E 289 REMARK 465 GLN E 290 REMARK 465 MET B 56 REMARK 465 GLU B 57 REMARK 465 HIS B 58 REMARK 465 GLN B 172 REMARK 465 ASN B 173 REMARK 465 LEU B 174 REMARK 465 ASN B 175 REMARK 465 TYR B 176 REMARK 465 GLY B 177 REMARK 465 SER B 178 REMARK 465 ASP B 179 REMARK 465 THR B 180 REMARK 465 SER B 181 REMARK 465 SER B 182 REMARK 465 ASN B 183 REMARK 465 SER B 184 REMARK 465 ASP B 185 REMARK 465 ILE B 186 REMARK 465 GLU B 187 REMARK 465 LEU B 188 REMARK 465 ASN B 189 REMARK 465 LEU B 190 REMARK 465 ASN B 191 REMARK 465 LYS B 192 REMARK 465 PHE B 193 REMARK 465 ASN B 194 REMARK 465 ASP B 195 REMARK 465 SER B 196 REMARK 465 VAL B 197 REMARK 465 LYS B 198 REMARK 465 ASP B 199 REMARK 465 LEU B 200 REMARK 465 LYS B 201 REMARK 465 SER B 202 REMARK 465 LEU B 203 REMARK 465 GLU B 204 REMARK 465 THR B 205 REMARK 465 GLU B 206 REMARK 465 LYS B 207 REMARK 465 ASP B 208 REMARK 465 SER B 209 REMARK 465 LYS B 210 REMARK 465 LEU B 211 REMARK 465 SER B 212 REMARK 465 LYS B 213 REMARK 465 ILE B 214 REMARK 465 ILE B 215 REMARK 465 THR B 216 REMARK 465 HIS B 217 REMARK 465 SER B 218 REMARK 465 LEU B 219 REMARK 465 ASP B 220 REMARK 465 GLU B 221 REMARK 465 LEU B 222 REMARK 465 ASN B 223 REMARK 465 LEU B 224 REMARK 465 GLN B 225 REMARK 465 SER B 226 REMARK 465 TRP B 227 REMARK 465 LEU B 228 REMARK 465 ASN B 229 REMARK 465 LEU B 230 REMARK 465 TYR B 231 REMARK 465 GLN B 232 REMARK 465 THR B 233 REMARK 465 ASN B 234 REMARK 465 GLU B 235 REMARK 465 ASN B 236 REMARK 465 LEU B 237 REMARK 465 ILE B 238 REMARK 465 SER B 239 REMARK 465 THR B 240 REMARK 465 PHE B 241 REMARK 465 ALA B 242 REMARK 465 GLU B 243 REMARK 465 LYS B 244 REMARK 465 MET B 245 REMARK 465 ASP B 246 REMARK 465 LEU B 247 REMARK 465 LYS B 248 REMARK 465 ASP B 249 REMARK 465 VAL B 250 REMARK 465 LEU B 251 REMARK 465 LYS B 252 REMARK 465 ARG B 253 REMARK 465 ASN B 254 REMARK 465 ASP B 255 REMARK 465 GLU B 256 REMARK 465 LYS B 257 REMARK 465 ILE B 258 REMARK 465 SER B 259 REMARK 465 ASN B 260 REMARK 465 LYS B 261 REMARK 465 GLY B 262 REMARK 465 ALA B 263 REMARK 465 VAL B 264 REMARK 465 VAL B 265 REMARK 465 GLN B 266 REMARK 465 THR B 267 REMARK 465 LEU B 268 REMARK 465 LYS B 269 REMARK 465 LYS B 270 REMARK 465 ASN B 271 REMARK 465 VAL B 272 REMARK 465 GLN B 273 REMARK 465 THR B 274 REMARK 465 GLN B 275 REMARK 465 VAL B 276 REMARK 465 GLU B 277 REMARK 465 SER B 278 REMARK 465 ASN B 279 REMARK 465 ASN B 280 REMARK 465 ALA B 281 REMARK 465 ASP B 282 REMARK 465 ALA B 283 REMARK 465 LEU B 284 REMARK 465 SER B 285 REMARK 465 SER B 286 REMARK 465 ASN B 287 REMARK 465 ASN B 288 REMARK 465 ALA B 289 REMARK 465 GLN B 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU E 57 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A1320 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1018 0.16 -57.66 REMARK 500 SER A1027 -12.07 -47.30 REMARK 500 MET A1029 0.87 -62.87 REMARK 500 ALA A1033 -91.68 -87.63 REMARK 500 PRO A1040 54.16 -63.77 REMARK 500 SER A1041 146.56 -36.63 REMARK 500 ALA A1062 42.35 -104.28 REMARK 500 ASN A1086 -44.41 159.46 REMARK 500 LYS A1087 90.02 -160.80 REMARK 500 ARG A1095 -130.30 -82.21 REMARK 500 ARG A1096 -120.93 110.31 REMARK 500 GLU A1097 160.95 -22.87 REMARK 500 SER A1098 65.08 2.54 REMARK 500 MET A1109 17.63 -51.51 REMARK 500 ASN A1112 -33.14 -29.48 REMARK 500 THR A1115 -75.54 -57.55 REMARK 500 THR A1119 -92.56 -51.23 REMARK 500 TYR A1122 -46.10 -136.08 REMARK 500 VAL A1126 123.63 -38.54 REMARK 500 THR A1129 -1.38 -55.79 REMARK 500 GLU A1130 77.57 -155.29 REMARK 500 ASN A1132 -23.46 -33.02 REMARK 500 ASP A1134 -76.75 -64.39 REMARK 500 THR A1144 -75.48 -66.36 REMARK 500 THR A1145 -59.00 -19.87 REMARK 500 SER A1148 -74.03 -56.36 REMARK 500 LEU A1155 50.53 -110.86 REMARK 500 ILE A1157 16.17 -61.97 REMARK 500 PHE A1162 -72.48 -37.93 REMARK 500 SER A1172 -70.07 -50.17 REMARK 500 MET A1175 28.99 -71.75 REMARK 500 SER A1176 -66.18 -131.23 REMARK 500 LEU A1177 135.83 -1.01 REMARK 500 GLU A1181 46.35 -72.39 REMARK 500 MET A1183 -88.09 -82.90 REMARK 500 ILE A1187 -67.10 -18.99 REMARK 500 PHE A1199 40.20 -73.37 REMARK 500 ALA A1200 -58.24 -133.97 REMARK 500 GLU A1208 -78.92 -76.84 REMARK 500 ALA A1209 -4.43 -47.99 REMARK 500 ASN A1210 -87.48 -61.78 REMARK 500 ASP A1213 -5.20 -47.44 REMARK 500 GLU A1214 -58.10 -130.61 REMARK 500 LYS A1215 32.44 -85.13 REMARK 500 ASP A1216 -58.41 -140.23 REMARK 500 GLU A1227 -37.98 -38.90 REMARK 500 GLU A1229 -0.62 -59.00 REMARK 500 LYS A1232 -72.68 -50.39 REMARK 500 LYS A1247 -72.22 -51.73 REMARK 500 LEU A1260 51.89 -147.67 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LL6 RELATED DB: PDB REMARK 900 RELATED ID: 4LL7 RELATED DB: PDB DBREF 4LL8 A 918 1087 UNP P32492 MYO4_YEAST 918 1073 DBREF 4LL8 A 1088 1471 UNP P32492 MYO4_YEAST 1089 1471 DBREF 4LL8 E 60 290 UNP P38272 SHE3_YEAST 81 311 DBREF 4LL8 B 60 290 UNP P38272 SHE3_YEAST 81 311 SEQADV 4LL8 ALA A 1018 UNP P32492 LYS 1018 ENGINEERED MUTATION SEQADV 4LL8 ALA A 1019 UNP P32492 LYS 1019 ENGINEERED MUTATION SEQADV 4LL8 ALA A 1020 UNP P32492 LYS 1020 ENGINEERED MUTATION SEQADV 4LL8 SER A 1113 UNP P32492 CYS 1113 ENGINEERED MUTATION SEQADV 4LL8 SER A 1288 UNP P32492 CYS 1288 ENGINEERED MUTATION SEQADV 4LL8 SER A 1320 UNP P32492 CYS 1320 ENGINEERED MUTATION SEQADV 4LL8 MET E 56 UNP P38272 EXPRESSION TAG SEQADV 4LL8 GLU E 57 UNP P38272 EXPRESSION TAG SEQADV 4LL8 HIS E 58 UNP P38272 EXPRESSION TAG SEQADV 4LL8 MET E 59 UNP P38272 EXPRESSION TAG SEQADV 4LL8 MET B 56 UNP P38272 EXPRESSION TAG SEQADV 4LL8 GLU B 57 UNP P38272 EXPRESSION TAG SEQADV 4LL8 HIS B 58 UNP P38272 EXPRESSION TAG SEQADV 4LL8 MET B 59 UNP P38272 EXPRESSION TAG SEQRES 1 A 539 ARG TYR ILE VAL LEU GLN LYS GLU VAL GLU GLU ARG ASN SEQRES 2 A 539 ILE ARG ALA SER TYR GLY ILE GLY LEU LEU GLU GLU ALA SEQRES 3 A 539 ILE GLU PHE LYS ASN SER PHE ILE LEU ASN LEU GLU MET SEQRES 4 A 539 LEU ASN ASP SER TYR THR ARG LEU THR GLN LEU LEU GLN SEQRES 5 A 539 GLY ASP LEU SER ASN ILE PRO SER LYS GLN ARG GLN GLU SEQRES 6 A 539 TYR GLU THR ILE VAL ASN GLY TYR ASN ASP LYS ILE SER SEQRES 7 A 539 LYS LEU LYS THR LEU GLN VAL GLU ILE MET ASN THR LEU SEQRES 8 A 539 ASN LYS LYS ASN ALA LEU LYS GLU ARG ALA ALA ALA GLN SEQRES 9 A 539 SER SER LEU ILE GLN SER HIS MET GLN SER LEU ALA ALA SEQRES 10 A 539 ILE LYS GLY ASN LYS PRO SER ARG LEU SER ASP GLU VAL SEQRES 11 A 539 LYS SER MET LYS GLN GLU LEU ALA PHE ILE GLU ASN VAL SEQRES 12 A 539 ILE ALA GLN ASP PHE THR THR THR TYR SER ALA ASN LYS SEQRES 13 A 539 PRO LYS LEU VAL ASN VAL ILE ARG ARG GLU SER GLY ASN SEQRES 14 A 539 PRO ASP LEU LEU GLU LEU LEU MET ASP LEU ASN SER TYR SEQRES 15 A 539 THR LEU GLU VAL THR GLU GLY TYR LEU LYS LYS VAL ASN SEQRES 16 A 539 VAL THR GLU VAL ASN GLY ASP ASN VAL LEU GLY PRO ILE SEQRES 17 A 539 HIS VAL ILE THR THR VAL VAL SER SER LEU VAL ARG ASN SEQRES 18 A 539 GLY LEU LEU ILE GLN SER SER LYS PHE ILE SER LYS VAL SEQRES 19 A 539 LEU LEU THR VAL GLU SER ILE VAL MET SER LEU PRO LYS SEQRES 20 A 539 ASP GLU THR MET LEU GLY GLY ILE PHE TRP LEU SER ASN SEQRES 21 A 539 LEU SER ARG LEU PRO ALA PHE ALA ALA ASN GLN LYS THR SEQRES 22 A 539 LEU TYR GLU ALA ASN GLY GLY ASP GLU LYS ASP LYS LEU SEQRES 23 A 539 THR LEU ILE TYR LEU ASN ASP LEU GLU ASN GLU THR LEU SEQRES 24 A 539 LYS VAL PHE ASP LYS ILE TYR SER THR TRP LEU VAL LYS SEQRES 25 A 539 PHE MET LYS HIS ALA SER ALA HIS ILE GLU ILE PHE ASP SEQRES 26 A 539 MET VAL LEU ASN GLU LYS LEU PHE LYS ASN SER GLY ASP SEQRES 27 A 539 GLU LYS PHE ALA LYS LEU PHE THR PHE LEU ASN GLU PHE SEQRES 28 A 539 ASP ALA VAL LEU SER LYS PHE GLN VAL VAL ASP SER MET SEQRES 29 A 539 HIS THR LYS ILE PHE ASN ASP THR LEU LYS TYR LEU ASN SEQRES 30 A 539 VAL MET LEU PHE ASN ASP LEU ILE THR LYS SER PRO ALA SEQRES 31 A 539 LEU ASN TRP LYS TYR GLY TYR GLU VAL ASP ARG ASN ILE SEQRES 32 A 539 GLU ARG LEU VAL SER TRP PHE GLU PRO ARG ILE GLU ASP SEQRES 33 A 539 VAL ARG PRO ASN LEU ILE GLN ILE ILE GLN ALA VAL LYS SEQRES 34 A 539 ILE LEU GLN LEU LYS ILE SER ASN LEU ASN GLU PHE LYS SEQRES 35 A 539 LEU LEU PHE ASP PHE TRP TYR ALA LEU ASN PRO ALA GLN SEQRES 36 A 539 ILE GLN ALA ILE LEU LEU LYS TYR LYS PRO ALA ASN LYS SEQRES 37 A 539 GLY GLU ALA GLY VAL PRO ASN GLU ILE LEU ASN TYR LEU SEQRES 38 A 539 ALA ASN VAL ILE LYS ARG GLU ASN LEU SER LEU PRO GLY SEQRES 39 A 539 LYS MET GLU ILE MET LEU SER ALA GLN PHE ASP SER ALA SEQRES 40 A 539 LYS ASN HIS LEU ARG TYR ASP THR SER ALA ILE THR GLN SEQRES 41 A 539 ASN SER ASN THR GLU GLY LEU ALA THR VAL SER LYS ILE SEQRES 42 A 539 ILE LYS LEU ASP ARG LYS SEQRES 1 E 235 MET GLU HIS MET GLU SER LYS LEU LEU GLU ASN LEU ASN SEQRES 2 E 235 LEU LEU LYS ASN GLU ASN GLU ASN LEU ASN SER ILE PHE SEQRES 3 E 235 GLU ARG LYS ASN LYS LYS LEU LYS GLU LEU GLU LYS ASP SEQRES 4 E 235 TYR SER GLU LEU SER ASN ARG TYR ASN GLU GLN LYS GLU SEQRES 5 E 235 LYS MET ASP GLN LEU SER LYS LEU ALA LYS ASN SER SER SEQRES 6 E 235 ALA ILE GLU GLN SER CYS SER GLU LYS LEU GLN ASN MET SEQRES 7 E 235 GLU VAL ASN TYR ASN SER LEU LEU GLU SER GLN ASN LEU SEQRES 8 E 235 TYR ARG ASP HIS TYR SER ASP GLU ILE SER LYS LEU ASN SEQRES 9 E 235 GLU LYS ILE GLY LEU LEU GLU LEU GLU LEU SER ASN GLN SEQRES 10 E 235 ASN LEU ASN TYR GLY SER ASP THR SER SER ASN SER ASP SEQRES 11 E 235 ILE GLU LEU ASN LEU ASN LYS PHE ASN ASP SER VAL LYS SEQRES 12 E 235 ASP LEU LYS SER LEU GLU THR GLU LYS ASP SER LYS LEU SEQRES 13 E 235 SER LYS ILE ILE THR HIS SER LEU ASP GLU LEU ASN LEU SEQRES 14 E 235 GLN SER TRP LEU ASN LEU TYR GLN THR ASN GLU ASN LEU SEQRES 15 E 235 ILE SER THR PHE ALA GLU LYS MET ASP LEU LYS ASP VAL SEQRES 16 E 235 LEU LYS ARG ASN ASP GLU LYS ILE SER ASN LYS GLY ALA SEQRES 17 E 235 VAL VAL GLN THR LEU LYS LYS ASN VAL GLN THR GLN VAL SEQRES 18 E 235 GLU SER ASN ASN ALA ASP ALA LEU SER SER ASN ASN ALA SEQRES 19 E 235 GLN SEQRES 1 B 235 MET GLU HIS MET GLU SER LYS LEU LEU GLU ASN LEU ASN SEQRES 2 B 235 LEU LEU LYS ASN GLU ASN GLU ASN LEU ASN SER ILE PHE SEQRES 3 B 235 GLU ARG LYS ASN LYS LYS LEU LYS GLU LEU GLU LYS ASP SEQRES 4 B 235 TYR SER GLU LEU SER ASN ARG TYR ASN GLU GLN LYS GLU SEQRES 5 B 235 LYS MET ASP GLN LEU SER LYS LEU ALA LYS ASN SER SER SEQRES 6 B 235 ALA ILE GLU GLN SER CYS SER GLU LYS LEU GLN ASN MET SEQRES 7 B 235 GLU VAL ASN TYR ASN SER LEU LEU GLU SER GLN ASN LEU SEQRES 8 B 235 TYR ARG ASP HIS TYR SER ASP GLU ILE SER LYS LEU ASN SEQRES 9 B 235 GLU LYS ILE GLY LEU LEU GLU LEU GLU LEU SER ASN GLN SEQRES 10 B 235 ASN LEU ASN TYR GLY SER ASP THR SER SER ASN SER ASP SEQRES 11 B 235 ILE GLU LEU ASN LEU ASN LYS PHE ASN ASP SER VAL LYS SEQRES 12 B 235 ASP LEU LYS SER LEU GLU THR GLU LYS ASP SER LYS LEU SEQRES 13 B 235 SER LYS ILE ILE THR HIS SER LEU ASP GLU LEU ASN LEU SEQRES 14 B 235 GLN SER TRP LEU ASN LEU TYR GLN THR ASN GLU ASN LEU SEQRES 15 B 235 ILE SER THR PHE ALA GLU LYS MET ASP LEU LYS ASP VAL SEQRES 16 B 235 LEU LYS ARG ASN ASP GLU LYS ILE SER ASN LYS GLY ALA SEQRES 17 B 235 VAL VAL GLN THR LEU LYS LYS ASN VAL GLN THR GLN VAL SEQRES 18 B 235 GLU SER ASN ASN ALA ASP ALA LEU SER SER ASN ASN ALA SEQRES 19 B 235 GLN HELIX 1 1 GLU A 1016 ALA A 1020 5 5 HELIX 2 2 GLN A 1021 GLN A 1030 1 10 HELIX 3 3 ARG A 1042 VAL A 1060 1 19 HELIX 4 4 ASP A 1103 MET A 1109 1 7 HELIX 5 5 ASP A 1110 GLU A 1120 1 11 HELIX 6 6 ASN A 1127 VAL A 1131 5 5 HELIX 7 7 LEU A 1137 ASN A 1153 1 17 HELIX 8 8 LEU A 1155 MET A 1175 1 21 HELIX 9 9 GLY A 1185 ARG A 1195 1 11 HELIX 10 10 PRO A 1197 ALA A 1209 1 13 HELIX 11 11 ASP A 1216 GLU A 1254 1 39 HELIX 12 12 GLU A 1254 LEU A 1260 1 7 HELIX 13 13 SER A 1268 PHE A 1290 1 23 HELIX 14 14 VAL A 1293 LEU A 1316 1 24 HELIX 15 15 ASN A 1324 TRP A 1341 1 18 HELIX 16 16 LEU A 1353 GLN A 1364 1 12 HELIX 17 17 ASN A 1369 PHE A 1377 1 9 HELIX 18 18 ASN A 1384 LEU A 1392 1 9 HELIX 19 19 PRO A 1406 SER A 1423 1 18 HELIX 20 20 ALA A 1439 LEU A 1443 5 5 HELIX 21 21 ASP A 1446 ASN A 1453 1 8 HELIX 22 22 GLY A 1458 ILE A 1466 1 9 HELIX 23 23 GLU E 60 LYS E 87 1 28 HELIX 24 24 LYS E 87 ASN E 171 1 85 HELIX 25 25 LEU B 64 LEU B 98 1 35 HELIX 26 26 ASN B 100 LEU B 112 1 13 HELIX 27 27 SER B 113 SER B 119 1 7 HELIX 28 28 ALA B 121 SER B 170 1 50 SSBOND 1 CYS E 126 CYS B 126 1555 1555 2.04 CISPEP 1 SER A 1320 PRO A 1321 0 -0.15 CRYST1 272.013 38.116 183.991 90.00 125.24 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003676 0.000000 0.002597 0.00000 SCALE2 0.000000 0.026236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006655 0.00000