PDB Short entry for 4LOX HEADER HYDROLASE/DNA 14-JUL-13 4LOX TITLE CRYSTAL STRUCTURE OF THE I-SMAMI LAGLIDADG HOMING ENDONUCLEASE BOUND TITLE 2 TO CLEAVED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAGLIDADG HOMING ENDONUCLEASE I-SMAMI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LHE HOMING ENDNUCLEASE, UNP RESIDUES 114-415; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*GP*TP*AP*CP*AP*CP*CP*TP*GP*AP*TP*AP*A)-3'); COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: PRODUCT OF LHE CLEAVAGE; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*TP*GP*GP*AP*GP*GP*AP*TP*AP*CP*C)-3'); COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: PRODUCT OF LHE CLEAVAGE; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (5'-D(*GP*GP*TP*AP*TP*CP*CP*TP*CP*CP*AP*TP*TP*AP*T)- COMPND 18 3'); COMPND 19 CHAIN: D; COMPND 20 FRAGMENT: PRODUCT OF LHE CLEAVAGE; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: DNA (5'-D(P*CP*AP*GP*GP*TP*GP*TP*AP*CP*G)-3'); COMPND 24 CHAIN: E; COMPND 25 FRAGMENT: PRODUCT OF LHE CLEAVAGE; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORDARIA MACROSPORA; SOURCE 3 ORGANISM_TAXID: 771870; SOURCE 4 STRAIN: ATCC MYA-333 / DSM 997 / K(L3346) / K-HELL; SOURCE 5 GENE: CYTOCHROME C OXIDASE SUBUNIT 1, MITOCHONDRIAL INTRONE ENCODED, SOURCE 6 SMAC_12671; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3), IRL+; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 MOL_ID: 5; SOURCE 19 SYNTHETIC: YES KEYWDS LHE, HOMING ENDONUCLEASE, PROTEIN-DNA COMPLEX, ENDONUCLEASE, DNA KEYWDS 2 BINDING, MITOCHRODRIAL, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.CHIK,B.SHEN,B.STODDARD REVDAT 2 20-SEP-23 4LOX 1 REMARK SEQADV LINK REVDAT 1 24-SEP-14 4LOX 0 JRNL AUTH J.CHIK,B.SHEN,B.STODDARD JRNL TITL CRYSTAL STRUCTURE OF A LAGLIDADG ENDONUCLEASE FROM THE JRNL TITL 2 SORDARIA MACROSPORE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 25028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2391 REMARK 3 NUCLEIC ACID ATOMS : 1021 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.56000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : -2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.836 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3592 ; 0.013 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5052 ; 1.691 ; 1.697 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 6.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;36.231 ;24.300 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;18.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2324 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3592 ; 3.343 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 35 ;24.822 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3500 ;10.729 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1130 1.5290 -0.8350 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.2030 REMARK 3 T33: 0.1948 T12: 0.0255 REMARK 3 T13: 0.0044 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.6119 L22: 2.4008 REMARK 3 L33: 1.7517 L12: 0.4005 REMARK 3 L13: -0.2337 L23: -1.4801 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0379 S13: -0.0185 REMARK 3 S21: -0.0422 S22: -0.0165 S23: -0.0172 REMARK 3 S31: 0.1122 S32: 0.0878 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 14 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4030 12.4030 -17.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.3053 REMARK 3 T33: 0.2504 T12: -0.0293 REMARK 3 T13: 0.0372 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.7533 L22: 6.4343 REMARK 3 L33: 5.8953 L12: -0.1635 REMARK 3 L13: 1.0790 L23: -3.4916 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: 0.0664 S13: -0.3026 REMARK 3 S21: -0.2558 S22: -0.2133 S23: -0.4058 REMARK 3 S31: 0.3871 S32: 0.6077 S33: 0.1235 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 15 C 25 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4780 -11.7460 17.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.2972 REMARK 3 T33: 0.3142 T12: -0.0143 REMARK 3 T13: -0.0264 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.8531 L22: 5.8122 REMARK 3 L33: 11.0114 L12: -0.1107 REMARK 3 L13: -1.4492 L23: -4.5546 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: -0.5088 S13: -0.0451 REMARK 3 S21: 0.5080 S22: -0.0535 S23: 0.0109 REMARK 3 S31: 0.3005 S32: 0.5248 S33: -0.0946 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 15 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1120 -9.8490 13.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.4215 REMARK 3 T33: 0.2929 T12: 0.0485 REMARK 3 T13: 0.0121 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.7771 L22: 4.0552 REMARK 3 L33: 8.6525 L12: -0.1455 REMARK 3 L13: 0.8748 L23: -4.8350 REMARK 3 S TENSOR REMARK 3 S11: 0.1561 S12: -0.1381 S13: 0.0467 REMARK 3 S21: 0.1498 S22: -0.2554 S23: -0.0736 REMARK 3 S31: 0.0254 S32: 1.0569 S33: 0.0993 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 16 E 25 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8150 14.8390 -21.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.4095 REMARK 3 T33: 0.3422 T12: -0.0825 REMARK 3 T13: 0.0304 T23: 0.1561 REMARK 3 L TENSOR REMARK 3 L11: 9.3226 L22: 7.3005 REMARK 3 L33: 12.0874 L12: 4.9309 REMARK 3 L13: -3.2450 L23: -7.1364 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: 0.0610 S13: 0.0140 REMARK 3 S21: -0.3632 S22: -0.9264 S23: -0.5922 REMARK 3 S31: -0.6056 S32: 2.0027 S33: 0.9745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2012 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.920 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: PDB ENTRY 3QQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG550 MME, 50MM MAGNESIUM REMARK 280 CHLORIDE, 0.1M TRISHCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.64200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.04500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.71450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.04500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.64200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.71450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DA B 14 P OP1 OP2 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 20 O3' DA B 14 1.46 REMARK 500 N6 DA B 13 O4 DT D 13 1.93 REMARK 500 OP2 DG E 18 O HOH E 103 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 15 P DT C 15 OP3 -0.110 REMARK 500 DC E 16 P DC E 16 OP3 -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 27 O - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 DC B 5 O5' - P - OP1 ANGL. DEV. = 9.0 DEGREES REMARK 500 DC B 5 O5' - P - OP2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 104.16 -167.34 REMARK 500 PHE A 62 34.18 -88.46 REMARK 500 ASN A 139 -126.01 50.90 REMARK 500 ASN A 163 68.54 34.85 REMARK 500 ASP A 168 146.88 -170.62 REMARK 500 ASN A 298 -123.53 45.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 19 O REMARK 620 2 ASP A 179 OD2 97.6 REMARK 620 3 ASP A 179 OD1 96.1 47.2 REMARK 620 4 HOH A 501 O 84.3 83.0 129.9 REMARK 620 5 DT C 15 OP1 92.1 120.7 73.8 156.3 REMARK 620 6 DT D 15 OP1 168.3 88.8 95.5 86.8 93.0 REMARK 620 7 HOH D 101 O 88.6 165.0 146.0 84.1 72.4 83.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE2 REMARK 620 2 GLY A 178 O 71.5 REMARK 620 3 ASP A 179 OD1 83.3 76.3 REMARK 620 4 DT C 15 OP2 111.1 155.4 128.1 REMARK 620 5 DT C 15 OP1 88.6 146.8 75.2 56.5 REMARK 620 6 DT D 15 O3' 166.9 106.0 83.6 76.7 87.4 REMARK 620 7 DC E 16 OP3 105.2 70.7 140.6 85.4 141.8 85.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LQ0 RELATED DB: PDB DBREF 4LOX A 1 302 UNP F7WD42 F7WD42_SORMK 114 415 DBREF 4LOX B 1 14 PDB 4LOX 4LOX 1 14 DBREF 4LOX C 15 25 PDB 4LOX 4LOX 15 25 DBREF 4LOX D 1 15 PDB 4LOX 4LOX 1 15 DBREF 4LOX E 16 25 PDB 4LOX 4LOX 16 25 SEQADV 4LOX GLY A 6 UNP F7WD42 SER 119 CLONING ARTIFACT SEQRES 1 A 302 SER LYS GLY GLU ASN GLY LYS LEU ASN PRO TRP ALA VAL SEQRES 2 A 302 VAL GLY PHE ILE ASP ALA GLU GLY SER PHE MET VAL ARG SEQRES 3 A 302 VAL ARG LYS ASN SER LYS TYR LYS THR GLY TRP LEU VAL SEQRES 4 A 302 VAL ALA ILE PHE SER VAL THR VAL ASP LYS LYS ASP LEU SEQRES 5 A 302 PHE LEU LEU GLU SER LEU LYS THR PHE PHE GLY GLY LEU SEQRES 6 A 302 GLY SER ILE LYS LYS SER GLY ASN SER THR PHE SER TYR SEQRES 7 A 302 ARG ILE GLU SER SER GLU GLN LEU THR LYS ILE ILE LEU SEQRES 8 A 302 PRO PHE PHE ASP LYS TYR SER LEU ILE THR GLU LYS LEU SEQRES 9 A 302 GLY ASP TYR LEU LEU PHE LYS LYS VAL LEU GLU LEU MET SEQRES 10 A 302 GLY THR LYS GLU HIS LEU THR GLN ARG GLY LEU GLU LYS SEQRES 11 A 302 ILE VAL SER LEU LYS ALA SER ILE ASN LYS GLY LEU SER SEQRES 12 A 302 GLU GLU LEU GLN ALA ALA PHE PRO GLN CYS VAL PRO THR SEQRES 13 A 302 PRO ARG PRO GLU ILE ASN ASN LYS LEU ILE PRO ASP PRO SEQRES 14 A 302 PHE TRP LEU ALA GLY PHE VAL SER GLY ASP GLY SER PHE SEQRES 15 A 302 LYS SER ILE LEU LYS LYS SER GLU SER ILE LYS VAL GLY SEQRES 16 A 302 PHE GLN SER ILE LEU VAL PHE GLN ILE THR GLN HIS ALA SEQRES 17 A 302 ARG ASP VAL LYS LEU MET GLU SER LEU ILE SER TYR LEU SEQRES 18 A 302 GLY CYS GLY PHE ILE GLU LYS ASP SER ARG GLY PRO TRP SEQRES 19 A 302 LEU TYR TYR THR VAL THR ASN PHE SER ASP ILE GLN GLY SEQRES 20 A 302 LYS ILE ILE PRO PHE PHE HIS GLN TYR LYS ILE ILE GLY SEQRES 21 A 302 SER LYS TYR GLY ASP TYR MET ASP TRP CYS LYS ILE ALA SEQRES 22 A 302 LEU ILE MET GLN ASN LYS ASN HIS LEU THR PRO GLU GLY SEQRES 23 A 302 LEU ASN GLU ILE ARG ALA LEU LYS GLY GLY MET ASN LYS SEQRES 24 A 302 GLY ARG LEU SEQRES 1 B 14 DC DG DT DA DC DA DC DC DT DG DA DT DA SEQRES 2 B 14 DA SEQRES 1 C 11 DT DG DG DA DG DG DA DT DA DC DC SEQRES 1 D 15 DG DG DT DA DT DC DC DT DC DC DA DT DT SEQRES 2 D 15 DA DT SEQRES 1 E 10 DC DA DG DG DT DG DT DA DC DG HET MG A 401 1 HET MG A 402 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *116(H2 O) HELIX 1 1 ASN A 9 GLU A 20 1 12 HELIX 2 2 ASP A 51 PHE A 62 1 12 HELIX 3 3 SER A 82 ILE A 89 1 8 HELIX 4 4 ILE A 89 TYR A 97 1 9 HELIX 5 5 GLU A 102 THR A 119 1 18 HELIX 6 6 LYS A 120 LEU A 123 5 4 HELIX 7 7 THR A 124 ALA A 136 1 13 HELIX 8 8 SER A 143 PHE A 150 1 8 HELIX 9 9 ASP A 168 ASP A 179 1 12 HELIX 10 10 ASP A 210 GLY A 222 1 13 HELIX 11 11 ASN A 241 LYS A 248 1 8 HELIX 12 12 LYS A 248 TYR A 256 1 9 HELIX 13 13 SER A 261 ASN A 278 1 18 HELIX 14 14 LYS A 279 LEU A 282 5 4 HELIX 15 15 THR A 283 GLY A 296 1 14 HELIX 16 16 MET A 297 ARG A 301 5 5 SHEET 1 A 4 GLY A 21 LYS A 29 0 SHEET 2 A 4 TRP A 37 ASP A 48 -1 O LEU A 38 N ARG A 28 SHEET 3 A 4 THR A 75 ILE A 80 -1 O TYR A 78 N VAL A 45 SHEET 4 A 4 SER A 67 GLY A 72 -1 N LYS A 69 O SER A 77 SHEET 1 B 4 GLY A 180 LYS A 188 0 SHEET 2 B 4 PHE A 196 HIS A 207 -1 O ILE A 199 N ILE A 185 SHEET 3 B 4 TRP A 234 VAL A 239 -1 O TYR A 237 N ILE A 204 SHEET 4 B 4 PHE A 225 LYS A 228 -1 N PHE A 225 O THR A 238 LINK O ALA A 19 MG MG A 401 1555 1555 2.16 LINK OE2 GLU A 20 MG MG A 402 1555 1555 2.10 LINK O GLY A 178 MG MG A 402 1555 1555 2.88 LINK OD2 ASP A 179 MG MG A 401 1555 1555 2.32 LINK OD1 ASP A 179 MG MG A 401 1555 1555 2.96 LINK OD1 ASP A 179 MG MG A 402 1555 1555 2.19 LINK MG MG A 401 O HOH A 501 1555 1555 2.34 LINK MG MG A 401 OP1 DT C 15 1555 1555 2.05 LINK MG MG A 401 OP1 DT D 15 1555 1555 2.17 LINK MG MG A 401 O HOH D 101 1555 1555 2.14 LINK MG MG A 402 OP2 DT C 15 1555 1555 2.59 LINK MG MG A 402 OP1 DT C 15 1555 1555 2.81 LINK MG MG A 402 O3' DT D 15 1555 1555 2.41 LINK MG MG A 402 OP3 DC E 16 1555 1555 2.40 SITE 1 AC1 6 ALA A 19 ASP A 179 HOH A 501 DT C 15 SITE 2 AC1 6 DT D 15 HOH D 101 SITE 1 AC2 7 GLU A 20 GLY A 178 ASP A 179 DA B 14 SITE 2 AC2 7 DT C 15 DT D 15 DC E 16 CRYST1 61.284 67.429 98.090 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010195 0.00000