PDB Short entry for 4LZL HEADER TRANSCRIPTION 31-JUL-13 4LZL TITLE STRUCTURE OF THE INACTIVE FORM OF THE REGULATORY DOMAIN FROM THE TITLE 2 REPRESSOR OF IRON TRANSPORT REGULATOR (RITR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL REGULATORY DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE 2061617; SOURCE 3 ORGANISM_TAXID: 914130; SOURCE 4 STRAIN: G54; SOURCE 5 GENE: AMCSP02_000425, RITR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PE-SUMOKAN KEYWDS TWO-COMPONENT RESPONSE REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,L.HAN,A.T.ULIJASZ REVDAT 2 20-SEP-23 4LZL 1 REMARK REVDAT 1 17-SEP-14 4LZL 0 JRNL AUTH A.F.MAULE,J.J.WEINER,L.HAN,D.P.WRIGHT,F.C.PETERSON, JRNL AUTH 2 B.F.VOLKMAN,N.R.SILVAGGI,A.T.ULIJASZ JRNL TITL DEFINING THE ASPARTATE-LESS RECEIVER (ALR) DOMAINS: JRNL TITL 2 STRUCTURE AND ACTIVATION OF RITR FROM STREPTOCOCCUS JRNL TITL 3 PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 17288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3558 - 3.3333 0.94 1542 179 0.1397 0.1449 REMARK 3 2 3.3333 - 2.6465 0.97 1577 176 0.1404 0.1658 REMARK 3 3 2.6465 - 2.3121 0.96 1583 179 0.1422 0.1630 REMARK 3 4 2.3121 - 2.1008 0.95 1575 170 0.1358 0.1628 REMARK 3 5 2.1008 - 1.9503 0.95 1567 171 0.1408 0.1573 REMARK 3 6 1.9503 - 1.8353 0.95 1546 179 0.1381 0.1727 REMARK 3 7 1.8353 - 1.7434 0.94 1558 164 0.1486 0.1736 REMARK 3 8 1.7434 - 1.6676 0.94 1505 178 0.1515 0.1785 REMARK 3 9 1.6676 - 1.6034 0.93 1545 173 0.1422 0.1888 REMARK 3 10 1.6034 - 1.5480 0.93 1551 170 0.1450 0.1551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.40 REMARK 3 SHRINKAGE RADIUS : 0.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1137 REMARK 3 ANGLE : 1.204 1545 REMARK 3 CHIRALITY : 0.078 172 REMARK 3 PLANARITY : 0.005 202 REMARK 3 DIHEDRAL : 12.714 446 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 5:24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9150 32.3699 5.6513 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.0469 REMARK 3 T33: 0.0434 T12: -0.0022 REMARK 3 T13: -0.0176 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.7110 L22: 1.2998 REMARK 3 L33: 1.5445 L12: -1.0447 REMARK 3 L13: -0.6403 L23: 0.3399 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: 0.0394 S13: 0.1326 REMARK 3 S21: -0.0052 S22: -0.0453 S23: -0.1479 REMARK 3 S31: -0.0712 S32: 0.0278 S33: 0.0062 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 25:34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4943 33.5579 11.9568 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.1288 REMARK 3 T33: 0.1013 T12: -0.0166 REMARK 3 T13: -0.0093 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.8473 L22: 7.8825 REMARK 3 L33: 2.9763 L12: -1.9374 REMARK 3 L13: 0.3814 L23: -1.8667 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: -0.2439 S13: 0.3383 REMARK 3 S21: 0.0414 S22: -0.1294 S23: -0.1980 REMARK 3 S31: 0.0594 S32: 0.0783 S33: 0.0732 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 35:45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3910 24.9187 19.5532 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.1342 REMARK 3 T33: 0.0432 T12: 0.0036 REMARK 3 T13: -0.0143 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 4.1979 L22: 5.2298 REMARK 3 L33: 5.6853 L12: -1.9149 REMARK 3 L13: -0.8650 L23: 0.7977 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.3780 S13: 0.0529 REMARK 3 S21: 0.2470 S22: 0.0954 S23: -0.3113 REMARK 3 S31: 0.0795 S32: 0.4091 S33: 0.0175 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 46:52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2075 30.9338 11.8330 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.0399 REMARK 3 T33: -0.0424 T12: 0.0027 REMARK 3 T13: 0.0114 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.0234 L22: 3.4799 REMARK 3 L33: 3.5063 L12: 0.1496 REMARK 3 L13: 0.9604 L23: 0.9720 REMARK 3 S TENSOR REMARK 3 S11: -0.2687 S12: -0.2252 S13: 0.2981 REMARK 3 S21: 0.4613 S22: 0.0243 S23: 0.3369 REMARK 3 S31: -0.0262 S32: 0.1089 S33: -0.0857 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 53:60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4848 16.9797 8.1238 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.0547 REMARK 3 T33: 0.0663 T12: 0.0649 REMARK 3 T13: -0.0110 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 0.8391 L22: 2.1390 REMARK 3 L33: 3.8754 L12: -0.1575 REMARK 3 L13: -1.7240 L23: -0.3110 REMARK 3 S TENSOR REMARK 3 S11: -0.2309 S12: -0.3929 S13: -0.1734 REMARK 3 S21: 0.4823 S22: 0.1729 S23: -0.1528 REMARK 3 S31: 0.7031 S32: 0.5036 S33: 0.0970 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 61:70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2043 18.6065 14.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1041 REMARK 3 T33: 0.0487 T12: 0.0004 REMARK 3 T13: 0.0349 T23: 0.0719 REMARK 3 L TENSOR REMARK 3 L11: 3.6523 L22: 1.2000 REMARK 3 L33: 2.1783 L12: 0.2151 REMARK 3 L13: -2.8047 L23: -0.0928 REMARK 3 S TENSOR REMARK 3 S11: -0.2555 S12: -0.2469 S13: -0.4536 REMARK 3 S21: 0.2246 S22: 0.1100 S23: 0.0923 REMARK 3 S31: 0.5044 S32: -0.2487 S33: 0.0016 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 71:86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0650 23.6280 2.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0452 REMARK 3 T33: 0.0310 T12: -0.0227 REMARK 3 T13: -0.0073 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.2815 L22: 0.8830 REMARK 3 L33: 3.0389 L12: -0.0337 REMARK 3 L13: -0.5756 L23: -0.0108 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: -0.0335 S13: 0.0397 REMARK 3 S21: -0.0819 S22: 0.1384 S23: -0.0168 REMARK 3 S31: 0.2422 S32: 0.0626 S33: 0.0197 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 87:96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4551 17.8738 0.4873 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.0638 REMARK 3 T33: 0.0844 T12: -0.0270 REMARK 3 T13: 0.0098 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.1394 L22: 3.3714 REMARK 3 L33: 7.2618 L12: -0.6418 REMARK 3 L13: -2.4784 L23: 0.5864 REMARK 3 S TENSOR REMARK 3 S11: -0.3034 S12: 0.1273 S13: -0.4106 REMARK 3 S21: -0.0656 S22: -0.2156 S23: 0.3578 REMARK 3 S31: 0.6422 S32: -0.2110 S33: 0.1201 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 97:106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3826 27.5811 -2.9507 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.0594 REMARK 3 T33: 0.0269 T12: -0.0169 REMARK 3 T13: -0.0029 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.1476 L22: 0.1607 REMARK 3 L33: 1.5401 L12: 0.3064 REMARK 3 L13: -0.9962 L23: -0.1784 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0495 S13: 0.1359 REMARK 3 S21: -0.1223 S22: 0.0093 S23: 0.0503 REMARK 3 S31: -0.0940 S32: 0.1194 S33: -0.0332 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 107:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7683 37.7752 -0.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.0498 REMARK 3 T33: 0.1521 T12: -0.0074 REMARK 3 T13: 0.0153 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 5.8299 L22: 4.1170 REMARK 3 L33: 1.5758 L12: -2.2522 REMARK 3 L13: 0.6362 L23: 0.0370 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: 0.3514 S13: -0.0775 REMARK 3 S21: 0.0671 S22: 0.1377 S23: 0.5545 REMARK 3 S31: -0.0705 S32: -0.1494 S33: -0.0845 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 33.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MVO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1UL 5-10 MG/ML PROTEIN IN 10.0 MM BIS REMARK 280 -TRIS PROPANE, PH 7.5 PLUS 1UL OF 20-25% POLYETHYLENE GLYCOL REMARK 280 (PEG) 3350, 2.5 MM MAGNESIUM FORMATE, AND 20.0 MM TRIS, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 26 O HOH A 508 1.58 REMARK 500 O HOH A 583 O HOH A 585 2.04 REMARK 500 O HOH A 574 O HOH A 579 2.06 REMARK 500 O HOH A 516 O HOH A 541 2.11 REMARK 500 O HOH A 572 O HOH A 581 2.12 REMARK 500 O HOH A 554 O HOH A 572 2.14 REMARK 500 O HOH A 428 O HOH A 454 2.15 REMARK 500 OE1 GLU A 88 O HOH A 532 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 89 NH2 ARG A 121 1545 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 38.27 -85.40 REMARK 500 ASP A 122 38.27 -99.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 DBREF 4LZL A 1 124 UNP J1QDX6 J1QDX6_STREE 1 124 SEQRES 1 A 124 MET GLY LYS ARG ILE LEU LEU LEU GLU LYS GLU ARG ASN SEQRES 2 A 124 LEU ALA HIS PHE LEU SER LEU GLU LEU GLN LYS GLU GLN SEQRES 3 A 124 TYR ARG VAL ASP LEU VAL GLU GLU GLY GLN LYS ALA LEU SEQRES 4 A 124 SER MET ALA LEU GLN THR ASP TYR ASP LEU ILE LEU LEU SEQRES 5 A 124 ASN VAL ASN LEU GLY ASP MET MET ALA GLN ASP PHE ALA SEQRES 6 A 124 GLU LYS LEU SER ARG THR LYS PRO ALA SER VAL ILE MET SEQRES 7 A 124 ILE LEU ASP HIS TRP GLU ASP LEU GLN GLU GLU LEU GLU SEQRES 8 A 124 VAL VAL GLN ARG PHE ALA VAL SER TYR ILE TYR LYS PRO SEQRES 9 A 124 VAL LEU ILE GLU ASN LEU VAL ALA ARG ILE SER ALA ILE SEQRES 10 A 124 PHE ARG GLY ARG ASP PHE ILE HET GOL A 301 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *189(H2 O) HELIX 1 1 GLU A 11 GLU A 25 1 15 HELIX 2 2 GLU A 34 THR A 45 1 12 HELIX 3 3 MET A 60 SER A 69 1 10 HELIX 4 4 TRP A 83 GLU A 88 1 6 HELIX 5 5 GLU A 89 ALA A 97 1 9 HELIX 6 6 LEU A 106 ARG A 119 1 14 SHEET 1 A 5 ARG A 28 LEU A 31 0 SHEET 2 A 5 ARG A 4 LEU A 7 1 N ILE A 5 O ARG A 28 SHEET 3 A 5 LEU A 49 LEU A 52 1 O LEU A 51 N LEU A 6 SHEET 4 A 5 ILE A 77 HIS A 82 1 O MET A 78 N ILE A 50 SHEET 5 A 5 SER A 99 LYS A 103 1 O ILE A 101 N ILE A 79 CISPEP 1 LYS A 103 PRO A 104 0 -4.31 SITE 1 AC1 10 ARG A 12 GLU A 33 ALA A 65 SER A 69 SITE 2 AC1 10 LYS A 72 PRO A 73 ALA A 74 SER A 75 SITE 3 AC1 10 PHE A 96 HOH A 443 CRYST1 28.460 33.840 34.960 92.65 103.71 97.53 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035137 0.004645 0.008974 0.00000 SCALE2 0.000000 0.029808 0.002400 0.00000 SCALE3 0.000000 0.000000 0.029538 0.00000