PDB Short entry for 4MD4 HEADER IMMUNE SYSTEM 22-AUG-13 4MD4 TITLE IMMUNE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 26-206; COMPND 5 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-4 BETA CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 30-219; COMPND 11 SYNONYM: MHC CLASS II ANTIGEN DRB1*4, DR-4, DR4; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: AGGRECAN CORE PROTEIN; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: UNP RESIDUES 89-103; COMPND 17 SYNONYM: CARTILAGE-SPECIFIC PROTEOGLYCAN CORE PROTEIN, CSPCP, COMPND 18 CHONDROITIN SULFATE PROTEOGLYCAN CORE PROTEIN 1, CHONDROITIN SULFATE COMPND 19 PROTEOGLYCAN 1, AGGRECAN CORE PROTEIN 2; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HLA-DRB1; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 OTHER_DETAILS: THIS SEQUENCE IS FROM HUMAN AGGRECAN AND CONTAINS SOURCE 21 CITRULLINE AT POSITIONS 93 AND 95 KEYWDS HLA-DR, ANTIGEN PRESENTATION, T-CELL RECEPTOR, CITRULLINATION, KEYWDS 2 MEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.W.SCALLY,J.ROSSJOHN REVDAT 4 15-NOV-23 4MD4 1 HETSYN LINK ATOM REVDAT 3 29-JUL-20 4MD4 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 11-DEC-13 4MD4 1 JRNL REVDAT 1 04-DEC-13 4MD4 0 JRNL AUTH S.W.SCALLY,J.PETERSEN,S.C.LAW,N.L.DUDEK,H.J.NEL,K.L.LOH, JRNL AUTH 2 L.C.WIJEYEWICKREMA,S.B.ECKLE,J.VAN HEEMST,R.N.PIKE, JRNL AUTH 3 J.MCCLUSKEY,R.E.TOES,N.L.LA GRUTA,A.W.PURCELL,H.H.REID, JRNL AUTH 4 R.THOMAS,J.ROSSJOHN JRNL TITL A MOLECULAR BASIS FOR THE ASSOCIATION OF THE HLA-DRB1 LOCUS, JRNL TITL 2 CITRULLINATION, AND RHEUMATOID ARTHRITIS. JRNL REF J.EXP.MED. V. 210 2569 2013 JRNL REFN ISSN 0022-1007 JRNL PMID 24190431 JRNL DOI 10.1084/JEM.20131241 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 34283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0887 - 4.4631 1.00 2938 152 0.1457 0.1713 REMARK 3 2 4.4631 - 3.5429 1.00 2827 155 0.1319 0.1728 REMARK 3 3 3.5429 - 3.0952 1.00 2784 172 0.1569 0.1863 REMARK 3 4 3.0952 - 2.8123 1.00 2788 154 0.1772 0.2309 REMARK 3 5 2.8123 - 2.6107 1.00 2764 144 0.1801 0.2643 REMARK 3 6 2.6107 - 2.4568 1.00 2794 136 0.1763 0.2359 REMARK 3 7 2.4568 - 2.3338 1.00 2742 147 0.1683 0.2090 REMARK 3 8 2.3338 - 2.2322 1.00 2725 165 0.1636 0.2291 REMARK 3 9 2.2322 - 2.1462 1.00 2776 135 0.1702 0.2180 REMARK 3 10 2.1462 - 2.0722 0.97 2669 138 0.1833 0.2412 REMARK 3 11 2.0722 - 2.0074 0.90 2473 125 0.2100 0.2441 REMARK 3 12 2.0074 - 1.9500 0.82 2285 95 0.2402 0.3125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3355 REMARK 3 ANGLE : 1.106 4555 REMARK 3 CHIRALITY : 0.076 489 REMARK 3 PLANARITY : 0.004 592 REMARK 3 DIHEDRAL : 15.200 1226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7216 26.5723 -3.9020 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.1265 REMARK 3 T33: 0.0589 T12: 0.0026 REMARK 3 T13: -0.0010 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.0711 L22: 5.6113 REMARK 3 L33: 0.3589 L12: -0.2577 REMARK 3 L13: -0.5862 L23: -0.0748 REMARK 3 S TENSOR REMARK 3 S11: -0.1585 S12: -0.1848 S13: -0.0583 REMARK 3 S21: 0.1028 S22: 0.2128 S23: 0.1287 REMARK 3 S31: -0.0384 S32: 0.0650 S33: 0.0054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2571 18.5562 5.8582 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.2793 REMARK 3 T33: 0.1736 T12: 0.0049 REMARK 3 T13: -0.0141 T23: 0.1287 REMARK 3 L TENSOR REMARK 3 L11: 2.2973 L22: 2.6572 REMARK 3 L33: 2.1270 L12: -0.2425 REMARK 3 L13: -0.4507 L23: -1.0594 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -1.0589 S13: -0.3778 REMARK 3 S21: 0.6526 S22: -0.0067 S23: -0.2732 REMARK 3 S31: -0.0767 S32: -0.1553 S33: -0.0152 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6862 38.5161 -6.3218 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.1320 REMARK 3 T33: 0.0715 T12: -0.0122 REMARK 3 T13: -0.0045 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 1.7658 L22: 1.8707 REMARK 3 L33: 0.6662 L12: 0.5477 REMARK 3 L13: 0.0034 L23: -0.3073 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: -0.0833 S13: 0.1047 REMARK 3 S21: 0.0079 S22: 0.0666 S23: -0.2776 REMARK 3 S31: -0.1153 S32: 0.1610 S33: 0.0103 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2684 21.4179 5.0246 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.2532 REMARK 3 T33: 0.2017 T12: 0.0018 REMARK 3 T13: 0.0639 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.2162 L22: 3.2415 REMARK 3 L33: 2.9240 L12: 0.3628 REMARK 3 L13: -1.0932 L23: -0.4154 REMARK 3 S TENSOR REMARK 3 S11: -0.2810 S12: -0.2340 S13: -0.5099 REMARK 3 S21: -0.1746 S22: 0.1831 S23: 0.5494 REMARK 3 S31: 0.5614 S32: -0.1447 S33: 0.1725 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5219 31.1448 3.1396 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.1229 REMARK 3 T33: 0.0664 T12: 0.0336 REMARK 3 T13: 0.0187 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.2668 L22: 1.7404 REMARK 3 L33: 0.6929 L12: 1.2438 REMARK 3 L13: -0.9348 L23: -0.7260 REMARK 3 S TENSOR REMARK 3 S11: -0.1405 S12: -0.1120 S13: -0.1305 REMARK 3 S21: 0.1153 S22: 0.1024 S23: -0.0177 REMARK 3 S31: 0.0689 S32: -0.0994 S33: 0.0282 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1637 28.4646 3.4843 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.1598 REMARK 3 T33: 0.0543 T12: 0.0234 REMARK 3 T13: 0.0105 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.3419 L22: 1.1693 REMARK 3 L33: 0.7387 L12: -0.1275 REMARK 3 L13: -0.4456 L23: -0.6575 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: -0.2287 S13: -0.1115 REMARK 3 S21: 0.1915 S22: 0.1150 S23: 0.0441 REMARK 3 S31: 0.0627 S32: 0.0858 S33: 0.0362 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3284 31.8422 9.4265 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2233 REMARK 3 T33: 0.1549 T12: 0.0239 REMARK 3 T13: 0.1837 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 2.4413 L22: 3.1025 REMARK 3 L33: 2.2379 L12: 0.2571 REMARK 3 L13: -0.0892 L23: -0.4792 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.8113 S13: 0.2650 REMARK 3 S21: 0.6223 S22: 0.1923 S23: 0.6481 REMARK 3 S31: -0.4771 S32: -0.1080 S33: 0.0791 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7636 34.6769 1.5805 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1617 REMARK 3 T33: 0.1608 T12: 0.0387 REMARK 3 T13: -0.0047 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 5.2393 L22: 5.8879 REMARK 3 L33: 2.6587 L12: 3.4225 REMARK 3 L13: -2.6682 L23: -1.9181 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: 0.3358 S13: 0.7571 REMARK 3 S21: 0.1241 S22: 0.3239 S23: 1.1260 REMARK 3 S31: -0.1546 S32: -0.3794 S33: -0.2581 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1833 27.1721 -14.4037 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.0732 REMARK 3 T33: 0.0476 T12: 0.0078 REMARK 3 T13: -0.0218 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.1110 L22: 1.4869 REMARK 3 L33: 1.1000 L12: 0.3177 REMARK 3 L13: -0.9088 L23: -0.2043 REMARK 3 S TENSOR REMARK 3 S11: -0.0503 S12: -0.0048 S13: -0.1072 REMARK 3 S21: -0.0721 S22: -0.0190 S23: -0.0002 REMARK 3 S31: -0.0010 S32: 0.0157 S33: 0.0756 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1249 33.9445 -19.1177 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1554 REMARK 3 T33: 0.1092 T12: -0.0234 REMARK 3 T13: 0.0131 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.1487 L22: 8.2099 REMARK 3 L33: 0.8877 L12: -4.9969 REMARK 3 L13: -0.7835 L23: 1.0088 REMARK 3 S TENSOR REMARK 3 S11: 0.1773 S12: 0.3814 S13: 0.2346 REMARK 3 S21: -0.2656 S22: -0.1469 S23: -0.2882 REMARK 3 S31: -0.1937 S32: 0.1470 S33: 0.0184 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6794 14.5725 -9.8725 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.0887 REMARK 3 T33: 0.2308 T12: 0.0454 REMARK 3 T13: 0.0333 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.8542 L22: 1.3674 REMARK 3 L33: 1.4529 L12: 0.2524 REMARK 3 L13: -0.3184 L23: -0.2065 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: -0.0409 S13: -0.6748 REMARK 3 S21: 0.0429 S22: -0.0361 S23: -0.0722 REMARK 3 S31: 0.0019 S32: 0.0186 S33: 0.0623 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7048 12.3132 -5.3275 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1421 REMARK 3 T33: 0.1786 T12: 0.0236 REMARK 3 T13: 0.0582 T23: 0.0699 REMARK 3 L TENSOR REMARK 3 L11: 3.4361 L22: 1.1325 REMARK 3 L33: 0.4679 L12: 0.3734 REMARK 3 L13: 1.0405 L23: 0.1830 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: -0.3826 S13: -0.3035 REMARK 3 S21: -0.1571 S22: 0.0752 S23: 0.0280 REMARK 3 S31: -0.0327 S32: -0.1675 S33: -0.0243 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9683 9.7255 -8.3423 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1188 REMARK 3 T33: 0.2850 T12: -0.0071 REMARK 3 T13: 0.0364 T23: 0.0764 REMARK 3 L TENSOR REMARK 3 L11: 1.7197 L22: 0.7890 REMARK 3 L33: 1.1895 L12: -0.8120 REMARK 3 L13: 0.4851 L23: -0.1221 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: -0.0980 S13: -0.5871 REMARK 3 S21: -0.0223 S22: 0.1197 S23: 0.2666 REMARK 3 S31: 0.0660 S32: -0.1572 S33: -0.0529 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2651 22.6946 -5.0523 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.1967 REMARK 3 T33: 0.1699 T12: 0.0060 REMARK 3 T13: -0.0308 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 3.1808 L22: 6.7662 REMARK 3 L33: 5.2281 L12: 1.7561 REMARK 3 L13: -1.8025 L23: -4.1409 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.3294 S13: -0.4592 REMARK 3 S21: 0.3971 S22: -0.4437 S23: -0.7433 REMARK 3 S31: -0.1648 S32: 0.4487 S33: 0.4174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 62.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M POTASSIUM NITRATE, REMARK 280 0.1M BIS-TRIS-PROPANE PH 7.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.76950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.76950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.54550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.54550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.76950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.54550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.29000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.76950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.54550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.29000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 741 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 785 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 185 REMARK 465 ASP A 186 REMARK 465 ASP A 187 REMARK 465 ASP A 188 REMARK 465 LYS A 189 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 THR B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 465 ASP B 194 REMARK 465 ASP B 195 REMARK 465 ASP B 196 REMARK 465 ASP B 197 REMARK 465 LYS B 198 REMARK 465 ASP C 14 REMARK 465 LYS C 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 19 C2 NAG B 500 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 33 -113.63 59.68 REMARK 500 THR B 90 -74.11 -123.13 REMARK 500 ASN B 113 20.73 -141.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MCY RELATED DB: PDB REMARK 900 RELATED ID: 4MCZ RELATED DB: PDB REMARK 900 RELATED ID: 4MD0 RELATED DB: PDB REMARK 900 RELATED ID: 4MD5 RELATED DB: PDB REMARK 900 RELATED ID: 4MDI RELATED DB: PDB REMARK 900 RELATED ID: 4MDJ RELATED DB: PDB DBREF 4MD4 A 1 181 UNP P01903 DRA_HUMAN 26 206 DBREF 4MD4 B 1 190 UNP P13760 2B14_HUMAN 30 219 DBREF 4MD4 C 1 15 UNP P16112 PGCA_HUMAN 89 103 SEQADV 4MD4 THR A 182 UNP P01903 EXPRESSION TAG SEQADV 4MD4 SER A 183 UNP P01903 EXPRESSION TAG SEQADV 4MD4 GLY A 184 UNP P01903 EXPRESSION TAG SEQADV 4MD4 ASP A 185 UNP P01903 EXPRESSION TAG SEQADV 4MD4 ASP A 186 UNP P01903 EXPRESSION TAG SEQADV 4MD4 ASP A 187 UNP P01903 EXPRESSION TAG SEQADV 4MD4 ASP A 188 UNP P01903 EXPRESSION TAG SEQADV 4MD4 LYS A 189 UNP P01903 EXPRESSION TAG SEQADV 4MD4 GLY B -1 UNP P13760 EXPRESSION TAG SEQADV 4MD4 SER B 0 UNP P13760 EXPRESSION TAG SEQADV 4MD4 THR B 191 UNP P13760 EXPRESSION TAG SEQADV 4MD4 GLY B 192 UNP P13760 EXPRESSION TAG SEQADV 4MD4 GLY B 193 UNP P13760 EXPRESSION TAG SEQADV 4MD4 ASP B 194 UNP P13760 EXPRESSION TAG SEQADV 4MD4 ASP B 195 UNP P13760 EXPRESSION TAG SEQADV 4MD4 ASP B 196 UNP P13760 EXPRESSION TAG SEQADV 4MD4 ASP B 197 UNP P13760 EXPRESSION TAG SEQADV 4MD4 LYS B 198 UNP P13760 EXPRESSION TAG SEQADV 4MD4 TYR C 4 UNP P16112 GLY 92 ENGINEERED MUTATION SEQRES 1 A 189 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 189 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 189 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 189 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 189 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 189 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 189 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 189 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 189 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 189 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 189 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 189 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 189 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 189 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP THR SEQRES 15 A 189 SER GLY ASP ASP ASP ASP LYS SEQRES 1 B 200 GLY SER GLY ASP THR ARG PRO ARG PHE LEU GLU GLN VAL SEQRES 2 B 200 LYS HIS GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL SEQRES 3 B 200 ARG PHE LEU ASP ARG TYR PHE TYR HIS GLN GLU GLU TYR SEQRES 4 B 200 VAL ARG PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL SEQRES 5 B 200 THR GLU LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER SEQRES 6 B 200 GLN LYS ASP LEU LEU GLU GLN LYS ARG ALA ALA VAL ASP SEQRES 7 B 200 THR TYR CYS ARG HIS ASN TYR GLY VAL GLY GLU SER PHE SEQRES 8 B 200 THR VAL GLN ARG ARG VAL TYR PRO GLU VAL THR VAL TYR SEQRES 9 B 200 PRO ALA LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU SEQRES 10 B 200 VAL CYS SER VAL ASN GLY PHE TYR PRO GLY SER ILE GLU SEQRES 11 B 200 VAL ARG TRP PHE ARG ASN GLY GLN GLU GLU LYS THR GLY SEQRES 12 B 200 VAL VAL SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR SEQRES 13 B 200 PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO ARG SER SEQRES 14 B 200 GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SER LEU SEQRES 15 B 200 THR SER PRO LEU THR VAL GLU TRP ARG ALA THR GLY GLY SEQRES 16 B 200 ASP ASP ASP ASP LYS SEQRES 1 C 15 ALA THR GLU TYR CIR VAL CIR VAL ASN SER ALA TYR GLN SEQRES 2 C 15 ASP LYS MODRES 4MD4 ASN A 118 ASN GLYCOSYLATION SITE MODRES 4MD4 ASN A 78 ASN GLYCOSYLATION SITE MODRES 4MD4 ASN B 19 ASN GLYCOSYLATION SITE MODRES 4MD4 CIR C 5 ARG CITRULLINE MODRES 4MD4 CIR C 7 ARG CITRULLINE HET CIR C 5 11 HET CIR C 7 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG A 201 14 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET NAG B 500 14 HETNAM CIR CITRULLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CIR 2(C6 H13 N3 O3) FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 10 HOH *470(H2 O) HELIX 1 1 GLU A 47 ALA A 52 1 6 HELIX 2 2 ALA A 56 SER A 77 1 22 HELIX 3 3 THR B 51 LEU B 53 5 3 HELIX 4 4 GLY B 54 SER B 63 1 10 HELIX 5 5 GLN B 64 TYR B 78 1 15 HELIX 6 6 TYR B 78 GLU B 87 1 10 HELIX 7 7 SER B 88 THR B 90 5 3 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 ASN A 15 -1 N LEU A 14 O SER A 19 SHEET 5 A 8 PHE B 7 PHE B 18 -1 O PHE B 17 N HIS A 5 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O ARG B 25 N HIS B 16 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O TYR B 37 N TYR B 30 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 THR A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 B 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 THR A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 D 4 LYS A 126 VAL A 128 0 SHEET 2 D 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 D 4 VAL A 160 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 D 4 LEU A 174 GLU A 179 -1 O LEU A 174 N VAL A 165 SHEET 1 E 4 GLU B 98 ALA B 104 0 SHEET 2 E 4 LEU B 114 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 E 4 PHE B 155 GLU B 162 -1 O THR B 157 N VAL B 119 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 GLU B 98 ALA B 104 0 SHEET 2 F 4 LEU B 114 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 F 4 PHE B 155 GLU B 162 -1 O THR B 157 N VAL B 119 SHEET 4 F 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 GLU B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 G 4 LEU B 184 ARG B 189 -1 O LEU B 184 N VAL B 175 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.07 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.02 LINK ND2 ASN A 78 C1 NAG A 201 1555 1555 1.45 LINK ND2 ASN A 118 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 19 C1 NAG B 500 1555 1555 1.45 LINK C TYR C 4 N CIR C 5 1555 1555 1.35 LINK C CIR C 5 N VAL C 6 1555 1555 1.31 LINK C VAL C 6 N CIR C 7 1555 1555 1.35 LINK C CIR C 7 N VAL C 8 1555 1555 1.31 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 CISPEP 1 ASN A 15 PRO A 16 0 3.54 CISPEP 2 THR A 113 PRO A 114 0 -1.10 CISPEP 3 TYR B 123 PRO B 124 0 3.89 CRYST1 67.091 182.580 77.539 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012897 0.00000