PDB Short entry for 4MEL HEADER HYDROLASE 27-AUG-13 4MEL TITLE CRYSTAL STRUCTURE OF THE HUMAN USP11 DUSP-UBL DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DUSP-UBL DOMAINS, UNP RESIDUES 67-288; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 11, UBIQUITIN THIOESTERASE 11, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 11; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: 9606; SOURCE 6 GENE: UHX1, USP11; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS DOMAIN PRESENT IN UBIQUITIN SPECIFIC PROTEASES (DUSP), UBIQUITIN-LIKE KEYWDS 2 DOMAIN (UBL), DEUBIQUITINATING ENZYME, DUB, DU FINGER, UBIQUITIN KEYWDS 3 THIOLESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HARPER,H.E.GRATTON,I.CORNACIU,M.OBERER,D.J.SCOTT,J.EMSLEY,I.DREVENY REVDAT 3 20-SEP-23 4MEL 1 SEQADV REVDAT 2 28-MAY-14 4MEL 1 JRNL REVDAT 1 07-MAY-14 4MEL 0 JRNL AUTH S.HARPER,H.E.GRATTON,I.CORNACIU,M.OBERER,D.J.SCOTT,J.EMSLEY, JRNL AUTH 2 I.DREVENY JRNL TITL STRUCTURE AND CATALYTIC REGULATORY FUNCTION OF UBIQUITIN JRNL TITL 2 SPECIFIC PROTEASE 11 N-TERMINAL AND UBIQUITIN-LIKE DOMAINS. JRNL REF BIOCHEMISTRY V. 53 2966 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24724799 JRNL DOI 10.1021/BI500116X REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4774 - 4.5990 1.00 2728 149 0.2111 0.2741 REMARK 3 2 4.5990 - 3.6514 1.00 2738 138 0.2174 0.2684 REMARK 3 3 3.6514 - 3.1901 1.00 2714 126 0.2720 0.3556 REMARK 3 4 3.1901 - 2.8985 0.99 2690 133 0.2932 0.3902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3539 REMARK 3 ANGLE : 0.641 4824 REMARK 3 CHIRALITY : 0.027 515 REMARK 3 PLANARITY : 0.003 626 REMARK 3 DIHEDRAL : 13.302 1280 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8633 -24.3397 -58.3327 REMARK 3 T TENSOR REMARK 3 T11: 0.6503 T22: 0.5289 REMARK 3 T33: 0.7170 T12: 0.0139 REMARK 3 T13: 0.0070 T23: 0.3617 REMARK 3 L TENSOR REMARK 3 L11: 0.0988 L22: 0.0444 REMARK 3 L33: 0.1132 L12: 0.0496 REMARK 3 L13: -0.1016 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.0629 S13: -0.0306 REMARK 3 S21: 0.0483 S22: 0.0218 S23: -0.0140 REMARK 3 S31: 0.0037 S32: 0.0053 S33: 0.0393 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6685 -17.1590 -62.5642 REMARK 3 T TENSOR REMARK 3 T11: 0.7031 T22: 0.7579 REMARK 3 T33: 0.5561 T12: -0.0212 REMARK 3 T13: 0.0046 T23: 0.3684 REMARK 3 L TENSOR REMARK 3 L11: 0.1006 L22: 0.0446 REMARK 3 L33: 0.0072 L12: -0.0367 REMARK 3 L13: -0.0076 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: -0.0066 S13: 0.1185 REMARK 3 S21: -0.0461 S22: 0.0585 S23: -0.0144 REMARK 3 S31: 0.1739 S32: -0.1719 S33: 0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7680 -9.2757 -70.5814 REMARK 3 T TENSOR REMARK 3 T11: 0.4688 T22: 0.5547 REMARK 3 T33: 0.5133 T12: 0.0083 REMARK 3 T13: -0.0487 T23: 0.2924 REMARK 3 L TENSOR REMARK 3 L11: 0.0127 L22: 0.0062 REMARK 3 L33: 0.0090 L12: 0.0058 REMARK 3 L13: -0.0084 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.2499 S12: -0.0332 S13: -0.0660 REMARK 3 S21: -0.1112 S22: 0.2383 S23: 0.1225 REMARK 3 S31: 0.0655 S32: -0.2672 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9732 8.6815 -37.3257 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.1288 REMARK 3 T33: -0.0360 T12: 0.1837 REMARK 3 T13: 0.1745 T23: 0.3099 REMARK 3 L TENSOR REMARK 3 L11: 0.0670 L22: 0.1175 REMARK 3 L33: 0.0222 L12: -0.0061 REMARK 3 L13: 0.0113 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: 0.0918 S12: -0.0433 S13: 0.0316 REMARK 3 S21: -0.2308 S22: -0.1245 S23: 0.0014 REMARK 3 S31: -0.0459 S32: -0.0194 S33: -0.0862 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 163 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7335 0.4536 -27.6290 REMARK 3 T TENSOR REMARK 3 T11: -0.1944 T22: -0.3217 REMARK 3 T33: 0.2302 T12: 0.5010 REMARK 3 T13: -0.0511 T23: 0.2748 REMARK 3 L TENSOR REMARK 3 L11: 0.3646 L22: 0.1415 REMARK 3 L33: 0.0142 L12: -0.0948 REMARK 3 L13: -0.0333 L23: 0.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: 0.2745 S13: 0.2041 REMARK 3 S21: -0.1118 S22: -0.4136 S23: -0.3096 REMARK 3 S31: 0.0008 S32: 0.1952 S33: -0.5107 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9321 33.7637 -39.3494 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.1506 REMARK 3 T33: 0.1044 T12: -0.1423 REMARK 3 T13: -0.0990 T23: 0.2745 REMARK 3 L TENSOR REMARK 3 L11: 0.0293 L22: 0.0414 REMARK 3 L33: 0.1276 L12: 0.0117 REMARK 3 L13: -0.0475 L23: -0.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.0822 S13: 0.0579 REMARK 3 S21: 0.1000 S22: -0.1720 S23: -0.0126 REMARK 3 S31: -0.3613 S32: 0.3626 S33: -0.0921 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5983 15.8292 -74.8295 REMARK 3 T TENSOR REMARK 3 T11: 0.5811 T22: 0.2790 REMARK 3 T33: 0.2781 T12: 0.4138 REMARK 3 T13: -0.1886 T23: -0.0587 REMARK 3 L TENSOR REMARK 3 L11: 0.1115 L22: 0.1334 REMARK 3 L33: 0.1852 L12: -0.0700 REMARK 3 L13: 0.0827 L23: -0.1203 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.1163 S13: -0.2268 REMARK 3 S21: 0.3258 S22: 0.3671 S23: 0.0692 REMARK 3 S31: 0.0479 S32: -0.0376 S33: 0.5765 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.899 REMARK 200 RESOLUTION RANGE LOW (A) : 131.982 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.83200 REMARK 200 R SYM FOR SHELL (I) : 0.83200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3JYU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES/IMIDAZOLE, 30 MM NA NITRATE, REMARK 280 30 MM NA PHOSPHATE AND 30 MM NA SULPHATE, 12.5% W/V PEG 1000, REMARK 280 12.5% W/V PEG 3350, 12.5% V/V MPD., PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 65.99100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAIN A. CHAIN B.) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 ASP A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 26 REMARK 465 PRO A 27 REMARK 465 GLN A 28 REMARK 465 HIS A 29 REMARK 465 GLU A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 245 REMARK 465 GLU A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 MET B 23 REMARK 465 ASP B 24 REMARK 465 ARG B 25 REMARK 465 GLU B 26 REMARK 465 PRO B 27 REMARK 465 GLN B 28 REMARK 465 HIS B 29 REMARK 465 GLU B 30 REMARK 465 GLU B 31 REMARK 465 LEU B 245 REMARK 465 GLU B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 95 CG CD OE1 NE2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 203 CG OD1 ND2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 ARG B 188 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 203 CG OD1 ND2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 50 44.76 -86.63 REMARK 500 SER A 204 -138.10 52.84 REMARK 500 GLU A 205 79.24 -119.91 REMARK 500 LEU A 211 78.76 -109.00 REMARK 500 ASP A 220 49.90 -81.29 REMARK 500 ALA A 221 -10.17 -157.13 REMARK 500 ALA A 243 56.91 -96.73 REMARK 500 GLU B 50 45.68 -86.80 REMARK 500 SER B 204 -138.79 53.68 REMARK 500 GLU B 205 76.33 -119.68 REMARK 500 ALA B 243 52.51 -96.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MEM RELATED DB: PDB DBREF 4MEL A 24 245 UNP P51784 UBP11_HUMAN 67 288 DBREF 4MEL B 24 245 UNP P51784 UBP11_HUMAN 67 288 SEQADV 4MEL MET A 23 UNP P51784 EXPRESSION TAG SEQADV 4MEL GLU A 246 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS A 247 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS A 248 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS A 249 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS A 250 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS A 251 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS A 252 UNP P51784 EXPRESSION TAG SEQADV 4MEL MET B 23 UNP P51784 EXPRESSION TAG SEQADV 4MEL GLU B 246 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS B 247 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS B 248 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS B 249 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS B 250 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS B 251 UNP P51784 EXPRESSION TAG SEQADV 4MEL HIS B 252 UNP P51784 EXPRESSION TAG SEQRES 1 A 230 MET ASP ARG GLU PRO GLN HIS GLU GLU LEU PRO GLY LEU SEQRES 2 A 230 ASP SER GLN TRP ARG GLN ILE GLU ASN GLY GLU SER GLY SEQRES 3 A 230 ARG GLU ARG PRO LEU ARG ALA GLY GLU SER TRP PHE LEU SEQRES 4 A 230 VAL GLU LYS HIS TRP TYR LYS GLN TRP GLU ALA TYR VAL SEQRES 5 A 230 GLN GLY GLY ASP GLN ASP SER SER THR PHE PRO GLY CYS SEQRES 6 A 230 ILE ASN ASN ALA THR LEU PHE GLN ASP GLU ILE ASN TRP SEQRES 7 A 230 ARG LEU LYS GLU GLY LEU VAL GLU GLY GLU ASP TYR VAL SEQRES 8 A 230 LEU LEU PRO ALA ALA ALA TRP HIS TYR LEU VAL SER TRP SEQRES 9 A 230 TYR GLY LEU GLU HIS GLY GLN PRO PRO ILE GLU ARG LYS SEQRES 10 A 230 VAL ILE GLU LEU PRO ASN ILE GLN LYS VAL GLU VAL TYR SEQRES 11 A 230 PRO VAL GLU LEU LEU LEU VAL ARG HIS ASN ASP LEU GLY SEQRES 12 A 230 LYS SER HIS THR VAL GLN PHE SER HIS THR ASP SER ILE SEQRES 13 A 230 GLY LEU VAL LEU ARG THR ALA ARG GLU ARG PHE LEU VAL SEQRES 14 A 230 GLU PRO GLN GLU ASP THR ARG LEU TRP ALA LYS ASN SER SEQRES 15 A 230 GLU GLY SER LEU ASP ARG LEU TYR ASP THR HIS ILE THR SEQRES 16 A 230 VAL LEU ASP ALA ALA LEU GLU THR GLY GLN LEU ILE ILE SEQRES 17 A 230 MET GLU THR ARG LYS LYS ASP GLY THR TRP PRO SER ALA SEQRES 18 A 230 GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 230 MET ASP ARG GLU PRO GLN HIS GLU GLU LEU PRO GLY LEU SEQRES 2 B 230 ASP SER GLN TRP ARG GLN ILE GLU ASN GLY GLU SER GLY SEQRES 3 B 230 ARG GLU ARG PRO LEU ARG ALA GLY GLU SER TRP PHE LEU SEQRES 4 B 230 VAL GLU LYS HIS TRP TYR LYS GLN TRP GLU ALA TYR VAL SEQRES 5 B 230 GLN GLY GLY ASP GLN ASP SER SER THR PHE PRO GLY CYS SEQRES 6 B 230 ILE ASN ASN ALA THR LEU PHE GLN ASP GLU ILE ASN TRP SEQRES 7 B 230 ARG LEU LYS GLU GLY LEU VAL GLU GLY GLU ASP TYR VAL SEQRES 8 B 230 LEU LEU PRO ALA ALA ALA TRP HIS TYR LEU VAL SER TRP SEQRES 9 B 230 TYR GLY LEU GLU HIS GLY GLN PRO PRO ILE GLU ARG LYS SEQRES 10 B 230 VAL ILE GLU LEU PRO ASN ILE GLN LYS VAL GLU VAL TYR SEQRES 11 B 230 PRO VAL GLU LEU LEU LEU VAL ARG HIS ASN ASP LEU GLY SEQRES 12 B 230 LYS SER HIS THR VAL GLN PHE SER HIS THR ASP SER ILE SEQRES 13 B 230 GLY LEU VAL LEU ARG THR ALA ARG GLU ARG PHE LEU VAL SEQRES 14 B 230 GLU PRO GLN GLU ASP THR ARG LEU TRP ALA LYS ASN SER SEQRES 15 B 230 GLU GLY SER LEU ASP ARG LEU TYR ASP THR HIS ILE THR SEQRES 16 B 230 VAL LEU ASP ALA ALA LEU GLU THR GLY GLN LEU ILE ILE SEQRES 17 B 230 MET GLU THR ARG LYS LYS ASP GLY THR TRP PRO SER ALA SEQRES 18 B 230 GLN LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *4(H2 O) HELIX 1 1 GLY A 34 ASN A 44 1 11 HELIX 2 2 LYS A 64 GLN A 75 1 12 HELIX 3 3 ASN A 90 PHE A 94 5 5 HELIX 4 4 ALA A 117 TYR A 127 1 11 HELIX 5 5 SER A 177 PHE A 189 1 13 HELIX 6 6 VAL A 218 ALA A 222 5 5 HELIX 7 7 GLY B 34 ASN B 44 1 11 HELIX 8 8 LYS B 64 GLN B 75 1 12 HELIX 9 9 ASN B 90 PHE B 94 5 5 HELIX 10 10 ALA B 117 TYR B 127 1 11 HELIX 11 11 SER B 177 PHE B 189 1 13 SHEET 1 A 4 TYR A 112 PRO A 116 0 SHEET 2 A 4 SER A 58 GLU A 63 -1 N PHE A 60 O LEU A 115 SHEET 3 A 4 GLU A 137 GLU A 142 -1 O ARG A 138 N TRP A 59 SHEET 4 A 4 GLN B 147 GLU B 150 -1 O GLU B 150 N LYS A 139 SHEET 1 B 4 GLN A 147 GLU A 150 0 SHEET 2 B 4 GLU B 137 GLU B 142 -1 O ILE B 141 N LYS A 148 SHEET 3 B 4 SER B 58 GLU B 63 -1 N TRP B 59 O ARG B 138 SHEET 4 B 4 TYR B 112 PRO B 116 -1 O LEU B 115 N PHE B 60 SHEET 1 C 5 SER A 167 PHE A 172 0 SHEET 2 C 5 VAL A 154 ARG A 160 -1 N VAL A 154 O PHE A 172 SHEET 3 C 5 LEU A 228 THR A 233 1 O MET A 231 N VAL A 159 SHEET 4 C 5 THR A 197 LYS A 202 -1 N LYS A 202 O LEU A 228 SHEET 5 C 5 ASP A 209 LEU A 211 -1 O LEU A 211 N LEU A 199 SHEET 1 D 5 ASP B 163 PHE B 172 0 SHEET 2 D 5 VAL B 154 ARG B 160 -1 N LEU B 156 O VAL B 170 SHEET 3 D 5 LEU B 228 THR B 233 1 O MET B 231 N VAL B 159 SHEET 4 D 5 THR B 197 LYS B 202 -1 N ARG B 198 O GLU B 232 SHEET 5 D 5 ASP B 209 LEU B 211 -1 O ASP B 209 N ALA B 201 CRYST1 27.725 131.982 72.029 90.00 96.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036069 0.000000 0.004246 0.00000 SCALE2 0.000000 0.007577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013979 0.00000