PDB Short entry for 4N1D HEADER CYTOKINE, SIGNALING PROTEIN 04-OCT-13 4N1D TITLE NODAL/BMP2 CHIMERA NB250 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODAL/BMP2 CHIMERA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP-2, BONE MORPHOGENETIC PROTEIN 2A, BMP-2A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP2, BMP2A, NODAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOKINE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.ESQUIVIES REVDAT 3 26-JUL-17 4N1D 1 SOURCE REMARK REVDAT 2 05-FEB-14 4N1D 1 JRNL REVDAT 1 04-DEC-13 4N1D 0 JRNL AUTH L.ESQUIVIES,A.BLACKLER,M.PERAN,C.RODRIGUEZ-ESTEBAN, JRNL AUTH 2 J.C.IZPISUA BELMONTE,E.BOOKER,P.C.GRAY,C.AHN,W.KWIATKOWSKI, JRNL AUTH 3 S.CHOE JRNL TITL DESIGNER NODAL/BMP2 CHIMERAS MIMIC NODAL SIGNALING, PROMOTE JRNL TITL 2 CHONDROGENESIS, AND REVEAL A BMP2-LIKE STRUCTURE. JRNL REF J.BIOL.CHEM. V. 289 1788 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24311780 JRNL DOI 10.1074/JBC.M113.529180 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 13314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5522 - 3.9748 1.00 1395 165 0.1788 0.2058 REMARK 3 2 3.9748 - 3.1558 1.00 1364 146 0.1642 0.1782 REMARK 3 3 3.1558 - 2.7572 1.00 1335 154 0.1750 0.2029 REMARK 3 4 2.7572 - 2.5052 1.00 1343 148 0.1788 0.2420 REMARK 3 5 2.5052 - 2.3257 1.00 1357 127 0.1810 0.2052 REMARK 3 6 2.3257 - 2.1886 1.00 1344 137 0.1716 0.2199 REMARK 3 7 2.1886 - 2.0790 1.00 1293 161 0.1813 0.2147 REMARK 3 8 2.0790 - 1.9885 1.00 1329 153 0.1808 0.2100 REMARK 3 9 1.9885 - 1.9120 0.92 1226 137 0.1909 0.2260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 881 REMARK 3 ANGLE : 1.136 1192 REMARK 3 CHIRALITY : 0.080 123 REMARK 3 PLANARITY : 0.004 155 REMARK 3 DIHEDRAL : 13.981 329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2518 -22.7055 -13.4475 REMARK 3 T TENSOR REMARK 3 T11: 0.4976 T22: 0.3676 REMARK 3 T33: 0.4010 T12: 0.0281 REMARK 3 T13: 0.1557 T23: 0.1326 REMARK 3 L TENSOR REMARK 3 L11: 6.4131 L22: 3.4537 REMARK 3 L33: 4.2830 L12: -4.4813 REMARK 3 L13: 1.3155 L23: 0.1141 REMARK 3 S TENSOR REMARK 3 S11: 0.7037 S12: 1.2665 S13: 1.1698 REMARK 3 S21: -0.6630 S22: -0.6546 S23: -0.7249 REMARK 3 S31: -0.5758 S32: -0.2625 S33: 0.0440 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8878 -38.0431 -9.8317 REMARK 3 T TENSOR REMARK 3 T11: 0.3115 T22: 0.3541 REMARK 3 T33: 0.4174 T12: -0.0318 REMARK 3 T13: 0.0493 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 8.7415 L22: 3.9429 REMARK 3 L33: 2.6861 L12: -0.5823 REMARK 3 L13: 0.3872 L23: 0.9559 REMARK 3 S TENSOR REMARK 3 S11: 0.2920 S12: -0.4140 S13: 0.3867 REMARK 3 S21: 0.3280 S22: 0.0967 S23: -1.1056 REMARK 3 S31: -0.0997 S32: 0.7709 S33: -0.3207 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5108 -28.0550 -12.5681 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.2970 REMARK 3 T33: 0.3232 T12: 0.0061 REMARK 3 T13: 0.0759 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 8.6917 L22: 9.3906 REMARK 3 L33: 6.1894 L12: -8.8799 REMARK 3 L13: -6.1909 L23: 5.8667 REMARK 3 S TENSOR REMARK 3 S11: 0.2858 S12: -0.0395 S13: 0.8487 REMARK 3 S21: -0.3827 S22: 0.1717 S23: -0.6417 REMARK 3 S31: -0.5428 S32: 0.0630 S33: -0.4520 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1226 -13.6401 -4.7348 REMARK 3 T TENSOR REMARK 3 T11: 0.5612 T22: 0.3525 REMARK 3 T33: 0.4860 T12: 0.1183 REMARK 3 T13: 0.1601 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 6.2733 L22: 8.2066 REMARK 3 L33: 8.3242 L12: -4.2641 REMARK 3 L13: -2.8334 L23: 7.5058 REMARK 3 S TENSOR REMARK 3 S11: 0.6546 S12: 0.1799 S13: 0.5821 REMARK 3 S21: -0.5515 S22: 0.0002 S23: -0.2044 REMARK 3 S31: -1.2829 S32: 0.0912 S33: -0.7165 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3682 -20.8025 -6.6805 REMARK 3 T TENSOR REMARK 3 T11: 0.5834 T22: 0.5770 REMARK 3 T33: 0.3495 T12: 0.0943 REMARK 3 T13: -0.0300 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 9.5545 L22: 5.7572 REMARK 3 L33: 5.1323 L12: 7.4252 REMARK 3 L13: -6.9718 L23: -5.3940 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: 1.2668 S13: 0.8054 REMARK 3 S21: -1.4376 S22: 0.1372 S23: 0.5811 REMARK 3 S31: -0.0552 S32: -1.0843 S33: -0.1245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3346 -12.1776 4.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.4579 T22: 0.3338 REMARK 3 T33: 0.4491 T12: -0.0028 REMARK 3 T13: 0.1534 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 6.3158 L22: 3.9795 REMARK 3 L33: 8.1545 L12: -1.3734 REMARK 3 L13: -3.6226 L23: -2.2687 REMARK 3 S TENSOR REMARK 3 S11: 0.7184 S12: 0.2132 S13: 1.4934 REMARK 3 S21: -0.0625 S22: -0.0680 S23: -0.1724 REMARK 3 S31: -1.3363 S32: 0.2927 S33: -0.5923 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2063 -25.3933 -4.9201 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.3743 REMARK 3 T33: 0.2422 T12: 0.0513 REMARK 3 T13: -0.0096 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 8.1125 L22: 4.2911 REMARK 3 L33: 5.6324 L12: -5.7805 REMARK 3 L13: -6.6664 L23: 4.8304 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: 0.3138 S13: -0.1553 REMARK 3 S21: -0.5300 S22: 0.0888 S23: -0.1007 REMARK 3 S31: -0.2821 S32: -0.1853 S33: 0.1066 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0915 -42.2527 -9.4209 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.2848 REMARK 3 T33: 0.2897 T12: 0.0062 REMARK 3 T13: 0.0260 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 9.8005 L22: 6.0767 REMARK 3 L33: 0.5460 L12: -6.6838 REMARK 3 L13: 0.4346 L23: 0.2343 REMARK 3 S TENSOR REMARK 3 S11: 0.2320 S12: 0.0459 S13: -0.1754 REMARK 3 S21: -0.1087 S22: -0.0209 S23: -0.0414 REMARK 3 S31: 0.1321 S32: 0.0797 S33: -0.1705 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3743 -48.6655 -5.2054 REMARK 3 T TENSOR REMARK 3 T11: 0.3326 T22: 0.3186 REMARK 3 T33: 0.3321 T12: -0.0227 REMARK 3 T13: -0.0007 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 4.8392 L22: 5.5520 REMARK 3 L33: 9.1305 L12: -5.0980 REMARK 3 L13: 2.9527 L23: -2.7692 REMARK 3 S TENSOR REMARK 3 S11: -0.1045 S12: -0.4659 S13: -0.0460 REMARK 3 S21: 0.6132 S22: 0.0882 S23: 0.0293 REMARK 3 S31: 0.2265 S32: 0.1845 S33: -0.0464 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5036 -30.2317 -6.9732 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.3187 REMARK 3 T33: 0.2268 T12: -0.0038 REMARK 3 T13: 0.0434 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.1273 L22: 8.4029 REMARK 3 L33: 2.2367 L12: -4.9767 REMARK 3 L13: -1.4848 L23: 3.1948 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: 0.0951 S13: -0.2306 REMARK 3 S21: -0.0409 S22: -0.1629 S23: 0.4684 REMARK 3 S31: -0.0692 S32: -0.3414 S33: 0.0216 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13316 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.912 REMARK 200 RESOLUTION RANGE LOW (A) : 31.548 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1 M NA ACETATE PH 4.6, REMARK 280 30% 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.78500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.58868 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.49800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.78500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.58868 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.49800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.78500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.58868 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.49800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.78500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.58868 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.49800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.78500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.58868 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.49800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.78500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.58868 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.49800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.17737 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 64.99600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 55.17737 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 64.99600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 55.17737 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 64.99600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 55.17737 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.99600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 55.17737 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 64.99600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 55.17737 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 64.99600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER GENERATED BY THE OPERATIONS: Y,X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 252 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 267 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 217 O HOH A 244 1.89 REMARK 500 O HOH A 214 O HOH A 263 2.07 REMARK 500 O HOH A 202 O HOH A 264 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 245 O HOH A 245 2445 1.86 REMARK 500 O HOH A 213 O HOH A 264 4555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 37.32 -92.41 REMARK 500 TYR A 41 175.01 58.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 4N1D A 1 23 UNP P12643 BMP2_HUMAN 283 305 DBREF 4N1D A 24 80 UNP Q96S42 NODAL_HUMAN 257 313 DBREF 4N1D A 81 115 UNP P12643 BMP2_HUMAN 362 396 SEQRES 1 A 116 MET GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SEQRES 2 A 116 SER CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE ASN LEU SEQRES 3 A 116 ILE GLY TRP GLY SER TRP ILE ILE TYR PRO LYS GLN TYR SEQRES 4 A 116 ASN ALA TYR ARG CYS GLU GLY GLU CYS PRO ASN PRO VAL SEQRES 5 A 116 GLY GLU GLU PHE HIS PRO THR ASN HIS ALA TYR ILE GLN SEQRES 6 A 116 SER LEU LEU LYS ARG TYR GLN PRO HIS ARG VAL PRO SER SEQRES 7 A 116 THR CYS CYS VAL PRO THR GLU LEU SER ALA ILE SER MET SEQRES 8 A 116 LEU TYR LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN SEQRES 9 A 116 TYR GLN ASP MET VAL VAL GLU GLY CYS GLY CYS ARG FORMUL 2 HOH *72(H2 O) HELIX 1 1 GLY A 52 HIS A 56 5 5 HELIX 2 2 THR A 58 GLN A 71 1 14 SHEET 1 A 2 LYS A 15 HIS A 17 0 SHEET 2 A 2 ARG A 42 GLU A 44 -1 O ARG A 42 N HIS A 17 SHEET 1 B 2 TYR A 20 ASP A 22 0 SHEET 2 B 2 GLN A 37 ASN A 39 -1 O TYR A 38 N VAL A 21 SHEET 1 C 3 ILE A 32 TYR A 34 0 SHEET 2 C 3 CYS A 79 LEU A 93 -1 O LEU A 91 N TYR A 34 SHEET 3 C 3 VAL A 99 ARG A 115 -1 O VAL A 100 N TYR A 92 SSBOND 1 CYS A 14 CYS A 80 1555 1555 2.05 SSBOND 2 CYS A 43 CYS A 112 1555 1555 2.04 SSBOND 3 CYS A 47 CYS A 114 1555 1555 2.04 SSBOND 4 CYS A 79 CYS A 79 1555 4555 2.03 CISPEP 1 LYS A 11 SER A 12 0 28.20 CISPEP 2 TYR A 34 PRO A 35 0 -2.11 CISPEP 3 ASN A 49 PRO A 50 0 -3.27 CRYST1 95.570 95.570 97.494 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010464 0.006041 0.000000 0.00000 SCALE2 0.000000 0.012082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010257 0.00000