PDB Short entry for 4N7E
HEADER    SIGNALING PROTEIN                       15-OCT-13   4N7E              
TITLE     CRYSTAL STRUCTURE OF THE VPS10P DOMAIN OF HUMAN SORTILIN/NTS3 IN      
TITLE    2 COMPLEX WITH AF38469                                                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SORTILIN;                                                  
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 78-756;                                       
COMPND   5 SYNONYM: 100 KDA NT RECEPTOR, GLYCOPROTEIN 95, GP95, NEUROTENSIN     
COMPND   6 RECEPTOR 3, NT3, NTR3;                                               
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: SORT1;                                                         
SOURCE   6 EXPRESSION_SYSTEM: HOMO SAPIENS;                                     
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 9606;                                       
SOURCE   8 EXPRESSION_SYSTEM_CELL: HEK 293F CELL;                               
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PCEP-PU                                   
KEYWDS    SORTILIN, SMALL MOLECULE LIGAND, AF38469, AF40431, PRONGF,            
KEYWDS   2 ALZHEIMER'S DISEASE, BETA-PROPELLER ASP-BOX REPEAT, VPS10P DOMAIN,   
KEYWDS   3 10CC DOMAIN, RECEPTOR SORTING, MEMBRANE, SIGNALING PROTEIN           
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.L.ANDERSEN,D.STRANDBYGAARD,S.THIRUP                                 
REVDAT   1   22-JAN-14 4N7E    0                                                
JRNL        AUTH   T.J.SCHRDER,S.CHRISTENSEN,S.LINDBERG,M.LANGGARD,L.DAVID,     
JRNL        AUTH 2 P.J.MALTAS,J.ESKILDSEN,J.JACOBSEN,L.TAGMOSE,K.B.SIMONSEN,    
JRNL        AUTH 3 L.C.BIILMANN RNN,I.E.DE JONG,I.J.MALIK,J.J.KARLSSON,         
JRNL        AUTH 4 C.BUNDGAARD,J.EGEBJERG,J.B.STAVENHAGEN,D.STRANDBYGARD,       
JRNL        AUTH 5 S.THIRUP,J.L.ANDERSEN,S.UPPALANCHI,S.PERVARAM,S.P.KASTURI,   
JRNL        AUTH 6 P.ERADI,D.R.SAKUMUDI,S.P.WATSON                              
JRNL        TITL   THE IDENTIFICATION OF AF38469: AN ORALLY BIOAVAILABLE        
JRNL        TITL 2 INHIBITOR OF THE VPS10P FAMILY SORTING RECEPTOR SORTILIN.    
JRNL        REF    BIOORG.MED.CHEM.LETT.         V.  24   177 2014              
JRNL        REFN                   ISSN 0960-894X                               
JRNL        PMID   24355129                                                     
JRNL        DOI    10.1016/J.BMCL.2013.11.046                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.70 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.8.3_1479)                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN             
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-                     
REMARK   3               : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO,              
REMARK   3               : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL            
REMARK   3               : MORIARTY,REETAL PAI,RANDY READ,JANE                  
REMARK   3               : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM             
REMARK   3               : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH,             
REMARK   3               : LAURENT STORONI,TOM TERWILLIGER,PETER                
REMARK   3               : ZWART                                                
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 44.40                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 30366                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.204                           
REMARK   3   R VALUE            (WORKING SET) : 0.201                           
REMARK   3   FREE R VALUE                     : 0.242                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 7.320                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2223                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 44.3643 -  6.7867    1.00     1835   148  0.1892 0.2147        
REMARK   3     2  6.7867 -  5.3898    1.00     1790   138  0.1838 0.2391        
REMARK   3     3  5.3898 -  4.7094    1.00     1769   142  0.1610 0.2130        
REMARK   3     4  4.7094 -  4.2792    1.00     1761   137  0.1534 0.1851        
REMARK   3     5  4.2792 -  3.9727    1.00     1778   148  0.1657 0.2195        
REMARK   3     6  3.9727 -  3.7386    1.00     1745   135  0.2037 0.2604        
REMARK   3     7  3.7386 -  3.5514    1.00     1787   137  0.2155 0.2491        
REMARK   3     8  3.5514 -  3.3969    1.00     1759   137  0.2142 0.2389        
REMARK   3     9  3.3969 -  3.2662    1.00     1743   140  0.2352 0.2418        
REMARK   3    10  3.2662 -  3.1535    1.00     1752   138  0.2503 0.3170        
REMARK   3    11  3.1535 -  3.0549    1.00     1754   139  0.2709 0.3207        
REMARK   3    12  3.0549 -  2.9676    1.00     1752   140  0.2811 0.3553        
REMARK   3    13  2.9676 -  2.8895    1.00     1732   141  0.2763 0.3326        
REMARK   3    14  2.8895 -  2.8190    1.00     1783   134  0.2832 0.3484        
REMARK   3    15  2.8190 -  2.7549    1.00     1763   139  0.3093 0.3200        
REMARK   3    16  2.7549 -  2.7000    0.95     1640   130  0.3369 0.3406        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.380            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.650           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 84.30                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.011           5367                                  
REMARK   3   ANGLE     :  1.354           7258                                  
REMARK   3   CHIRALITY :  0.061            793                                  
REMARK   3   PLANARITY :  0.007            929                                  
REMARK   3   DIHEDRAL  : 15.237           1942                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 5                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 54:228)                             
REMARK   3    ORIGIN FOR THE GROUP (A): -17.4940  36.6506  39.4273              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.8964 T22:   0.7899                                     
REMARK   3      T33:   0.5767 T12:  -0.2521                                     
REMARK   3      T13:  -0.0754 T23:  -0.1032                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   3.0910 L22:   5.1885                                     
REMARK   3      L33:   2.9809 L12:  -2.1932                                     
REMARK   3      L13:  -0.6000 L23:  -0.4584                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.1720 S12:  -0.8384 S13:   0.2306                       
REMARK   3      S21:   0.7959 S22:   0.0649 S23:  -0.1650                       
REMARK   3      S31:  -0.6142 S32:   0.3990 S33:  -0.1669                       
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 229:386)                            
REMARK   3    ORIGIN FOR THE GROUP (A): -28.2968  39.6610  11.1504              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.6850 T22:   0.5901                                     
REMARK   3      T33:   0.4514 T12:   0.1333                                     
REMARK   3      T13:   0.1220 T23:   0.0836                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   2.3265 L22:   7.2940                                     
REMARK   3      L33:   3.9781 L12:  -1.0199                                     
REMARK   3      L13:  -0.1582 L23:   1.2941                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.3741 S12:   0.4138 S13:   0.3582                       
REMARK   3      S21:  -0.0911 S22:  -0.2932 S23:   0.3290                       
REMARK   3      S31:  -1.0896 S32:  -0.5930 S33:  -0.0551                       
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 387:612)                            
REMARK   3    ORIGIN FOR THE GROUP (A): -18.9286  11.3280  21.9023              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.4805 T22:   0.3795                                     
REMARK   3      T33:   0.6396 T12:  -0.0807                                     
REMARK   3      T13:   0.0252 T23:   0.0626                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   3.3568 L22:   2.2603                                     
REMARK   3      L33:   5.5782 L12:  -0.0639                                     
REMARK   3      L13:  -1.2946 L23:  -0.2676                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0910 S12:  -0.1460 S13:  -0.6396                       
REMARK   3      S21:   0.4182 S22:  -0.1950 S23:  -0.0792                       
REMARK   3      S31:   0.6809 S32:   0.1121 S33:   0.2214                       
REMARK   3   TLS GROUP : 4                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 613:681)                            
REMARK   3    ORIGIN FOR THE GROUP (A): -18.3975  28.9515  -1.8760              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.4665 T22:   0.9513                                     
REMARK   3      T33:   0.7826 T12:   0.0671                                     
REMARK   3      T13:   0.0677 T23:   0.1152                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   5.2342 L22:   3.5579                                     
REMARK   3      L33:   3.0275 L12:  -2.8021                                     
REMARK   3      L13:  -0.2462 L23:  -0.0239                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.6901 S12:   0.9690 S13:  -0.0068                       
REMARK   3      S21:  -0.6824 S22:  -0.7077 S23:  -0.0208                       
REMARK   3      S31:  -0.1422 S32:  -0.4026 S33:   0.1242                       
REMARK   3   TLS GROUP : 5                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 682:715)                            
REMARK   3    ORIGIN FOR THE GROUP (A): -21.9835  39.0975 -12.3725              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.6608 T22:   1.3408                                     
REMARK   3      T33:   1.0029 T12:   0.3042                                     
REMARK   3      T13:   0.2310 T23:   0.3571                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   4.1353 L22:   3.9631                                     
REMARK   3      L33:   1.8414 L12:  -4.0261                                     
REMARK   3      L13:   2.7568 L23:  -2.7115                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.8433 S12:   1.8647 S13:   0.9171                       
REMARK   3      S21:  -0.6105 S22:  -1.3497 S23:  -0.8697                       
REMARK   3      S31:   0.1359 S32:   0.5700 S33:   0.3847                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4N7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-13.                  
REMARK 100 THE RCSB ID CODE IS RCSB082845.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 15-MAY-12                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.3                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SLS                                
REMARK 200  BEAMLINE                       : X06DA                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.9000                             
REMARK 200  MONOCHROMATOR                  : BARTELS MONOCHROMATOR              
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : AREA DETECTOR                      
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 2M-F               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30397                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.700                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 46.700                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 6.900                              
REMARK 200  R MERGE                    (I) : 0.07100                            
REMARK 200  R SYM                      (I) : 0.07100                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 15.2000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.80                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 97.9                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.84500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB ENTRY 3F6K WITH LIGAND, GLYCOSYLATIONS AND       
REMARK 200  WATERS REMOVED                                                      
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 65.58                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-TRIS, 0.4 M SODIUM           
REMARK 280  MALONATE, 27 % (W/V) PEG 3350, 4.5 % (V/V) GLYCEROL, PH 7.3,        
REMARK 280  VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       80.97400            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       38.70100            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       80.97400            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       38.70100            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     SER A    45                                                      
REMARK 465     ALA A    46                                                      
REMARK 465     PRO A    47                                                      
REMARK 465     GLY A    48                                                      
REMARK 465     GLU A    49                                                      
REMARK 465     ASP A    50                                                      
REMARK 465     GLU A    51                                                      
REMARK 465     GLU A    52                                                      
REMARK 465     CYS A    53                                                      
REMARK 465     LEU A   101                                                      
REMARK 465     VAL A   102                                                      
REMARK 465     ILE A   103                                                      
REMARK 465     MET A   104                                                      
REMARK 465     THR A   105                                                      
REMARK 465     PHE A   106                                                      
REMARK 465     GLY A   107                                                      
REMARK 465     PHE A   559                                                      
REMARK 465     LEU A   560                                                      
REMARK 465     LYS A   716                                                      
REMARK 465     GLN A   717                                                      
REMARK 465     ASN A   718                                                      
REMARK 465     SER A   719                                                      
REMARK 465     LYS A   720                                                      
REMARK 465     SER A   721                                                      
REMARK 465     ASN A   722                                                      
REMARK 465     SER A   723                                                      
REMARK 465     GLY A   724                                                      
REMARK 465     SER A   725                                                      
REMARK 465     ALA A   726                                                      
REMARK 465     MET A   727                                                      
REMARK 465     ILE A   728                                                      
REMARK 465     GLU A   729                                                      
REMARK 465     GLY A   730                                                      
REMARK 465     ARG A   731                                                      
REMARK 465     GLY A   732                                                      
REMARK 465     VAL A   733                                                      
REMARK 465     GLY A   734                                                      
REMARK 465     HIS A   735                                                      
REMARK 465     HIS A   736                                                      
REMARK 465     HIS A   737                                                      
REMARK 465     HIS A   738                                                      
REMARK 465     HIS A   739                                                      
REMARK 465     HIS A   740                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A  55        5.03     83.75                                   
REMARK 500    TYR A 117       10.20     85.10                                   
REMARK 500    ASN A 129        7.20     81.50                                   
REMARK 500    GLU A 144     -134.02     49.77                                   
REMARK 500    PHE A 170       38.61     39.39                                   
REMARK 500    GLN A 300       38.00     70.23                                   
REMARK 500    ALA A 431     -158.90   -143.52                                   
REMARK 500    GLU A 520       40.23     70.67                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 806                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2JQ A 807                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A   
REMARK 800  373 RESIDUES 801 TO 803                                             
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A   
REMARK 800  549 RESIDUES 804 TO 805                                             
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3F6K   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE VPS10P DOMAIN OF HUMAN SORTILIN/            
REMARK 900 NTS3 IN COMPLEX WITH NEUROTENSIN                                     
REMARK 900 RELATED ID: 4MSL   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE VPS10P DOMAIN OF HUMAN SORTILIN/            
REMARK 900 NTS3 IN COMPLEX WITH AF40431                                         
DBREF  4N7E A   45   723  UNP    Q99523   SORT_HUMAN      78    756             
SEQADV 4N7E MET A  617  UNP  Q99523    VAL   650 VARIANT                        
SEQADV 4N7E GLY A  724  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E SER A  725  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E ALA A  726  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E MET A  727  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E ILE A  728  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E GLU A  729  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E GLY A  730  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E ARG A  731  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E GLY A  732  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E VAL A  733  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E GLY A  734  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E HIS A  735  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E HIS A  736  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E HIS A  737  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E HIS A  738  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E HIS A  739  UNP  Q99523              EXPRESSION TAG                 
SEQADV 4N7E HIS A  740  UNP  Q99523              EXPRESSION TAG                 
SEQRES   1 A  696  SER ALA PRO GLY GLU ASP GLU GLU CYS GLY ARG VAL ARG          
SEQRES   2 A  696  ASP PHE VAL ALA LYS LEU ALA ASN ASN THR HIS GLN HIS          
SEQRES   3 A  696  VAL PHE ASP ASP LEU ARG GLY SER VAL SER LEU SER TRP          
SEQRES   4 A  696  VAL GLY ASP SER THR GLY VAL ILE LEU VAL LEU THR THR          
SEQRES   5 A  696  PHE HIS VAL PRO LEU VAL ILE MET THR PHE GLY GLN SER          
SEQRES   6 A  696  LYS LEU TYR ARG SER GLU ASP TYR GLY LYS ASN PHE LYS          
SEQRES   7 A  696  ASP ILE THR ASP LEU ILE ASN ASN THR PHE ILE ARG THR          
SEQRES   8 A  696  GLU PHE GLY MET ALA ILE GLY PRO GLU ASN SER GLY LYS          
SEQRES   9 A  696  VAL VAL LEU THR ALA GLU VAL SER GLY GLY SER ARG GLY          
SEQRES  10 A  696  GLY ARG ILE PHE ARG SER SER ASP PHE ALA LYS ASN PHE          
SEQRES  11 A  696  VAL GLN THR ASP LEU PRO PHE HIS PRO LEU THR GLN MET          
SEQRES  12 A  696  MET TYR SER PRO GLN ASN SER ASP TYR LEU LEU ALA LEU          
SEQRES  13 A  696  SER THR GLU ASN GLY LEU TRP VAL SER LYS ASN PHE GLY          
SEQRES  14 A  696  GLY LYS TRP GLU GLU ILE HIS LYS ALA VAL CYS LEU ALA          
SEQRES  15 A  696  LYS TRP GLY SER ASP ASN THR ILE PHE PHE THR THR TYR          
SEQRES  16 A  696  ALA ASN GLY SER CYS LYS ALA ASP LEU GLY ALA LEU GLU          
SEQRES  17 A  696  LEU TRP ARG THR SER ASP LEU GLY LYS SER PHE LYS THR          
SEQRES  18 A  696  ILE GLY VAL LYS ILE TYR SER PHE GLY LEU GLY GLY ARG          
SEQRES  19 A  696  PHE LEU PHE ALA SER VAL MET ALA ASP LYS ASP THR THR          
SEQRES  20 A  696  ARG ARG ILE HIS VAL SER THR ASP GLN GLY ASP THR TRP          
SEQRES  21 A  696  SER MET ALA GLN LEU PRO SER VAL GLY GLN GLU GLN PHE          
SEQRES  22 A  696  TYR SER ILE LEU ALA ALA ASN ASP ASP MET VAL PHE MET          
SEQRES  23 A  696  HIS VAL ASP GLU PRO GLY ASP THR GLY PHE GLY THR ILE          
SEQRES  24 A  696  PHE THR SER ASP ASP ARG GLY ILE VAL TYR SER LYS SER          
SEQRES  25 A  696  LEU ASP ARG HIS LEU TYR THR THR THR GLY GLY GLU THR          
SEQRES  26 A  696  ASP PHE THR ASN VAL THR SER LEU ARG GLY VAL TYR ILE          
SEQRES  27 A  696  THR SER VAL LEU SER GLU ASP ASN SER ILE GLN THR MET          
SEQRES  28 A  696  ILE THR PHE ASP GLN GLY GLY ARG TRP THR HIS LEU ARG          
SEQRES  29 A  696  LYS PRO GLU ASN SER GLU CYS ASP ALA THR ALA LYS ASN          
SEQRES  30 A  696  LYS ASN GLU CYS SER LEU HIS ILE HIS ALA SER TYR SER          
SEQRES  31 A  696  ILE SER GLN LYS LEU ASN VAL PRO MET ALA PRO LEU SER          
SEQRES  32 A  696  GLU PRO ASN ALA VAL GLY ILE VAL ILE ALA HIS GLY SER          
SEQRES  33 A  696  VAL GLY ASP ALA ILE SER VAL MET VAL PRO ASP VAL TYR          
SEQRES  34 A  696  ILE SER ASP ASP GLY GLY TYR SER TRP THR LYS MET LEU          
SEQRES  35 A  696  GLU GLY PRO HIS TYR TYR THR ILE LEU ASP SER GLY GLY          
SEQRES  36 A  696  ILE ILE VAL ALA ILE GLU HIS SER SER ARG PRO ILE ASN          
SEQRES  37 A  696  VAL ILE LYS PHE SER THR ASP GLU GLY GLN CYS TRP GLN          
SEQRES  38 A  696  THR TYR THR PHE THR ARG ASP PRO ILE TYR PHE THR GLY          
SEQRES  39 A  696  LEU ALA SER GLU PRO GLY ALA ARG SER MET ASN ILE SER          
SEQRES  40 A  696  ILE TRP GLY PHE THR GLU SER PHE LEU THR SER GLN TRP          
SEQRES  41 A  696  VAL SER TYR THR ILE ASP PHE LYS ASP ILE LEU GLU ARG          
SEQRES  42 A  696  ASN CYS GLU GLU LYS ASP TYR THR ILE TRP LEU ALA HIS          
SEQRES  43 A  696  SER THR ASP PRO GLU ASP TYR GLU ASP GLY CYS ILE LEU          
SEQRES  44 A  696  GLY TYR LYS GLU GLN PHE LEU ARG LEU ARG LYS SER SER          
SEQRES  45 A  696  MET CYS GLN ASN GLY ARG ASP TYR VAL VAL THR LYS GLN          
SEQRES  46 A  696  PRO SER ILE CYS LEU CYS SER LEU GLU ASP PHE LEU CYS          
SEQRES  47 A  696  ASP PHE GLY TYR TYR ARG PRO GLU ASN ASP SER LYS CYS          
SEQRES  48 A  696  VAL GLU GLN PRO GLU LEU LYS GLY HIS ASP LEU GLU PHE          
SEQRES  49 A  696  CYS LEU TYR GLY ARG GLU GLU HIS LEU THR THR ASN GLY          
SEQRES  50 A  696  TYR ARG LYS ILE PRO GLY ASP LYS CYS GLN GLY GLY VAL          
SEQRES  51 A  696  ASN PRO VAL ARG GLU VAL LYS ASP LEU LYS LYS LYS CYS          
SEQRES  52 A  696  THR SER ASN PHE LEU SER PRO GLU LYS GLN ASN SER LYS          
SEQRES  53 A  696  SER ASN SER GLY SER ALA MET ILE GLU GLY ARG GLY VAL          
SEQRES  54 A  696  GLY HIS HIS HIS HIS HIS HIS                                  
MODRES 4N7E ASN A  373  ASN  GLYCOSYLATION SITE                                 
MODRES 4N7E ASN A  549  ASN  GLYCOSYLATION SITE                                 
HET    NAG  A 801      14                                                       
HET    NAG  A 802      14                                                       
HET    BMA  A 803      11                                                       
HET    NAG  A 804      14                                                       
HET    NAG  A 805      14                                                       
HET    PGE  A 806      10                                                       
HET    2JQ  A 807      23                                                       
HETNAM     NAG N-ACETYL-D-GLUCOSAMINE                                           
HETNAM     BMA BETA-D-MANNOSE                                                   
HETNAM     PGE TRIETHYLENE GLYCOL                                               
HETNAM     2JQ 2-[(6-METHYLPYRIDIN-2-YL)CARBAMOYL]-5-                           
HETNAM   2 2JQ  (TRIFLUOROMETHYL)BENZOIC ACID                                   
FORMUL   2  NAG    4(C8 H15 N O6)                                               
FORMUL   2  BMA    C6 H12 O6                                                    
FORMUL   4  PGE    C6 H14 O4                                                    
FORMUL   5  2JQ    C15 H11 F3 N2 O3                                             
FORMUL   6  HOH   *51(H2 O)                                                     
HELIX    1   1 ASP A   58  ASN A   66  1                                   9    
HELIX    2   2 THR A  125  ASN A  129  5                                   5    
HELIX    3   3 ALA A  431  GLN A  437  1                                   7    
HELIX    4   4 ASP A  496  GLY A  499  5                                   4    
HELIX    5   5 GLU A  580  LYS A  582  5                                   3    
HELIX    6   6 SER A  636  GLU A  638  5                                   3    
HELIX    7   7 LYS A  662  GLY A  672  1                                  11    
HELIX    8   8 ARG A  673  HIS A  676  5                                   4    
HELIX    9   9 LEU A  703  SER A  709  1                                   7    
SHEET    1   A 4 THR A  67  VAL A  71  0                                        
SHEET    2   A 4 TRP A 564  ASP A 570 -1  O  THR A 568   N  HIS A  68           
SHEET    3   A 4 ASN A 549  PHE A 555 -1  N  GLY A 554   O  VAL A 565           
SHEET    4   A 4 TYR A 535  ALA A 540 -1  N  TYR A 535   O  PHE A 555           
SHEET    1   B 4 SER A  78  VAL A  84  0                                        
SHEET    2   B 4 VAL A  90  THR A  96 -1  O  LEU A  94   N  SER A  80           
SHEET    3   B 4 SER A 109  SER A 114 -1  O  LYS A 110   N  THR A  95           
SHEET    4   B 4 LYS A 122  ASP A 123 -1  O  LYS A 122   N  ARG A 113           
SHEET    1   C 4 MET A 139  ILE A 141  0                                        
SHEET    2   C 4 VAL A 149  ALA A 153 -1  O  VAL A 150   N  ALA A 140           
SHEET    3   C 4 ARG A 163  SER A 167 -1  O  SER A 167   N  VAL A 149           
SHEET    4   C 4 VAL A 175  ASP A 178 -1  O  VAL A 175   N  ARG A 166           
SHEET    1   D 4 MET A 188  TYR A 189  0                                        
SHEET    2   D 4 LEU A 197  LEU A 200 -1  O  LEU A 198   N  MET A 188           
SHEET    3   D 4 LEU A 206  SER A 209 -1  O  TRP A 207   N  ALA A 199           
SHEET    4   D 4 GLU A 217  HIS A 220 -1  O  HIS A 220   N  LEU A 206           
SHEET    1   E 7 VAL A 223  TRP A 228  0                                        
SHEET    2   E 7 ILE A 234  THR A 238 -1  O  PHE A 235   N  LYS A 227           
SHEET    3   E 7 LEU A 251  THR A 256 -1  O  TRP A 254   N  PHE A 236           
SHEET    4   E 7 LYS A 264  GLY A 276 -1  O  ILE A 270   N  LEU A 251           
SHEET    5   E 7 PHE A 279  MET A 285 -1  O  SER A 283   N  TYR A 271           
SHEET    6   E 7 ARG A 292  SER A 297 -1  O  HIS A 295   N  ALA A 282           
SHEET    7   E 7 SER A 305  MET A 306 -1  O  SER A 305   N  VAL A 296           
SHEET    1   F 4 TYR A 318  ASN A 324  0                                        
SHEET    2   F 4 MET A 327  ASP A 333 -1  O  HIS A 331   N  SER A 319           
SHEET    3   F 4 PHE A 340  SER A 346 -1  O  PHE A 344   N  MET A 330           
SHEET    4   F 4 TYR A 353  LEU A 361 -1  O  HIS A 360   N  GLY A 341           
SHEET    1   G 4 THR A 372  ASN A 373  0                                        
SHEET    2   G 4 TYR A 381  LEU A 386 -1  O  ILE A 382   N  THR A 372           
SHEET    3   G 4 ILE A 392  THR A 397 -1  O  MET A 395   N  THR A 383           
SHEET    4   G 4 TRP A 404  THR A 405 -1  O  THR A 405   N  ILE A 396           
SHEET    1   H 5 LEU A 407  ARG A 408  0                                        
SHEET    2   H 5 SER A 426  ILE A 429 -1  O  LEU A 427   N  LEU A 407           
SHEET    3   H 5 VAL A 455  GLY A 462 -1  O  SER A 460   N  HIS A 428           
SHEET    4   H 5 ASP A 471  SER A 475 -1  O  TYR A 473   N  ALA A 457           
SHEET    5   H 5 THR A 483  LEU A 486 -1  O  LEU A 486   N  VAL A 472           
SHEET    1   I 4 HIS A 490  LEU A 495  0                                        
SHEET    2   I 4 ILE A 500  GLU A 505 -1  O  ILE A 504   N  TYR A 491           
SHEET    3   I 4 VAL A 513  SER A 517 -1  O  LYS A 515   N  ALA A 503           
SHEET    4   I 4 GLN A 525  THR A 528 -1  O  TYR A 527   N  ILE A 514           
SHEET    1   J 3 TYR A 584  LEU A 588  0                                        
SHEET    2   J 3 TYR A 605  LEU A 612 -1  O  PHE A 609   N  TRP A 587           
SHEET    3   J 3 THR A 627  ILE A 632 -1  O  GLN A 629   N  GLN A 608           
SHEET    1   K 2 PHE A 640  CYS A 642  0                                        
SHEET    2   K 2 TYR A 682  LYS A 684 -1  O  ARG A 683   N  LEU A 641           
SHEET    1   L 2 TYR A 646  TYR A 647  0                                        
SHEET    2   L 2 VAL A 656  GLU A 657 -1  O  VAL A 656   N  TYR A 647           
SHEET    1   M 2 THR A 678  THR A 679  0                                        
SHEET    2   M 2 LYS A 701  ASP A 702 -1  O  LYS A 701   N  THR A 679           
SSBOND   1 CYS A  224    CYS A  244                          1555   1555  2.05  
SSBOND   2 CYS A  415    CYS A  425                          1555   1555  2.06  
SSBOND   3 CYS A  579    CYS A  618                          1555   1555  2.05  
SSBOND   4 CYS A  601    CYS A  633                          1555   1555  2.02  
SSBOND   5 CYS A  635    CYS A  690                          1555   1555  2.07  
SSBOND   6 CYS A  642    CYS A  655                          1555   1555  2.09  
SSBOND   7 CYS A  669    CYS A  707                          1555   1555  2.02  
LINK         ND2 ASN A 373                 C1  NAG A 801     1555   1555  1.43  
LINK         O4  NAG A 801                 C1  NAG A 802     1555   1555  1.44  
LINK         ND2 ASN A 549                 C1  NAG A 804     1555   1555  1.45  
LINK         O4  NAG A 804                 C1  NAG A 805     1555   1555  1.45  
LINK         O4  NAG A 802                 C1  BMA A 803     1555   1555  1.45  
CISPEP   1 LEU A   75    ARG A   76          0         0.88                     
SITE     1 AC1  3 VAL A  79  TRP A 553  TRP A 564                               
SITE     1 AC2 11 TYR A 271  PHE A 273  GLY A 274  PHE A 281                    
SITE     2 AC2 11 ALA A 282  SER A 283  ARG A 292  ILE A 294                    
SITE     3 AC2 11 PHE A 317  TYR A 318  TYR A 362                               
SITE     1 AC3 10 ALA A 322  ALA A 323  ASN A 324  ASN A 373                    
SITE     2 AC3 10 THR A 375  TYR A 381  HOH A1003  HOH A1005                    
SITE     3 AC3 10 HOH A1006  HOH A1033                                          
SITE     1 AC4  9 ASP A 116  TYR A 117  LYS A 119  SER A 547                    
SITE     2 AC4  9 MET A 548  ASN A 549  ASP A 570  ARG A 622                    
SITE     3 AC4  9 HOH A1026                                                     
CRYST1  161.948   77.402  111.176  90.00 127.06  90.00 C 1 2 1       4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.006175  0.000000  0.004664        0.00000                         
SCALE2      0.000000  0.012920  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.011272        0.00000