PDB Short entry for 4NB6 HEADER TRANSCRIPTION 22-OCT-13 4NB6 TITLE CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF RORC WITH T0901317 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 262-507; COMPND 5 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 6 GROUP F MEMBER 3, RETINOID-RELATED ORPHAN RECEPTOR-GAMMA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1F3, RORC, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52B KEYWDS ALPHA-HELICAL, TRANSCRIPTION FACTOR, NUCLEUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.G.HYMOWITZ,G.BOENIG-DE LEON REVDAT 3 20-SEP-23 4NB6 1 REMARK SEQADV REVDAT 2 18-DEC-13 4NB6 1 JRNL REVDAT 1 27-NOV-13 4NB6 0 JRNL AUTH B.P.FAUBER,G.DE LEON BOENIG,B.BURTON,C.EIDENSCHENK, JRNL AUTH 2 C.EVERETT,A.GOBBI,S.G.HYMOWITZ,A.R.JOHNSON,M.LIIMATTA, JRNL AUTH 3 P.LOCKEY,M.NORMAN,W.OUYANG,O.RENE,H.WONG JRNL TITL STRUCTURE-BASED DESIGN OF SUBSTITUTED JRNL TITL 2 HEXAFLUOROISOPROPANOL-ARYLSULFONAMIDES AS MODULATORS OF JRNL TITL 3 RORC. JRNL REF BIOORG.MED.CHEM.LETT. V. 23 6604 2013 JRNL REFN ISSN 0960-894X JRNL PMID 24239186 JRNL DOI 10.1016/J.BMCL.2013.10.054 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 14362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.75000 REMARK 3 B22 (A**2) : 2.75000 REMARK 3 B33 (A**2) : -4.12000 REMARK 3 B12 (A**2) : 1.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.336 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3783 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5116 ; 0.981 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 3.570 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;33.286 ;23.048 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 698 ;18.625 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.616 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2806 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 464 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4404 3.9864 -2.3195 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.0464 REMARK 3 T33: 0.0756 T12: 0.0484 REMARK 3 T13: -0.0114 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.9111 L22: 5.8618 REMARK 3 L33: 2.5500 L12: -3.1813 REMARK 3 L13: -2.2409 L23: 2.2538 REMARK 3 S TENSOR REMARK 3 S11: -0.3855 S12: -0.2295 S13: 0.0358 REMARK 3 S21: 0.7472 S22: 0.2971 S23: 0.1713 REMARK 3 S31: 0.4489 S32: -0.0091 S33: 0.0884 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 246 B 464 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6945 0.6934 31.2581 REMARK 3 T TENSOR REMARK 3 T11: 0.4589 T22: 0.1455 REMARK 3 T33: 0.0921 T12: -0.0217 REMARK 3 T13: 0.0009 T23: -0.1034 REMARK 3 L TENSOR REMARK 3 L11: 3.1491 L22: 5.9710 REMARK 3 L33: 2.1725 L12: 2.7174 REMARK 3 L13: 2.4295 L23: 2.0259 REMARK 3 S TENSOR REMARK 3 S11: -0.4006 S12: 0.0949 S13: -0.0182 REMARK 3 S21: -0.9124 S22: 0.2674 S23: 0.0062 REMARK 3 S31: -0.4923 S32: -0.1001 S33: 0.1331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.76500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3L0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS WERE COMPOSED OF 1UL OF RORC REMARK 280 -AGONIST COMPLEX (20 MM TRISH-HCL PH 7.0, 200 MM NACL, 4% REMARK 280 GLYCEROL, 5 MM DTT) PLUS 1 UL OF WELL SOLUTION (400 MM NA/K REMARK 280 TARTRATE), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.92567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.85133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.88850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 104.81417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.96283 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 ALA A 241 REMARK 465 PRO A 242 REMARK 465 TYR A 243 REMARK 465 ALA A 244 REMARK 465 GLN A 466 REMARK 465 HIS A 467 REMARK 465 LEU A 468 REMARK 465 HIS A 469 REMARK 465 PRO A 470 REMARK 465 ILE A 471 REMARK 465 VAL A 472 REMARK 465 VAL A 473 REMARK 465 GLN A 474 REMARK 465 ALA A 475 REMARK 465 ALA A 476 REMARK 465 PHE A 477 REMARK 465 PRO A 478 REMARK 465 PRO A 479 REMARK 465 LEU A 480 REMARK 465 TYR A 481 REMARK 465 LYS A 482 REMARK 465 GLU A 483 REMARK 465 LEU A 484 REMARK 465 PHE A 485 REMARK 465 SER A 486 REMARK 465 GLY A 487 REMARK 465 ASN A 488 REMARK 465 SER A 489 REMARK 465 GLY B 239 REMARK 465 SER B 240 REMARK 465 ALA B 241 REMARK 465 PRO B 242 REMARK 465 TYR B 243 REMARK 465 ALA B 244 REMARK 465 HIS B 467 REMARK 465 LEU B 468 REMARK 465 HIS B 469 REMARK 465 PRO B 470 REMARK 465 ILE B 471 REMARK 465 VAL B 472 REMARK 465 VAL B 473 REMARK 465 GLN B 474 REMARK 465 ALA B 475 REMARK 465 ALA B 476 REMARK 465 PHE B 477 REMARK 465 PRO B 478 REMARK 465 PRO B 479 REMARK 465 LEU B 480 REMARK 465 TYR B 481 REMARK 465 LYS B 482 REMARK 465 GLU B 483 REMARK 465 LEU B 484 REMARK 465 PHE B 485 REMARK 465 SER B 486 REMARK 465 GLY B 487 REMARK 465 ASN B 488 REMARK 465 SER B 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 423 CB SER B 440 4654 2.15 REMARK 500 NE2 HIS A 437 OH TYR B 423 4654 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 265 -60.05 59.94 REMARK 500 GLN B 265 -60.60 60.54 REMARK 500 GLU B 414 59.25 -94.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 444 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 444 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PQC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LXR BETA WITH THE SAME COMPOUND REMARK 900 RELATED ID: 1PQ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LXR BETA WITH THE SAME COMPOUND REMARK 900 RELATED ID: 2O91 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PREGNANE X RECEPTOR WITH THE SAME COMPOUND DBREF 4NB6 A 241 486 UNP P51449 RORG_HUMAN 262 507 DBREF 4NB6 B 241 486 UNP P51449 RORG_HUMAN 262 507 SEQADV 4NB6 GLY A 239 UNP P51449 EXPRESSION TAG SEQADV 4NB6 SER A 240 UNP P51449 EXPRESSION TAG SEQADV 4NB6 GLY A 487 UNP P51449 EXPRESSION TAG SEQADV 4NB6 ASN A 488 UNP P51449 EXPRESSION TAG SEQADV 4NB6 SER A 489 UNP P51449 EXPRESSION TAG SEQADV 4NB6 GLY B 239 UNP P51449 EXPRESSION TAG SEQADV 4NB6 SER B 240 UNP P51449 EXPRESSION TAG SEQADV 4NB6 GLY B 487 UNP P51449 EXPRESSION TAG SEQADV 4NB6 ASN B 488 UNP P51449 EXPRESSION TAG SEQADV 4NB6 SER B 489 UNP P51449 EXPRESSION TAG SEQRES 1 A 251 GLY SER ALA PRO TYR ALA SER LEU THR GLU ILE GLU HIS SEQRES 2 A 251 LEU VAL GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS SEQRES 3 A 251 GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN SEQRES 4 A 251 ILE PHE SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SEQRES 5 A 251 SER MET TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU SEQRES 6 A 251 THR GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG SEQRES 7 A 251 LEU SER GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE SEQRES 8 A 251 VAL LEU LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL SEQRES 9 A 251 ARG MET CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL SEQRES 10 A 251 PHE PHE GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG SEQRES 11 A 251 ALA LEU GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP SEQRES 12 A 251 PHE SER HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP SEQRES 13 A 251 GLU ILE ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA SEQRES 14 A 251 HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN SEQRES 15 A 251 LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SEQRES 16 A 251 CYS LYS THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO SEQRES 17 A 251 PRO LYS GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL SEQRES 18 A 251 GLU ARG LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL SEQRES 19 A 251 VAL GLN ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SEQRES 20 A 251 SER GLY ASN SER SEQRES 1 B 251 GLY SER ALA PRO TYR ALA SER LEU THR GLU ILE GLU HIS SEQRES 2 B 251 LEU VAL GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS SEQRES 3 B 251 GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN SEQRES 4 B 251 ILE PHE SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SEQRES 5 B 251 SER MET TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU SEQRES 6 B 251 THR GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG SEQRES 7 B 251 LEU SER GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE SEQRES 8 B 251 VAL LEU LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL SEQRES 9 B 251 ARG MET CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL SEQRES 10 B 251 PHE PHE GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG SEQRES 11 B 251 ALA LEU GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP SEQRES 12 B 251 PHE SER HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP SEQRES 13 B 251 GLU ILE ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA SEQRES 14 B 251 HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN SEQRES 15 B 251 LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SEQRES 16 B 251 CYS LYS THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO SEQRES 17 B 251 PRO LYS GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL SEQRES 18 B 251 GLU ARG LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL SEQRES 19 B 251 VAL GLN ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SEQRES 20 B 251 SER GLY ASN SER HET 444 A 501 42 HET 444 B 501 42 HETNAM 444 N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1- HETNAM 2 444 HYDROXY-1-(TRIFLUOROMETHYL) HETNAM 3 444 ETHYL]PHENYL}BENZENESULFONAMIDE FORMUL 3 444 2(C17 H12 F9 N O3 S) FORMUL 5 HOH *2(H2 O) HELIX 1 1 SER A 245 THR A 263 1 19 HELIX 2 2 ARG A 267 GLN A 274 1 8 HELIX 3 3 SER A 280 LYS A 290 1 11 HELIX 4 4 SER A 291 ARG A 316 1 26 HELIX 5 5 CYS A 324 CYS A 345 1 22 HELIX 6 6 GLY A 363 GLY A 371 5 9 HELIX 7 7 CYS A 372 ALA A 388 1 17 HELIX 8 8 SER A 392 ILE A 405 1 14 HELIX 9 9 GLU A 414 HIS A 437 1 24 HELIX 10 10 SER A 440 LEU A 445 1 6 HELIX 11 11 GLY A 449 PHE A 465 1 17 HELIX 12 12 LEU B 246 THR B 263 1 18 HELIX 13 13 ARG B 267 GLN B 274 1 8 HELIX 14 14 SER B 280 LYS B 290 1 11 HELIX 15 15 SER B 291 ARG B 316 1 26 HELIX 16 16 CYS B 324 CYS B 345 1 22 HELIX 17 17 GLY B 363 GLY B 371 5 9 HELIX 18 18 CYS B 372 ALA B 388 1 17 HELIX 19 19 SER B 392 ILE B 405 1 14 HELIX 20 20 GLU B 414 THR B 436 1 23 HELIX 21 21 SER B 440 LEU B 445 1 6 HELIX 22 22 GLY B 449 GLN B 466 1 18 SHEET 1 A 3 TYR A 348 ASN A 349 0 SHEET 2 A 3 THR A 354 PHE A 357 -1 O THR A 354 N ASN A 349 SHEET 3 A 3 LYS A 360 GLY A 362 -1 O LYS A 360 N PHE A 357 SHEET 1 B 3 TYR B 348 ASN B 349 0 SHEET 2 B 3 THR B 354 PHE B 357 -1 O THR B 354 N ASN B 349 SHEET 3 B 3 LYS B 360 GLY B 362 -1 O LYS B 360 N PHE B 357 SITE 1 AC1 14 TRP A 296 CYS A 299 HIS A 302 LEU A 303 SITE 2 AC1 14 MET A 337 VAL A 340 MET A 344 VAL A 355 SITE 3 AC1 14 PHE A 357 PHE A 367 LEU A 375 ILE A 379 SITE 4 AC1 14 HIS A 458 LEU A 462 SITE 1 AC2 15 TRP B 296 CYS B 299 HIS B 302 LEU B 303 SITE 2 AC2 15 ALA B 306 MET B 337 VAL B 340 MET B 344 SITE 3 AC2 15 VAL B 355 PHE B 357 PHE B 367 LEU B 375 SITE 4 AC2 15 ILE B 379 HIS B 458 LEU B 462 CRYST1 99.534 99.534 125.777 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010047 0.005801 0.000000 0.00000 SCALE2 0.000000 0.011601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007951 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.993306 0.114302 0.016698 -0.59003 1 MTRIX2 2 0.114172 -0.993424 0.008525 0.09502 1 MTRIX3 2 0.017563 -0.006561 -0.999824 28.27436 1