PDB Short entry for 4NC8 HEADER TRANSCRIPTION 24-OCT-13 4NC8 TITLE N-TERMINAL DOMAIN OF DELTA-SUBUNIT OF RNA POLYMERASE COMPLEXED WITH TITLE 2 NICKEL IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT DELTA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-92; COMPND 5 SYNONYM: RNAP DELTA FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: RPOE, BSU37160; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.DEMO,V.PAPOUSKOVA,J.KOMAREK,H.SANDEROVA,A.RABATINOVA,L.KRASNY, AUTHOR 2 L.ZIDEK,V.SKLENAR,M.WIMMEROVA REVDAT 3 20-SEP-23 4NC8 1 REMARK SEQADV LINK REVDAT 2 20-AUG-14 4NC8 1 JRNL REVDAT 1 02-JUL-14 4NC8 0 JRNL AUTH G.DEMO,V.PAPOUSKOVA,J.KOMAREK,P.KADERAVEK,O.OTRUSINOVA, JRNL AUTH 2 P.SRB,A.RABATINOVA,L.KRASNY,L.ZIDEK,V.SKLENAR,M.WIMMEROVA JRNL TITL X-RAY VS. NMR STRUCTURE OF N-TERMINAL DOMAIN OF JRNL TITL 2 DELTA-SUBUNIT OF RNA POLYMERASE. JRNL REF J.STRUCT.BIOL. V. 187 174 2014 JRNL REFN ISSN 1047-8477 JRNL PMID 24937760 JRNL DOI 10.1016/J.JSB.2014.06.001 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 9317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.99000 REMARK 3 B22 (A**2) : -2.62000 REMARK 3 B33 (A**2) : -2.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1351 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1292 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1821 ; 1.540 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2981 ; 0.784 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 6.474 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;39.788 ;25.068 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 255 ;15.945 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.340 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1510 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 313 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9871 REMARK 200 MONOCHROMATOR : KMC-2 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9786 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 41.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4NC7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM/POTASSIUM PHOSPHATE, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290.15K. 1.8M SODIUM/ REMARK 280 POTASSIUM PHOSPHATE, PH 8.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.46400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.46400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.73100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.81800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.73100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.81800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.46400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.73100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.81800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.46400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.73100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.81800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -41.46400 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -41.46400 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -41.46400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ILE A 2 REMARK 465 PRO A 82 REMARK 465 TYR A 83 REMARK 465 ASP A 84 REMARK 465 GLN A 85 REMARK 465 LEU A 86 REMARK 465 ASP A 87 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 THR A 90 REMARK 465 GLN A 91 REMARK 465 LEU A 92 REMARK 465 GLU A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 GLY B 1 REMARK 465 ILE B 2 REMARK 465 PRO B 82 REMARK 465 TYR B 83 REMARK 465 ASP B 84 REMARK 465 GLN B 85 REMARK 465 LEU B 86 REMARK 465 ASP B 87 REMARK 465 GLU B 88 REMARK 465 GLU B 89 REMARK 465 THR B 90 REMARK 465 GLN B 91 REMARK 465 LEU B 92 REMARK 465 GLU B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 25 -72.88 -64.22 REMARK 500 SER A 79 22.46 -74.13 REMARK 500 SER B 41 -70.51 -59.27 REMARK 500 LEU B 42 -37.99 -35.02 REMARK 500 SER B 71 30.78 -94.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 61 O REMARK 620 2 ASN B 62 O 80.6 REMARK 620 3 ASP B 64 O 80.9 108.7 REMARK 620 4 PHE B 67 O 98.2 162.3 88.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KRC RELATED DB: PDB REMARK 900 THE SAME PROTEIN , STRUCTURE SOLVED BY NMR. REMARK 900 RELATED ID: 4NC7 RELATED DB: PDB DBREF 4NC8 A 1 91 UNP P12464 RPOE_BACSU 2 92 DBREF 4NC8 B 1 91 UNP P12464 RPOE_BACSU 2 92 SEQADV 4NC8 LEU A 92 UNP P12464 EXPRESSION TAG SEQADV 4NC8 GLU A 93 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS A 94 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS A 95 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS A 96 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS A 97 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS A 98 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS A 99 UNP P12464 EXPRESSION TAG SEQADV 4NC8 LEU B 92 UNP P12464 EXPRESSION TAG SEQADV 4NC8 GLU B 93 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS B 94 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS B 95 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS B 96 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS B 97 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS B 98 UNP P12464 EXPRESSION TAG SEQADV 4NC8 HIS B 99 UNP P12464 EXPRESSION TAG SEQRES 1 A 99 GLY ILE LYS GLN TYR SER GLN GLU GLU LEU LYS GLU MET SEQRES 2 A 99 ALA LEU VAL GLU ILE ALA HIS GLU LEU PHE GLU GLU HIS SEQRES 3 A 99 LYS LYS PRO VAL PRO PHE GLN GLU LEU LEU ASN GLU ILE SEQRES 4 A 99 ALA SER LEU LEU GLY VAL LYS LYS GLU GLU LEU GLY ASP SEQRES 5 A 99 ARG ILE ALA GLN PHE TYR THR ASP LEU ASN ILE ASP GLY SEQRES 6 A 99 ARG PHE LEU ALA LEU SER ASP GLN THR TRP GLY LEU ARG SEQRES 7 A 99 SER TRP TYR PRO TYR ASP GLN LEU ASP GLU GLU THR GLN SEQRES 8 A 99 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 GLY ILE LYS GLN TYR SER GLN GLU GLU LEU LYS GLU MET SEQRES 2 B 99 ALA LEU VAL GLU ILE ALA HIS GLU LEU PHE GLU GLU HIS SEQRES 3 B 99 LYS LYS PRO VAL PRO PHE GLN GLU LEU LEU ASN GLU ILE SEQRES 4 B 99 ALA SER LEU LEU GLY VAL LYS LYS GLU GLU LEU GLY ASP SEQRES 5 B 99 ARG ILE ALA GLN PHE TYR THR ASP LEU ASN ILE ASP GLY SEQRES 6 B 99 ARG PHE LEU ALA LEU SER ASP GLN THR TRP GLY LEU ARG SEQRES 7 B 99 SER TRP TYR PRO TYR ASP GLN LEU ASP GLU GLU THR GLN SEQRES 8 B 99 LEU GLU HIS HIS HIS HIS HIS HIS HET NI A 101 1 HET NI B 101 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *20(H2 O) HELIX 1 1 SER A 6 LYS A 11 1 6 HELIX 2 2 ALA A 14 LYS A 27 1 14 HELIX 3 3 PRO A 31 LEU A 43 1 13 HELIX 4 4 LYS A 46 GLY A 51 1 6 HELIX 5 5 ASP A 52 ASP A 64 1 13 HELIX 6 6 LEU A 77 TYR A 81 5 5 HELIX 7 7 SER B 6 LYS B 11 1 6 HELIX 8 8 ALA B 14 LYS B 27 1 14 HELIX 9 9 PRO B 31 LEU B 43 1 13 HELIX 10 10 LYS B 46 GLY B 51 5 6 HELIX 11 11 ASP B 52 ASP B 64 1 13 HELIX 12 12 LEU B 77 TYR B 81 5 5 LINK O LEU A 61 NI NI A 101 1555 1555 2.68 LINK O LEU B 61 NI NI B 101 1555 1555 2.75 LINK O ASN B 62 NI NI B 101 1555 1555 2.58 LINK O ASP B 64 NI NI B 101 1555 1555 2.64 LINK O PHE B 67 NI NI B 101 1555 1555 2.75 SITE 1 AC1 5 LEU A 61 ASN A 62 ASP A 64 PHE A 67 SITE 2 AC1 5 ASN B 62 SITE 1 AC2 6 ASN A 62 HOH A 204 LEU B 61 ASN B 62 SITE 2 AC2 6 ASP B 64 PHE B 67 CRYST1 39.462 109.636 82.928 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025341 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012059 0.00000