PDB Short entry for 4NDI HEADER DNA BINDING PROTEIN/RNA/DNA 26-OCT-13 4NDI TITLE HUMAN APRATAXIN (APTX) AOA1 VARIANT K197Q BOUND TO RNA-DNA, AMP, AND TITLE 2 ZN - PRODUCT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: APRATAXIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FORKHEAD-ASSOCIATED DOMAIN HISTIDINE TRIAD-LIKE PROTEIN, COMPND 5 FHA-HIT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3'; COMPND 10 CHAIN: D, G; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3'; COMPND 14 CHAIN: E, H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APTX, AXA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, DNA REPAIR, 5'-DNA END PROCESSING, HISTIDINE KEYWDS 2 TRIAD DOMAIN, HIT DOMAIN, ZINC FINGER, 5'-DNA END RECOGNITION, DNA KEYWDS 3 BINDING PROTEIN-RNA-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.SCHELLENBERG,P.S.TUMBALE,R.S.WILLIAMS REVDAT 4 20-SEP-23 4NDI 1 REMARK SEQADV LINK REVDAT 3 05-FEB-14 4NDI 1 JRNL REVDAT 2 15-JAN-14 4NDI 1 JRNL REVDAT 1 18-DEC-13 4NDI 0 JRNL AUTH P.TUMBALE,J.S.WILLIAMS,M.J.SCHELLENBERG,T.A.KUNKEL, JRNL AUTH 2 R.S.WILLIAMS JRNL TITL APRATAXIN RESOLVES ADENYLATED RNA-DNA JUNCTIONS TO MAINTAIN JRNL TITL 2 GENOME INTEGRITY. JRNL REF NATURE V. 506 111 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 24362567 JRNL DOI 10.1038/NATURE12824 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2235 - 4.7854 0.99 2779 154 0.1571 0.1566 REMARK 3 2 4.7854 - 3.7994 1.00 2657 155 0.1249 0.1485 REMARK 3 3 3.7994 - 3.3195 1.00 2607 148 0.1302 0.1426 REMARK 3 4 3.3195 - 3.0161 1.00 2651 127 0.1399 0.1812 REMARK 3 5 3.0161 - 2.8000 1.00 2609 137 0.1649 0.1875 REMARK 3 6 2.8000 - 2.6349 1.00 2608 134 0.1615 0.1840 REMARK 3 7 2.6349 - 2.5030 1.00 2568 139 0.1600 0.1786 REMARK 3 8 2.5030 - 2.3941 1.00 2570 140 0.1631 0.2321 REMARK 3 9 2.3941 - 2.3019 1.00 2611 137 0.1679 0.1970 REMARK 3 10 2.3019 - 2.2225 1.00 2547 145 0.1598 0.2196 REMARK 3 11 2.2225 - 2.1530 1.00 2574 122 0.1638 0.1898 REMARK 3 12 2.1530 - 2.0915 1.00 2598 136 0.1662 0.1999 REMARK 3 13 2.0915 - 2.0364 1.00 2523 140 0.1699 0.2268 REMARK 3 14 2.0364 - 1.9867 1.00 2581 130 0.1923 0.2177 REMARK 3 15 1.9867 - 1.9416 1.00 2547 139 0.1942 0.2563 REMARK 3 16 1.9416 - 1.9000 0.99 2577 121 0.2039 0.2648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4195 REMARK 3 ANGLE : 1.299 5888 REMARK 3 CHIRALITY : 0.078 636 REMARK 3 PLANARITY : 0.005 583 REMARK 3 DIHEDRAL : 20.120 1649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7997 -19.0093 -6.1183 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0978 REMARK 3 T33: 0.1122 T12: -0.0073 REMARK 3 T13: -0.0082 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.5012 L22: 2.2995 REMARK 3 L33: 4.8679 L12: 0.4048 REMARK 3 L13: -0.7329 L23: -3.1830 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0277 S13: -0.0846 REMARK 3 S21: 0.0837 S22: -0.1221 S23: -0.1013 REMARK 3 S31: -0.0198 S32: 0.3047 S33: 0.0869 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1604 -17.3409 8.2571 REMARK 3 T TENSOR REMARK 3 T11: 0.1521 T22: 0.1446 REMARK 3 T33: 0.1031 T12: -0.0086 REMARK 3 T13: -0.0366 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.7935 L22: 5.3532 REMARK 3 L33: 1.9549 L12: 1.4494 REMARK 3 L13: -0.0132 L23: 0.0445 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.2489 S13: 0.1022 REMARK 3 S21: 0.2429 S22: 0.0766 S23: -0.3974 REMARK 3 S31: -0.1636 S32: 0.2399 S33: -0.0078 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0968 -7.3956 0.0359 REMARK 3 T TENSOR REMARK 3 T11: 0.0775 T22: 0.1232 REMARK 3 T33: 0.0676 T12: -0.0106 REMARK 3 T13: -0.0100 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.1679 L22: 3.7530 REMARK 3 L33: 1.0828 L12: 0.1569 REMARK 3 L13: 0.3504 L23: -0.3619 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0049 S13: 0.1525 REMARK 3 S21: 0.1270 S22: -0.0865 S23: -0.1012 REMARK 3 S31: -0.1704 S32: 0.1773 S33: 0.0486 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7280 -20.9691 -3.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.1111 REMARK 3 T33: 0.0751 T12: 0.0138 REMARK 3 T13: 0.0289 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.8573 L22: 3.2071 REMARK 3 L33: 0.2618 L12: 0.6112 REMARK 3 L13: 0.4679 L23: 0.1459 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.1301 S13: -0.1137 REMARK 3 S21: -0.0017 S22: 0.0248 S23: -0.0494 REMARK 3 S31: -0.0092 S32: 0.0229 S33: -0.0336 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7258 -19.2467 3.3085 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.1192 REMARK 3 T33: 0.0559 T12: 0.0087 REMARK 3 T13: 0.0071 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.1272 L22: 6.4997 REMARK 3 L33: 3.1353 L12: 1.6403 REMARK 3 L13: 0.4499 L23: 2.8284 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: -0.1958 S13: 0.0063 REMARK 3 S21: 0.4334 S22: -0.0147 S23: -0.0125 REMARK 3 S31: 0.1379 S32: -0.1096 S33: -0.0456 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1401 -6.1885 -0.7036 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.1699 REMARK 3 T33: 0.1378 T12: 0.0620 REMARK 3 T13: -0.0385 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.7805 L22: 0.6841 REMARK 3 L33: 1.9780 L12: 0.5205 REMARK 3 L13: 0.2881 L23: -0.9300 REMARK 3 S TENSOR REMARK 3 S11: -0.1816 S12: -0.3292 S13: 0.5614 REMARK 3 S21: 0.2561 S22: 0.1188 S23: 0.0298 REMARK 3 S31: -0.1635 S32: -0.3308 S33: -0.0331 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0056 -7.4483 -9.7483 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.0811 REMARK 3 T33: 0.0779 T12: -0.0094 REMARK 3 T13: -0.0079 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.4857 L22: 1.9887 REMARK 3 L33: 1.2237 L12: -0.7609 REMARK 3 L13: -0.2254 L23: -0.8887 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.0501 S13: 0.1101 REMARK 3 S21: 0.0292 S22: 0.0506 S23: 0.0058 REMARK 3 S31: -0.0276 S32: -0.0457 S33: -0.0101 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8067 -20.4608 -7.8450 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.1063 REMARK 3 T33: 0.0768 T12: 0.0052 REMARK 3 T13: 0.0006 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.6121 L22: 6.4557 REMARK 3 L33: 2.3206 L12: 3.1052 REMARK 3 L13: -0.9805 L23: -2.2878 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: 0.0828 S13: 0.1056 REMARK 3 S21: 0.1379 S22: 0.0599 S23: 0.2331 REMARK 3 S31: -0.0436 S32: -0.0712 S33: -0.1223 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7953 -17.2142 -19.7441 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.1641 REMARK 3 T33: 0.1001 T12: -0.0001 REMARK 3 T13: -0.0228 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.2387 L22: 4.4017 REMARK 3 L33: 3.1545 L12: 2.2877 REMARK 3 L13: -1.2349 L23: -2.6035 REMARK 3 S TENSOR REMARK 3 S11: -0.1964 S12: 0.1963 S13: -0.0438 REMARK 3 S21: -0.7851 S22: 0.2043 S23: -0.1668 REMARK 3 S31: 0.4080 S32: -0.0806 S33: 0.0672 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0114 3.6249 -15.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1609 REMARK 3 T33: 0.2390 T12: 0.0224 REMARK 3 T13: -0.0387 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 3.4652 L22: 3.6634 REMARK 3 L33: 4.8144 L12: -0.0363 REMARK 3 L13: -1.2701 L23: 1.1147 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.1285 S13: 0.3645 REMARK 3 S21: -0.0436 S22: -0.0915 S23: 0.6224 REMARK 3 S31: -0.3140 S32: -0.4745 S33: 0.1054 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4965 9.1039 -8.5930 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.1086 REMARK 3 T33: 0.2109 T12: -0.0042 REMARK 3 T13: 0.0130 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 6.1241 L22: 4.8957 REMARK 3 L33: 6.1139 L12: 1.2448 REMARK 3 L13: -1.8253 L23: 0.2972 REMARK 3 S TENSOR REMARK 3 S11: 0.3340 S12: -0.4248 S13: 0.6623 REMARK 3 S21: 0.2990 S22: -0.2265 S23: 0.1822 REMARK 3 S31: -0.5291 S32: 0.0113 S33: -0.0049 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2693 -6.3962 -28.6689 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1700 REMARK 3 T33: 0.2191 T12: 0.0004 REMARK 3 T13: -0.0157 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 7.5865 L22: 1.4643 REMARK 3 L33: 3.6575 L12: -0.6747 REMARK 3 L13: -1.8229 L23: 1.2244 REMARK 3 S TENSOR REMARK 3 S11: 0.2649 S12: 0.1472 S13: 0.7044 REMARK 3 S21: -0.2525 S22: 0.0929 S23: 0.3166 REMARK 3 S31: -0.2050 S32: -0.3872 S33: -0.3515 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3681 -10.1165 -40.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.0954 T22: 0.1536 REMARK 3 T33: 0.0791 T12: 0.0070 REMARK 3 T13: 0.0226 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.0677 L22: 3.0786 REMARK 3 L33: 2.2418 L12: 0.4479 REMARK 3 L13: 0.0151 L23: -0.9207 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: -0.0610 S13: 0.0764 REMARK 3 S21: 0.1117 S22: -0.1062 S23: -0.0549 REMARK 3 S31: -0.1417 S32: 0.0779 S33: 0.0665 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1406 -6.1285 -51.5707 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1743 REMARK 3 T33: 0.0977 T12: -0.0148 REMARK 3 T13: 0.0011 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 3.0758 L22: 5.3120 REMARK 3 L33: 2.9901 L12: -1.8449 REMARK 3 L13: 0.4699 L23: -1.0148 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.1909 S13: 0.0785 REMARK 3 S21: -0.2522 S22: -0.0353 S23: 0.0845 REMARK 3 S31: -0.2018 S32: 0.1131 S33: 0.0563 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4065 -20.4985 -44.6557 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.1361 REMARK 3 T33: 0.0733 T12: 0.0018 REMARK 3 T13: 0.0079 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.1782 L22: 3.9889 REMARK 3 L33: 2.8233 L12: 0.5873 REMARK 3 L13: 0.3822 L23: -0.7635 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: 0.1553 S13: -0.0644 REMARK 3 S21: -0.2073 S22: 0.1248 S23: 0.0511 REMARK 3 S31: 0.1277 S32: -0.0195 S33: -0.0434 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7449 -10.9868 -51.5428 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.2494 REMARK 3 T33: 0.2066 T12: -0.0162 REMARK 3 T13: -0.0555 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 3.1739 L22: 5.5422 REMARK 3 L33: 1.7432 L12: 1.1781 REMARK 3 L13: -0.8698 L23: -1.3075 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.3910 S13: 0.0113 REMARK 3 S21: -0.3845 S22: 0.0926 S23: 0.5571 REMARK 3 S31: 0.0410 S32: -0.3029 S33: -0.1503 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 315 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7913 -34.5704 -46.5716 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.1276 REMARK 3 T33: 0.2586 T12: -0.0122 REMARK 3 T13: -0.0224 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.5815 L22: 6.1714 REMARK 3 L33: 6.6729 L12: 1.6677 REMARK 3 L13: -1.3693 L23: -0.9202 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.2425 S13: -0.7056 REMARK 3 S21: -0.6424 S22: 0.0227 S23: 0.1359 REMARK 3 S31: 0.7322 S32: 0.1540 S33: 0.0138 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1997 0.6564 -20.9346 REMARK 3 T TENSOR REMARK 3 T11: 0.1725 T22: 0.1398 REMARK 3 T33: 0.1540 T12: -0.0251 REMARK 3 T13: 0.0172 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.9220 L22: 3.7323 REMARK 3 L33: 3.7917 L12: -1.4508 REMARK 3 L13: 0.9954 L23: -3.0806 REMARK 3 S TENSOR REMARK 3 S11: 0.1413 S12: 0.1168 S13: 0.2845 REMARK 3 S21: 0.0436 S22: -0.2907 S23: -0.0828 REMARK 3 S31: -0.4085 S32: 0.4108 S33: 0.1742 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2384 0.5197 -22.9789 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.1567 REMARK 3 T33: 0.1965 T12: -0.0005 REMARK 3 T13: -0.0095 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 3.8470 L22: 4.3728 REMARK 3 L33: 0.2014 L12: -3.9675 REMARK 3 L13: 0.5934 L23: -0.5226 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: 0.2962 S13: -0.1814 REMARK 3 S21: -0.1099 S22: -0.1906 S23: 0.3779 REMARK 3 S31: -0.1048 S32: 0.0936 S33: 0.0615 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2158 -27.6344 -26.6459 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.1980 REMARK 3 T33: 0.2194 T12: -0.0424 REMARK 3 T13: 0.0407 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 2.4114 L22: 3.9406 REMARK 3 L33: 0.6824 L12: 2.8250 REMARK 3 L13: 0.6049 L23: 0.4945 REMARK 3 S TENSOR REMARK 3 S11: 0.3373 S12: -0.1642 S13: -0.0834 REMARK 3 S21: 0.2885 S22: -0.4933 S23: 0.2971 REMARK 3 S31: 0.1951 S32: -0.1448 S33: 0.1495 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3126 -27.1223 -26.5197 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1670 REMARK 3 T33: 0.2240 T12: -0.0225 REMARK 3 T13: 0.0027 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.4868 L22: 9.1757 REMARK 3 L33: 3.7115 L12: 0.7884 REMARK 3 L13: 0.2838 L23: 5.1029 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.1067 S13: -0.2582 REMARK 3 S21: -0.3777 S22: -0.3488 S23: 0.3137 REMARK 3 S31: -0.0953 S32: -0.3768 S33: 0.2654 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43868 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.1_1168 REMARK 200 STARTING MODEL: PDB ENTRY 4NDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM POTASSIUM ACETATE, 20% W/V REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.23400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.08650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.74550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.08650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.23400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.74550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 341 REMARK 465 GLN A 342 REMARK 465 THR B 341 REMARK 465 GLN B 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 185 -156.84 -137.95 REMARK 500 ALA A 239 17.22 -140.15 REMARK 500 HIS A 258 112.43 84.38 REMARK 500 ALA B 239 37.05 -143.09 REMARK 500 LYS B 243 -11.65 75.91 REMARK 500 MET B 256 -92.60 -116.29 REMARK 500 HIS B 258 153.29 76.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 255 OG REMARK 620 2 HOH A 554 O 86.8 REMARK 620 3 HOH A 625 O 173.2 86.7 REMARK 620 4 HOH D 211 O 101.3 171.9 85.1 REMARK 620 5 HOH D 218 O 87.8 88.5 94.2 92.2 REMARK 620 6 HOH D 242 O 95.7 107.3 84.1 71.8 164.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 319 SG REMARK 620 2 CYS A 322 SG 118.5 REMARK 620 3 HIS A 335 NE2 106.8 101.7 REMARK 620 4 HIS A 339 NE2 102.0 120.4 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 319 SG REMARK 620 2 CYS B 322 SG 117.9 REMARK 620 3 HIS B 335 NE2 102.8 107.9 REMARK 620 4 HIS B 339 NE2 100.5 119.2 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT D 8 O2 REMARK 620 2 HOH D 220 O 92.4 REMARK 620 3 HOH D 240 O 145.5 86.5 REMARK 620 4 DT E 4 O2 80.0 108.9 132.7 REMARK 620 5 DC E 5 O4' 132.1 71.7 80.0 64.4 REMARK 620 6 HOH E 142 O 95.4 169.7 83.2 79.1 107.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K G 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT G 8 O2 REMARK 620 2 DT G 9 O4' 68.2 REMARK 620 3 HOH G 213 O 115.9 69.9 REMARK 620 4 HOH G 218 O 88.6 92.5 139.2 REMARK 620 5 DT H 4 O2 82.3 137.6 98.9 117.3 REMARK 620 6 DC H 5 O4' 138.6 148.3 100.4 75.2 72.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K G 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SZQ RELATED DB: PDB REMARK 900 RELATED ID: 4NDF RELATED DB: PDB REMARK 900 RELATED ID: 4NDG RELATED DB: PDB REMARK 900 RELATED ID: 4NDH RELATED DB: PDB DBREF 4NDI A 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 DBREF 4NDI B 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 DBREF 4NDI D 1 10 PDB 4NDI 4NDI 1 10 DBREF 4NDI G 1 10 PDB 4NDI 4NDI 1 10 DBREF 4NDI E 1 10 PDB 4NDI 4NDI 1 10 DBREF 4NDI H 1 10 PDB 4NDI 4NDI 1 10 SEQADV 4NDI GLY A 161 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI SER A 162 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI HIS A 163 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI MET A 164 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI GLN A 197 UNP Q7Z2E3 LYS 211 ENGINEERED MUTATION SEQADV 4NDI GLY B 161 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI SER B 162 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI HIS B 163 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI MET B 164 UNP Q7Z2E3 EXPRESSION TAG SEQADV 4NDI GLN B 197 UNP Q7Z2E3 LYS 211 ENGINEERED MUTATION SEQRES 1 A 182 GLY SER HIS MET GLY HIS TRP SER GLN GLY LEU LYS ILE SEQRES 2 A 182 SER MET GLN ASP PRO LYS MET GLN VAL TYR LYS ASP GLU SEQRES 3 A 182 GLN VAL VAL VAL ILE LYS ASP LYS TYR PRO GLN ALA ARG SEQRES 4 A 182 TYR HIS TRP LEU VAL LEU PRO TRP THR SER ILE SER SER SEQRES 5 A 182 LEU LYS ALA VAL ALA ARG GLU HIS LEU GLU LEU LEU LYS SEQRES 6 A 182 HIS MET HIS THR VAL GLY GLU LYS VAL ILE VAL ASP PHE SEQRES 7 A 182 ALA GLY SER SER LYS LEU ARG PHE ARG LEU GLY TYR HIS SEQRES 8 A 182 ALA ILE PRO SER MET SER HIS VAL HIS LEU HIS VAL ILE SEQRES 9 A 182 SER GLN ASP PHE ASP SER PRO CYS LEU LYS ASN LYS LYS SEQRES 10 A 182 HIS TRP ASN SER PHE ASN THR GLU TYR PHE LEU GLU SER SEQRES 11 A 182 GLN ALA VAL ILE GLU MET VAL GLN GLU ALA GLY ARG VAL SEQRES 12 A 182 THR VAL ARG ASP GLY MET PRO GLU LEU LEU LYS LEU PRO SEQRES 13 A 182 LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER ILE SEQRES 14 A 182 PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP THR GLN SEQRES 1 B 182 GLY SER HIS MET GLY HIS TRP SER GLN GLY LEU LYS ILE SEQRES 2 B 182 SER MET GLN ASP PRO LYS MET GLN VAL TYR LYS ASP GLU SEQRES 3 B 182 GLN VAL VAL VAL ILE LYS ASP LYS TYR PRO GLN ALA ARG SEQRES 4 B 182 TYR HIS TRP LEU VAL LEU PRO TRP THR SER ILE SER SER SEQRES 5 B 182 LEU LYS ALA VAL ALA ARG GLU HIS LEU GLU LEU LEU LYS SEQRES 6 B 182 HIS MET HIS THR VAL GLY GLU LYS VAL ILE VAL ASP PHE SEQRES 7 B 182 ALA GLY SER SER LYS LEU ARG PHE ARG LEU GLY TYR HIS SEQRES 8 B 182 ALA ILE PRO SER MET SER HIS VAL HIS LEU HIS VAL ILE SEQRES 9 B 182 SER GLN ASP PHE ASP SER PRO CYS LEU LYS ASN LYS LYS SEQRES 10 B 182 HIS TRP ASN SER PHE ASN THR GLU TYR PHE LEU GLU SER SEQRES 11 B 182 GLN ALA VAL ILE GLU MET VAL GLN GLU ALA GLY ARG VAL SEQRES 12 B 182 THR VAL ARG ASP GLY MET PRO GLU LEU LEU LYS LEU PRO SEQRES 13 B 182 LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER ILE SEQRES 14 B 182 PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP THR GLN SEQRES 1 D 10 G DT DT DA DT DG DA DT DT DC SEQRES 1 E 10 DG DA DA DT DC DA DT DA DA DC SEQRES 1 G 10 G DT DT DA DT DG DA DT DT DC SEQRES 1 H 10 DG DA DA DT DC DA DT DA DA DC HET AMP A 401 23 HET ZN A 402 1 HET NA A 403 1 HET BME A 404 4 HET GOL A 405 6 HET AMP B 401 23 HET ZN B 402 1 HET BME B 403 4 HET K D 101 1 HET K G 101 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 AMP 2(C10 H14 N5 O7 P) FORMUL 8 ZN 2(ZN 2+) FORMUL 9 NA NA 1+ FORMUL 10 BME 2(C2 H6 O S) FORMUL 11 GOL C3 H8 O3 FORMUL 15 K 2(K 1+) FORMUL 17 HOH *698(H2 O) HELIX 1 1 HIS A 166 SER A 168 5 3 HELIX 2 2 GLN A 169 MET A 175 1 7 HELIX 3 3 SER A 212 VAL A 216 5 5 HELIX 4 4 ALA A 217 GLU A 219 5 3 HELIX 5 5 HIS A 220 GLY A 240 1 21 HELIX 6 6 ASN A 275 THR A 284 1 10 HELIX 7 7 SER A 290 GLY A 301 1 12 HELIX 8 8 GLY A 308 LEU A 313 1 6 HELIX 9 9 SER A 328 ARG A 337 1 10 HELIX 10 10 LYS A 338 TRP A 340 5 3 HELIX 11 11 GLY B 165 SER B 168 5 4 HELIX 12 12 GLN B 169 GLN B 176 1 8 HELIX 13 13 SER B 212 VAL B 216 5 5 HELIX 14 14 ALA B 217 GLU B 219 5 3 HELIX 15 15 HIS B 220 GLY B 240 1 21 HELIX 16 16 ASN B 275 THR B 284 1 10 HELIX 17 17 SER B 290 GLY B 301 1 12 HELIX 18 18 GLY B 308 LEU B 313 1 6 HELIX 19 19 SER B 328 ARG B 337 1 10 HELIX 20 20 LYS B 338 TRP B 340 5 3 SHEET 1 A 6 GLN A 181 LYS A 184 0 SHEET 2 A 6 VAL A 188 LYS A 192 -1 O VAL A 190 N VAL A 182 SHEET 3 A 6 HIS A 201 PRO A 206 -1 O LEU A 205 N VAL A 189 SHEET 4 A 6 LEU A 261 SER A 265 -1 O VAL A 263 N TRP A 202 SHEET 5 A 6 PHE A 246 HIS A 251 -1 N GLY A 249 O HIS A 262 SHEET 6 A 6 PHE A 287 GLU A 289 -1 O LEU A 288 N TYR A 250 SHEET 1 B 6 TYR B 183 LYS B 184 0 SHEET 2 B 6 VAL B 188 LYS B 192 -1 O VAL B 190 N TYR B 183 SHEET 3 B 6 HIS B 201 PRO B 206 -1 O LEU B 205 N VAL B 189 SHEET 4 B 6 LEU B 261 SER B 265 -1 O LEU B 261 N VAL B 204 SHEET 5 B 6 PHE B 246 HIS B 251 -1 N GLY B 249 O HIS B 262 SHEET 6 B 6 PHE B 287 GLU B 289 -1 O LEU B 288 N TYR B 250 SHEET 1 C 2 LEU B 317 ARG B 318 0 SHEET 2 C 2 LEU B 325 LEU B 326 -1 O LEU B 326 N LEU B 317 LINK OG SER A 255 NA NA A 403 1555 1555 2.35 LINK SG CYS A 319 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 322 ZN ZN A 402 1555 1555 2.26 LINK NE2 HIS A 335 ZN ZN A 402 1555 1555 2.04 LINK NE2 HIS A 339 ZN ZN A 402 1555 1555 2.03 LINK NA NA A 403 O HOH A 554 1555 1555 2.45 LINK NA NA A 403 O HOH A 625 1555 1555 2.41 LINK NA NA A 403 O HOH D 211 1555 1555 2.37 LINK NA NA A 403 O HOH D 218 1555 1555 2.55 LINK NA NA A 403 O HOH D 242 1555 1555 2.34 LINK SG CYS B 319 ZN ZN B 402 1555 1555 2.38 LINK SG CYS B 322 ZN ZN B 402 1555 1555 2.32 LINK NE2 HIS B 335 ZN ZN B 402 1555 1555 2.05 LINK NE2 HIS B 339 ZN ZN B 402 1555 1555 2.01 LINK O2 DT D 8 K K D 101 1555 1555 2.67 LINK K K D 101 O HOH D 220 1555 1555 2.71 LINK K K D 101 O HOH D 240 1555 1555 2.71 LINK K K D 101 O2 DT E 4 1555 1555 2.65 LINK K K D 101 O4' DC E 5 1555 1555 3.31 LINK K K D 101 O HOH E 142 1555 1555 2.75 LINK O2 DT G 8 K K G 101 1555 1555 2.75 LINK O4' DT G 9 K K G 101 1555 1555 3.09 LINK K K G 101 O HOH G 213 1555 1555 2.97 LINK K K G 101 O HOH G 218 1555 1555 2.89 LINK K K G 101 O2 DT H 4 1555 1555 2.66 LINK K K G 101 O4' DC H 5 1555 1555 3.04 SITE 1 AC1 20 GLY A 170 LEU A 171 SER A 174 MET A 180 SITE 2 AC1 20 ASP A 193 LYS A 194 TYR A 195 HIS A 251 SITE 3 AC1 20 PRO A 254 SER A 255 MET A 256 HIS A 260 SITE 4 AC1 20 HIS A 262 HOH A 573 HOH A 577 HOH A 661 SITE 5 AC1 20 HOH A 665 HOH A 710 G D 1 HOH D 229 SITE 1 AC2 4 CYS A 319 CYS A 322 HIS A 335 HIS A 339 SITE 1 AC3 6 SER A 255 HOH A 554 HOH A 625 HOH D 211 SITE 2 AC3 6 HOH D 218 HOH D 242 SITE 1 AC4 6 TYR A 195 CYS A 272 LYS A 274 HOH A 519 SITE 2 AC4 6 GLN B 298 DT D 3 SITE 1 AC5 3 SER A 211 SER A 257 HOH A 532 SITE 1 AC6 21 LEU B 171 SER B 174 ILE B 191 LYS B 192 SITE 2 AC6 21 ASP B 193 LYS B 194 TYR B 195 LEU B 203 SITE 3 AC6 21 HIS B 251 SER B 255 MET B 256 HIS B 260 SITE 4 AC6 21 HIS B 262 HOH B 507 HOH B 524 HOH B 531 SITE 5 AC6 21 HOH B 559 HOH B 616 HOH B 617 HOH B 618 SITE 6 AC6 21 G G 1 SITE 1 AC7 4 CYS B 319 CYS B 322 HIS B 335 HIS B 339 SITE 1 AC8 5 TYR B 195 CYS B 272 LYS B 274 DT G 3 SITE 2 AC8 5 HOH G 203 SITE 1 AC9 7 DT D 8 DT D 9 HOH D 220 HOH D 240 SITE 2 AC9 7 DT E 4 DC E 5 HOH E 142 SITE 1 BC1 6 DT G 8 DT G 9 HOH G 213 HOH G 218 SITE 2 BC1 6 DT H 4 DC H 5 CRYST1 40.468 115.491 116.173 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008608 0.00000