PDB Short entry for 4NIE HEADER TRANSCRIPTION/AGONIST 06-NOV-13 4NIE TITLE CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR ROR(GAMMA)T LIGAND- TITLE 2 BINDING DOMAIN IN COMPLEX WITH SMALL MOLECULE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 263-509; COMPND 5 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 6 GROUP F MEMBER 3, RETINOID-RELATED ORPHAN RECEPTOR-GAMMA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE FROM NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: UNP RESIDUES 684-697; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1F3, RORC, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, TRANSCRIPTION-AGONIST KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.MA,L.Q.YANG REVDAT 4 20-MAR-24 4NIE 1 REMARK REVDAT 3 25-DEC-19 4NIE 1 JRNL SEQADV REVDAT 2 04-OCT-17 4NIE 1 REMARK REVDAT 1 11-DEC-13 4NIE 0 JRNL AUTH T.YANG,Q.LIU,Y.CHENG,W.CAI,Y.MA,L.YANG,Q.WU, JRNL AUTH 2 L.A.ORBAND-MILLER,L.ZHOU,Z.XIANG,M.HUXDORF,W.ZHANG,J.ZHANG, JRNL AUTH 3 J.N.XIANG,S.LEUNG,Y.QIU,Z.ZHONG,J.D.ELLIOTT,X.LIN,Y.WANG JRNL TITL DISCOVERY OF TERTIARY AMINE AND INDOLE DERIVATIVES AS POTENT JRNL TITL 2 ROR GAMMA T INVERSE AGONISTS. JRNL REF ACS MED.CHEM.LETT. V. 5 65 2014 JRNL REFN ISSN 1948-5875 JRNL PMID 24900774 JRNL DOI 10.1021/ML4003875 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.028 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4350 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4170 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5880 ; 0.996 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9543 ; 1.139 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 4.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;32.555 ;23.284 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 758 ;11.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.070 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4863 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1096 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2058 ; 0.220 ; 0.317 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2057 ; 0.220 ; 0.317 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2574 ; 0.384 ; 0.473 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2575 ; 0.384 ; 0.473 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2292 ; 0.411 ; 0.517 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2293 ; 0.411 ; 0.519 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3304 ; 0.646 ; 0.744 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5125 ; 6.028 ; 3.639 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5126 ; 6.027 ; 3.648 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 508 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6070 -13.9560 -8.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.1990 T22: 0.2215 REMARK 3 T33: 0.1570 T12: 0.0151 REMARK 3 T13: 0.0056 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.0442 L22: 1.9769 REMARK 3 L33: 1.1916 L12: 0.1544 REMARK 3 L13: 0.1721 L23: -0.3334 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: 0.0307 S13: -0.0417 REMARK 3 S21: 0.0835 S22: 0.0432 S23: -0.0572 REMARK 3 S31: -0.0313 S32: 0.0351 S33: 0.0178 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 264 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6630 20.4320 -17.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.2554 T22: 0.2490 REMARK 3 T33: 0.1801 T12: 0.0086 REMARK 3 T13: -0.0179 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.1288 L22: 5.5472 REMARK 3 L33: 0.9838 L12: 1.1689 REMARK 3 L13: 0.2709 L23: 1.0991 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: 0.0640 S13: 0.1649 REMARK 3 S21: -0.0086 S22: 0.1831 S23: 0.0940 REMARK 3 S31: -0.1807 S32: 0.0369 S33: -0.0628 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 687 C 695 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0920 15.4620 -4.2500 REMARK 3 T TENSOR REMARK 3 T11: 0.3086 T22: 0.1630 REMARK 3 T33: 1.1913 T12: 0.0142 REMARK 3 T13: 0.3292 T23: -0.2972 REMARK 3 L TENSOR REMARK 3 L11: 42.3928 L22: 26.9538 REMARK 3 L33: 23.4563 L12: 29.9766 REMARK 3 L13: 6.1351 L23: 3.6064 REMARK 3 S TENSOR REMARK 3 S11: -0.1619 S12: -0.4776 S13: -0.4555 REMARK 3 S21: 0.6522 S22: -1.0840 S23: 2.1097 REMARK 3 S31: -1.1881 S32: -0.4443 S33: 1.2459 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 687 D 696 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2100 -8.8190 -12.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2945 REMARK 3 T33: 0.4374 T12: -0.0022 REMARK 3 T13: 0.0068 T23: 0.1085 REMARK 3 L TENSOR REMARK 3 L11: 16.3692 L22: 14.7603 REMARK 3 L33: 31.0264 L12: -2.7946 REMARK 3 L13: -2.4405 L23: 5.7758 REMARK 3 S TENSOR REMARK 3 S11: 0.2980 S12: 0.3381 S13: 0.6264 REMARK 3 S21: 0.0641 S22: -0.2098 S23: 0.6682 REMARK 3 S31: -0.3792 S32: -1.0745 S33: -0.0882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER AXIOM 200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 91.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 PH 6.5, 14% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.54250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.99000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.17450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.99000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.54250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.17450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 248 REMARK 465 LYS A 249 REMARK 465 LYS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 LEU A 257 REMARK 465 VAL A 258 REMARK 465 PRO A 259 REMARK 465 ARG A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 PRO A 263 REMARK 465 GLU A 509 REMARK 465 MET B 248 REMARK 465 LYS B 249 REMARK 465 LYS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 LEU B 257 REMARK 465 VAL B 258 REMARK 465 PRO B 259 REMARK 465 ARG B 260 REMARK 465 GLY B 261 REMARK 465 SER B 262 REMARK 465 PRO B 263 REMARK 465 GLU B 509 REMARK 465 LYS C 686 REMARK 465 ASP C 696 REMARK 465 SER C 697 REMARK 465 LYS D 686 REMARK 465 SER D 697 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 288 CD NE CZ NH1 NH2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ARG A 294 CD NE CZ NH1 NH2 REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 GLN A 346 CD OE1 NE2 REMARK 470 ARG A 437 NE CZ NH1 NH2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 LYS B 279 CD CE NZ REMARK 470 ARG B 288 CD NE CZ NH1 NH2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 346 CG CD OE1 NE2 REMARK 470 ARG B 437 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 456 CD CE NZ REMARK 470 LYS B 469 CG CD CE NZ REMARK 470 LYS B 503 CD CE NZ REMARK 470 LYS C 688 CE NZ REMARK 470 GLN C 695 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 286 -74.17 85.74 REMARK 500 CYS A 393 56.64 -145.08 REMARK 500 GLN B 286 -77.72 73.41 REMARK 500 GLU B 435 62.42 -101.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DMX A 602 REMARK 610 DMX B 602 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBH A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMX A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBH B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMX B 602 DBREF 4NIE A 263 509 UNP P51449 RORG_HUMAN 263 509 DBREF 4NIE B 263 509 UNP P51449 RORG_HUMAN 263 509 DBREF 4NIE C 686 697 UNP E7EWM1 E7EWM1_HUMAN 686 697 DBREF 4NIE D 686 697 UNP E7EWM1 E7EWM1_HUMAN 686 697 SEQADV 4NIE MET A 248 UNP P51449 EXPRESSION TAG SEQADV 4NIE LYS A 249 UNP P51449 EXPRESSION TAG SEQADV 4NIE LYS A 250 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS A 251 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS A 252 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS A 253 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS A 254 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS A 255 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS A 256 UNP P51449 EXPRESSION TAG SEQADV 4NIE LEU A 257 UNP P51449 EXPRESSION TAG SEQADV 4NIE VAL A 258 UNP P51449 EXPRESSION TAG SEQADV 4NIE PRO A 259 UNP P51449 EXPRESSION TAG SEQADV 4NIE ARG A 260 UNP P51449 EXPRESSION TAG SEQADV 4NIE GLY A 261 UNP P51449 EXPRESSION TAG SEQADV 4NIE SER A 262 UNP P51449 EXPRESSION TAG SEQADV 4NIE MET B 248 UNP P51449 EXPRESSION TAG SEQADV 4NIE LYS B 249 UNP P51449 EXPRESSION TAG SEQADV 4NIE LYS B 250 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS B 251 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS B 252 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS B 253 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS B 254 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS B 255 UNP P51449 EXPRESSION TAG SEQADV 4NIE HIS B 256 UNP P51449 EXPRESSION TAG SEQADV 4NIE LEU B 257 UNP P51449 EXPRESSION TAG SEQADV 4NIE VAL B 258 UNP P51449 EXPRESSION TAG SEQADV 4NIE PRO B 259 UNP P51449 EXPRESSION TAG SEQADV 4NIE ARG B 260 UNP P51449 EXPRESSION TAG SEQADV 4NIE GLY B 261 UNP P51449 EXPRESSION TAG SEQADV 4NIE SER B 262 UNP P51449 EXPRESSION TAG SEQRES 1 A 262 MET LYS LYS HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG SEQRES 2 A 262 GLY SER PRO TYR ALA SER LEU THR GLU ILE GLU HIS LEU SEQRES 3 A 262 VAL GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN SEQRES 4 A 262 LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE SEQRES 5 A 262 PHE SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER SEQRES 6 A 262 MET TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR SEQRES 7 A 262 GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SEQRES 8 A 262 SER GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL SEQRES 9 A 262 LEU LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG SEQRES 10 A 262 MET CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE SEQRES 11 A 262 PHE GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA SEQRES 12 A 262 LEU GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SEQRES 13 A 262 SER HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU SEQRES 14 A 262 ILE ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS SEQRES 15 A 262 ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU SEQRES 16 A 262 GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU CYS SEQRES 17 A 262 LYS THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO SEQRES 18 A 262 LYS GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU SEQRES 19 A 262 ARG LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL VAL SEQRES 20 A 262 GLN ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SER SEQRES 21 A 262 THR GLU SEQRES 1 B 262 MET LYS LYS HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG SEQRES 2 B 262 GLY SER PRO TYR ALA SER LEU THR GLU ILE GLU HIS LEU SEQRES 3 B 262 VAL GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN SEQRES 4 B 262 LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE SEQRES 5 B 262 PHE SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER SEQRES 6 B 262 MET TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR SEQRES 7 B 262 GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SEQRES 8 B 262 SER GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL SEQRES 9 B 262 LEU LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG SEQRES 10 B 262 MET CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE SEQRES 11 B 262 PHE GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA SEQRES 12 B 262 LEU GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SEQRES 13 B 262 SER HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU SEQRES 14 B 262 ILE ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS SEQRES 15 B 262 ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU SEQRES 16 B 262 GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU CYS SEQRES 17 B 262 LYS THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO SEQRES 18 B 262 LYS GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU SEQRES 19 B 262 ARG LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL VAL SEQRES 20 B 262 GLN ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SER SEQRES 21 B 262 THR GLU SEQRES 1 C 12 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SEQRES 1 D 12 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER HET NBH A 601 33 HET DMX A 602 16 HET NBH B 601 33 HET DMX B 602 16 HETNAM NBH N-(4-{[BENZYL(PROPYL)AMINO]METHYL}PHENYL)-2-[4- HETNAM 2 NBH (ETHYLSULFONYL)PHENYL]ACETAMIDE HETNAM DMX 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE FORMUL 5 NBH 2(C27 H32 N2 O3 S) FORMUL 6 DMX 2(C12 H19 N O3 S) FORMUL 9 HOH *189(H2 O) HELIX 1 1 SER A 266 GLU A 283 1 18 HELIX 2 2 ARG A 288 GLN A 295 1 8 HELIX 3 3 ARG A 296 ASN A 298 5 3 HELIX 4 4 SER A 301 LYS A 311 1 11 HELIX 5 5 SER A 312 LEU A 338 1 27 HELIX 6 6 CYS A 345 MET A 365 1 21 HELIX 7 7 GLY A 384 GLY A 392 5 9 HELIX 8 8 CYS A 393 ALA A 409 1 17 HELIX 9 9 SER A 413 ILE A 426 1 14 HELIX 10 10 GLU A 435 THR A 457 1 23 HELIX 11 11 ARG A 459 LEU A 466 5 8 HELIX 12 12 GLY A 470 HIS A 490 1 21 HELIX 13 13 HIS A 490 PHE A 498 1 9 HELIX 14 14 PRO A 499 SER A 507 1 9 HELIX 15 15 SER B 266 THR B 284 1 19 HELIX 16 16 ARG B 288 GLN B 295 1 8 HELIX 17 17 ARG B 296 ASN B 298 5 3 HELIX 18 18 SER B 301 LYS B 311 1 11 HELIX 19 19 SER B 312 LEU B 338 1 27 HELIX 20 20 CYS B 345 MET B 365 1 21 HELIX 21 21 GLY B 384 GLY B 392 5 9 HELIX 22 22 CYS B 393 ALA B 409 1 17 HELIX 23 23 SER B 413 ILE B 426 1 14 HELIX 24 24 GLU B 435 THR B 457 1 23 HELIX 25 25 ARG B 459 LEU B 466 5 8 HELIX 26 26 GLY B 470 HIS B 490 1 21 HELIX 27 27 HIS B 490 PHE B 498 1 9 HELIX 28 28 PRO B 499 SER B 507 1 9 HELIX 29 29 LYS C 688 GLN C 695 1 8 HELIX 30 30 LYS D 688 GLN D 695 1 8 SHEET 1 A 3 TYR A 369 ASN A 370 0 SHEET 2 A 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370 SHEET 3 A 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378 SHEET 1 B 3 TYR B 369 ASN B 370 0 SHEET 2 B 3 THR B 375 PHE B 378 -1 O THR B 375 N ASN B 370 SHEET 3 B 3 LYS B 381 GLY B 383 -1 O LYS B 381 N PHE B 378 SITE 1 AC1 14 CYS A 285 GLN A 286 LEU A 287 TRP A 317 SITE 2 AC1 14 CYS A 320 HIS A 323 ARG A 364 MET A 365 SITE 3 AC1 14 ARG A 367 ALA A 368 PHE A 377 PHE A 378 SITE 4 AC1 14 TYR A 502 HOH A 735 SITE 1 AC2 6 TRP A 314 HIS A 490 PRO A 491 ILE A 492 SITE 2 AC2 6 VAL A 493 GLU B 333 SITE 1 AC3 17 CYS B 285 GLN B 286 LEU B 287 TRP B 317 SITE 2 AC3 17 CYS B 320 HIS B 323 LEU B 324 ARG B 364 SITE 3 AC3 17 MET B 365 ARG B 367 ALA B 368 PHE B 377 SITE 4 AC3 17 PHE B 378 PHE B 388 ILE B 400 TYR B 502 SITE 5 AC3 17 HOH B 720 SITE 1 AC4 7 GLU A 333 TRP B 314 LEU B 489 HIS B 490 SITE 2 AC4 7 PRO B 491 ILE B 492 VAL B 493 CRYST1 67.085 86.349 91.980 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010872 0.00000