PDB Short entry for 4NL4 HEADER DNA BINDING PROTEIN 13-NOV-13 4NL4 TITLE PRIA HELICASE BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIMOSOME ASSEMBLY PROTEIN PRIA; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 272620; SOURCE 4 STRAIN: MGH 78578; SOURCE 5 GENE: KPN78578_41850, KPN_04230, PRIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RECA, PRIA, WINGED-HELIX, HELICASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.BHATTACHARYYA,N.P.GEORGE,J.L.KECK REVDAT 4 28-FEB-24 4NL4 1 REMARK SEQADV LINK REVDAT 3 27-MAY-15 4NL4 1 REMARK REVDAT 2 12-FEB-14 4NL4 1 JRNL REVDAT 1 08-JAN-14 4NL4 0 JRNL AUTH B.BHATTACHARYYA,N.P.GEORGE,T.M.THURMES,R.ZHOU,N.JANI, JRNL AUTH 2 S.R.WESSEL,S.J.SANDLER,T.HA,J.L.KECK JRNL TITL STRUCTURAL MECHANISMS OF PRIA-MEDIATED DNA REPLICATION JRNL TITL 2 RESTART. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 1373 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24379377 JRNL DOI 10.1073/PNAS.1318001111 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1860 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5485 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.789 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.056 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5659 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7700 ; 0.996 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 4.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;34.282 ;23.206 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 919 ;15.733 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;14.014 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 856 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4316 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 105 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0031 -42.1928 -12.0412 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.1234 REMARK 3 T33: 0.2363 T12: 0.1516 REMARK 3 T13: 0.0960 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 2.9324 L22: 2.7306 REMARK 3 L33: 3.1979 L12: -1.5867 REMARK 3 L13: -1.0149 L23: 1.2572 REMARK 3 S TENSOR REMARK 3 S11: -0.2841 S12: -0.2418 S13: -0.5404 REMARK 3 S21: 0.2867 S22: 0.0988 S23: 0.0798 REMARK 3 S31: 0.6095 S32: 0.2580 S33: 0.1853 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 106 H 197 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6483 -16.9726 -43.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.5085 T22: 0.3676 REMARK 3 T33: 0.2579 T12: 0.1867 REMARK 3 T13: 0.0593 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.5095 L22: 3.2638 REMARK 3 L33: 2.4584 L12: -0.1959 REMARK 3 L13: 0.3019 L23: 0.3162 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.6216 S13: 0.1770 REMARK 3 S21: -1.0990 S22: -0.2223 S23: -0.0660 REMARK 3 S31: -0.1402 S32: 0.1832 S33: 0.1568 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 198 H 371 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7844 -14.3447 -8.2918 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.1339 REMARK 3 T33: 0.1209 T12: 0.0289 REMARK 3 T13: -0.0347 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 2.0437 L22: 2.1705 REMARK 3 L33: 1.5313 L12: -0.3036 REMARK 3 L13: -0.7726 L23: 0.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.2043 S13: 0.1295 REMARK 3 S21: 0.0656 S22: -0.0359 S23: 0.1111 REMARK 3 S31: 0.0065 S32: 0.1337 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 372 H 430 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8543 -6.6255 -6.6034 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.2144 REMARK 3 T33: 0.2503 T12: 0.0378 REMARK 3 T13: 0.0050 T23: 0.1031 REMARK 3 L TENSOR REMARK 3 L11: 2.6739 L22: 0.6673 REMARK 3 L33: 2.2217 L12: 0.3796 REMARK 3 L13: -0.1894 L23: -0.3494 REMARK 3 S TENSOR REMARK 3 S11: -0.1619 S12: 0.2968 S13: 0.5400 REMARK 3 S21: -0.0523 S22: 0.3423 S23: 0.1785 REMARK 3 S31: -0.3365 S32: -0.3877 S33: -0.1804 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 431 H 487 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2964 -28.4816 5.7439 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.1770 REMARK 3 T33: 0.2895 T12: -0.0279 REMARK 3 T13: 0.1444 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 9.5615 L22: 7.1123 REMARK 3 L33: 4.7746 L12: 0.1756 REMARK 3 L13: -1.8437 L23: -1.2381 REMARK 3 S TENSOR REMARK 3 S11: -0.4332 S12: 0.6445 S13: -1.3123 REMARK 3 S21: -0.1798 S22: -0.1838 S23: -0.2809 REMARK 3 S31: 0.6218 S32: -0.0491 S33: 0.6170 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 630 H 720 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1394 REMARK 3 T33: 0.1394 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4NL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26617 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL, PH 8.0, 5% MPD, 6% PEG REMARK 280 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.45467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.22733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS H -15 REMARK 465 HIS H -14 REMARK 465 HIS H -13 REMARK 465 HIS H -12 REMARK 465 HIS H -11 REMARK 465 HIS H -10 REMARK 465 SER H -9 REMARK 465 SER H -8 REMARK 465 GLY H -7 REMARK 465 LEU H -6 REMARK 465 VAL H -5 REMARK 465 PRO H -4 REMARK 465 ARG H -3 REMARK 465 GLY H -2 REMARK 465 SER H -1 REMARK 465 HIS H 0 REMARK 465 MET H 1 REMARK 465 PRO H 180 REMARK 465 ALA H 181 REMARK 465 LEU H 182 REMARK 465 ARG H 379 REMARK 465 ALA H 380 REMARK 465 GLY H 381 REMARK 465 ASN H 382 REMARK 465 ALA H 383 REMARK 465 ARG H 384 REMARK 465 ASP H 512 REMARK 465 THR H 513 REMARK 465 THR H 514 REMARK 465 SER H 515 REMARK 465 ARG H 516 REMARK 465 LYS H 517 REMARK 465 GLY H 518 REMARK 465 ALA H 519 REMARK 465 LEU H 520 REMARK 465 GLU H 521 REMARK 465 GLU H 522 REMARK 465 ALA H 679 REMARK 465 PRO H 680 REMARK 465 LYS H 681 REMARK 465 ARG H 682 REMARK 465 GLY H 683 REMARK 465 GLY H 684 REMARK 465 ARG H 685 REMARK 465 TRP H 686 REMARK 465 ARG H 718 REMARK 465 LYS H 719 REMARK 465 VAL H 720 REMARK 465 LYS H 721 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN H 644 N GLN H 646 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO H 11 27.51 -72.91 REMARK 500 VAL H 26 116.29 -161.35 REMARK 500 LEU H 128 38.75 -73.69 REMARK 500 LYS H 132 15.99 -67.27 REMARK 500 ARG H 133 14.83 -147.43 REMARK 500 ARG H 135 -70.41 83.32 REMARK 500 VAL H 191 10.20 -64.94 REMARK 500 ALA H 192 166.32 65.04 REMARK 500 THR H 302 -162.78 -109.73 REMARK 500 ASP H 312 81.14 -152.36 REMARK 500 ARG H 426 -137.35 44.24 REMARK 500 ASP H 448 92.12 -64.86 REMARK 500 CYS H 465 -167.46 -122.56 REMARK 500 GLU H 491 42.48 -75.74 REMARK 500 GLN H 492 73.32 36.68 REMARK 500 LEU H 524 42.15 -93.88 REMARK 500 ALA H 587 -50.79 64.30 REMARK 500 ASN H 645 -32.36 50.30 REMARK 500 GLN H 646 -163.20 -117.51 REMARK 500 GLN H 647 -42.94 57.54 REMARK 500 LEU H 664 81.95 100.11 REMARK 500 ASP H 666 8.51 49.89 REMARK 500 GLU H 730 -52.74 67.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 435 SG REMARK 620 2 CYS H 438 SG 107.8 REMARK 620 3 CYS H 475 SG 105.2 104.7 REMARK 620 4 CYS H 478 SG 108.8 110.8 118.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 444 SG REMARK 620 2 CYS H 447 SG 120.6 REMARK 620 3 CYS H 462 SG 107.3 98.7 REMARK 620 4 CYS H 465 SG 105.7 122.6 97.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP H 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D7G RELATED DB: PDB REMARK 900 RELATED ID: 2D7H RELATED DB: PDB REMARK 900 RELATED ID: 2DWL RELATED DB: PDB REMARK 900 RELATED ID: 2DWM RELATED DB: PDB REMARK 900 RELATED ID: 2DWN RELATED DB: PDB REMARK 900 RELATED ID: 2D7E RELATED DB: PDB REMARK 900 RELATED ID: 4NL8 RELATED DB: PDB DBREF 4NL4 H 1 731 UNP A6TGC5 A6TGC5_KLEP7 1 731 SEQADV 4NL4 HIS H -15 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 HIS H -14 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 HIS H -13 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 HIS H -12 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 HIS H -11 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 HIS H -10 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 SER H -9 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 SER H -8 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 GLY H -7 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 LEU H -6 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 VAL H -5 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 PRO H -4 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 ARG H -3 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 GLY H -2 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 SER H -1 UNP A6TGC5 EXPRESSION TAG SEQADV 4NL4 HIS H 0 UNP A6TGC5 EXPRESSION TAG SEQRES 1 H 747 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 H 747 GLY SER HIS MET SER VAL ALA HIS VAL ALA LEU PRO VAL SEQRES 3 H 747 PRO LEU PRO ARG THR PHE ASP TYR LEU LEU PRO GLU GLY SEQRES 4 H 747 MET ALA VAL LYS ALA GLY CYS ARG VAL ARG VAL PRO PHE SEQRES 5 H 747 GLY LYS GLN GLU ARG ILE GLY ILE VAL ALA ALA VAL SER SEQRES 6 H 747 GLU ARG SER GLU LEU PRO LEU ASP GLU LEU LYS PRO VAL SEQRES 7 H 747 ALA GLU ALA LEU ASP ASP GLU PRO VAL PHE SER THR THR SEQRES 8 H 747 VAL TRP ARG LEU LEU MET TRP ALA ALA GLU TYR TYR HIS SEQRES 9 H 747 HIS PRO ILE GLY ASP VAL LEU PHE HIS ALA LEU PRO VAL SEQRES 10 H 747 MET LEU ARG GLN GLY LYS PRO ALA SER ALA THR PRO LEU SEQRES 11 H 747 TRP TYR TRP PHE ALA THR GLU GLN GLY GLN VAL VAL ASP SEQRES 12 H 747 LEU ASN GLY LEU LYS ARG SER ARG LYS GLN GLN GLN ALA SEQRES 13 H 747 LEU ALA ALA LEU ARG GLN GLY LYS ILE TRP ARG HIS GLN SEQRES 14 H 747 VAL GLY GLU LEU GLU PHE ASN GLU ALA ALA LEU GLN ALA SEQRES 15 H 747 LEU ARG GLY LYS GLY LEU ALA GLU LEU ALA CYS GLU ALA SEQRES 16 H 747 PRO ALA LEU THR ASP TRP ARG SER ALA TYR SER VAL ALA SEQRES 17 H 747 GLY GLU ARG LEU ARG LEU ASN THR GLU GLN ALA THR ALA SEQRES 18 H 747 VAL GLY ALA ILE HIS SER ALA ALA ASP ARG PHE SER ALA SEQRES 19 H 747 TRP LEU LEU ALA GLY ILE THR GLY SER GLY LYS THR GLU SEQRES 20 H 747 VAL TYR LEU SER VAL LEU GLU ASN VAL LEU ALA GLN GLY SEQRES 21 H 747 ARG GLN ALA LEU VAL MET VAL PRO GLU ILE GLY LEU THR SEQRES 22 H 747 PRO GLN THR ILE ALA ARG PHE ARG GLN ARG PHE ASN ALA SEQRES 23 H 747 PRO VAL GLU VAL LEU HIS SER GLY LEU ASN ASP SER GLU SEQRES 24 H 747 ARG LEU SER ALA TRP LEU LYS ALA LYS ASN GLY GLU ALA SEQRES 25 H 747 ALA ILE VAL ILE GLY THR ARG SER SER LEU PHE THR PRO SEQRES 26 H 747 PHE LYS ASP LEU GLY VAL ILE VAL ILE ASP GLU GLU HIS SEQRES 27 H 747 ASP SER SER TYR LYS GLN GLN GLU GLY TRP ARG TYR HIS SEQRES 28 H 747 ALA ARG ASP LEU ALA VAL TRP ARG ALA HIS SER GLU GLN SEQRES 29 H 747 ILE PRO ILE ILE LEU GLY SER ALA THR PRO ALA LEU GLU SEQRES 30 H 747 THR LEU HIS ASN VAL ARG GLN GLY LYS TYR ARG GLN LEU SEQRES 31 H 747 THR LEU SER LYS ARG ALA GLY ASN ALA ARG PRO ALA GLN SEQRES 32 H 747 GLN HIS VAL LEU ASP LEU LYS GLY GLN PRO LEU GLN ALA SEQRES 33 H 747 GLY LEU SER PRO ALA LEU ILE SER ARG MET ARG GLN HIS SEQRES 34 H 747 LEU GLN ALA ASP ASN GLN VAL ILE LEU PHE LEU ASN ARG SEQRES 35 H 747 ARG GLY PHE ALA PRO ALA LEU LEU CYS HIS ASP CYS GLY SEQRES 36 H 747 TRP ILE ALA GLU CYS PRO ARG CYS ASP SER TYR TYR THR SEQRES 37 H 747 LEU HIS GLN ALA GLN HIS HIS LEU ARG CYS HIS HIS CYS SEQRES 38 H 747 ASP SER GLN ARG PRO ILE PRO ARG GLN CYS PRO SER CYS SEQRES 39 H 747 GLY SER THR HIS LEU VAL PRO VAL GLY ILE GLY THR GLU SEQRES 40 H 747 GLN LEU GLU GLN ALA LEU ALA PRO LEU PHE PRO GLU VAL SEQRES 41 H 747 PRO ILE SER ARG ILE ASP ARG ASP THR THR SER ARG LYS SEQRES 42 H 747 GLY ALA LEU GLU GLU HIS LEU ALA ALA VAL HIS ARG GLY SEQRES 43 H 747 GLY ALA ARG ILE LEU ILE GLY THR GLN MET LEU ALA LYS SEQRES 44 H 747 GLY HIS HIS PHE PRO ASP VAL THR LEU VAL SER LEU LEU SEQRES 45 H 747 ASP VAL ASP GLY ALA LEU PHE SER ALA ASP PHE ARG SER SEQRES 46 H 747 ALA GLU ARG PHE ALA GLN LEU TYR THR GLN VAL SER GLY SEQRES 47 H 747 ARG ALA GLY ARG ALA GLY LYS GLN GLY GLU VAL ILE LEU SEQRES 48 H 747 GLN THR HIS HIS PRO GLU HIS PRO LEU LEU GLN THR LEU SEQRES 49 H 747 LEU TYR LYS GLY TYR ASP ALA PHE ALA GLU GLN ALA LEU SEQRES 50 H 747 ALA GLU ARG GLN THR MET GLN LEU PRO PRO TRP THR SER SEQRES 51 H 747 HIS VAL LEU ILE ARG ALA GLU ASP HIS ASN ASN GLN GLN SEQRES 52 H 747 ALA PRO LEU PHE LEU GLN GLN LEU ARG ASN LEU LEU GLN SEQRES 53 H 747 ALA SER PRO LEU ALA ASP GLU LYS LEU TRP VAL LEU GLY SEQRES 54 H 747 PRO VAL PRO ALA LEU ALA PRO LYS ARG GLY GLY ARG TRP SEQRES 55 H 747 ARG TRP GLN ILE LEU LEU GLN HIS PRO SER ARG VAL ARG SEQRES 56 H 747 LEU GLN HIS ILE VAL SER GLY THR LEU ALA LEU ILE ASN SEQRES 57 H 747 THR LEU PRO GLU ALA ARG LYS VAL LYS TRP VAL LEU ASP SEQRES 58 H 747 VAL ASP PRO ILE GLU GLY HET ADP H 801 27 HET ZN H 802 1 HET ZN H 803 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *28(H2 O) HELIX 1 1 PRO H 55 LEU H 59 5 5 HELIX 2 2 SER H 73 HIS H 88 1 16 HELIX 3 3 PRO H 90 ALA H 98 1 9 HELIX 4 4 PRO H 100 GLN H 105 1 6 HELIX 5 5 GLY H 130 SER H 134 5 5 HELIX 6 6 LYS H 136 GLY H 147 1 12 HELIX 7 7 HIS H 152 LEU H 157 5 6 HELIX 8 8 ASN H 160 LYS H 170 1 11 HELIX 9 9 ASN H 199 SER H 211 1 13 HELIX 10 10 GLY H 228 GLN H 243 1 16 HELIX 11 11 THR H 257 PHE H 268 1 12 HELIX 12 12 ASN H 280 ASN H 293 1 14 HELIX 13 13 ARG H 303 THR H 308 5 6 HELIX 14 14 ASP H 323 LYS H 327 5 5 HELIX 15 15 HIS H 335 GLN H 348 1 14 HELIX 16 16 ALA H 359 GLN H 368 1 10 HELIX 17 17 SER H 403 GLN H 415 1 13 HELIX 18 18 LEU H 493 PHE H 501 1 9 HELIX 19 19 ASP H 557 PHE H 563 1 7 HELIX 20 20 ARG H 568 SER H 581 1 14 HELIX 21 21 HIS H 602 GLY H 612 1 11 HELIX 22 22 GLY H 612 MET H 627 1 16 HELIX 23 23 GLN H 647 ALA H 661 1 15 HELIX 24 24 SER H 696 LEU H 710 1 15 SHEET 1 A 5 PHE H 16 LEU H 19 0 SHEET 2 A 5 VAL H 3 ALA H 7 -1 N VAL H 6 O PHE H 16 SHEET 3 A 5 GLN H 39 SER H 49 -1 O ILE H 44 N ALA H 7 SHEET 4 A 5 ARG H 31 PHE H 36 -1 N VAL H 32 O GLY H 43 SHEET 5 A 5 GLU H 64 ALA H 65 -1 O GLU H 64 N ARG H 33 SHEET 1 B 3 ILE H 149 TRP H 150 0 SHEET 2 B 3 TRP H 115 ALA H 119 -1 N TRP H 117 O ILE H 149 SHEET 3 B 3 ALA H 173 CYS H 177 -1 O ALA H 176 N TYR H 116 SHEET 1 C 7 VAL H 272 LEU H 275 0 SHEET 2 C 7 ILE H 298 GLY H 301 1 O ILE H 300 N LEU H 275 SHEET 3 C 7 GLN H 246 MET H 250 1 N VAL H 249 O VAL H 299 SHEET 4 C 7 LEU H 313 ASP H 319 1 O VAL H 317 N MET H 250 SHEET 5 C 7 PRO H 350 SER H 355 1 O ILE H 352 N ILE H 318 SHEET 6 C 7 SER H 217 GLY H 223 1 N TRP H 219 O LEU H 353 SHEET 7 C 7 ARG H 372 LEU H 376 1 O ARG H 372 N LEU H 220 SHEET 1 D 6 ALA H 386 ASP H 392 0 SHEET 2 D 6 GLY H 591 THR H 597 1 O LEU H 595 N LEU H 391 SHEET 3 D 6 VAL H 550 LEU H 555 1 N VAL H 553 O GLU H 592 SHEET 4 D 6 GLN H 419 PHE H 423 1 N ILE H 421 O SER H 554 SHEET 5 D 6 ARG H 533 GLY H 537 1 O LEU H 535 N VAL H 420 SHEET 6 D 6 ILE H 506 ARG H 508 1 N SER H 507 O ILE H 536 SHEET 1 E 2 ALA H 432 CYS H 435 0 SHEET 2 E 2 LEU H 483 VAL H 486 -1 O VAL H 484 N LEU H 434 SHEET 1 F 3 THR H 452 HIS H 454 0 SHEET 2 F 3 HIS H 459 ARG H 461 -1 O ARG H 461 N THR H 452 SHEET 3 F 3 GLN H 468 PRO H 470 -1 O ARG H 469 N LEU H 460 SHEET 1 G 4 TRP H 670 PRO H 676 0 SHEET 2 G 4 TRP H 688 HIS H 694 -1 O GLN H 693 N TRP H 670 SHEET 3 G 4 SER H 634 ALA H 640 -1 N SER H 634 O HIS H 694 SHEET 4 G 4 VAL H 723 VAL H 726 -1 O ASP H 725 N LEU H 637 LINK SG CYS H 435 ZN ZN H 803 1555 1555 2.32 LINK SG CYS H 438 ZN ZN H 803 1555 1555 2.30 LINK SG CYS H 444 ZN ZN H 802 1555 1555 2.33 LINK SG CYS H 447 ZN ZN H 802 1555 1555 2.39 LINK SG CYS H 462 ZN ZN H 802 1555 1555 2.34 LINK SG CYS H 465 ZN ZN H 802 1555 1555 2.34 LINK SG CYS H 475 ZN ZN H 803 1555 1555 2.31 LINK SG CYS H 478 ZN ZN H 803 1555 1555 2.31 CISPEP 1 PRO H 630 PRO H 631 0 8.81 SITE 1 AC1 8 ILE H 224 GLY H 226 GLY H 228 LYS H 229 SITE 2 AC1 8 THR H 230 GLU H 231 ARG H 263 LYS H 543 SITE 1 AC2 4 CYS H 444 CYS H 447 CYS H 462 CYS H 465 SITE 1 AC3 4 CYS H 435 CYS H 438 CYS H 475 CYS H 478 CRYST1 85.433 85.433 111.682 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011705 0.006758 0.000000 0.00000 SCALE2 0.000000 0.013516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008954 0.00000