PDB Short entry for 4NLG HEADER TRANSFERASE/DNA 14-NOV-13 4NLG TITLE Y-FAMILY DNA POLYMERASE CHIMERA DBH-DPO4(243-245)-DBH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*G)-3'; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PRIMER DNA; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*TP*TP*AP*CP*GP*CP*CP*CP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP COMPND 15 *C)-3'; COMPND 16 CHAIN: T; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: TEMPLATE DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 2285; SOURCE 4 GENE: DBH, SACI_0554; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLR(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS TRANSLESION SYNTHESIS, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.MUKHERJEE,R.C.WILSON,J.D.PATA REVDAT 4 20-SEP-23 4NLG 1 REMARK SEQADV LINK REVDAT 3 14-MAY-14 4NLG 1 JRNL REVDAT 2 19-FEB-14 4NLG 1 JRNL REVDAT 1 22-JAN-14 4NLG 0 JRNL AUTH P.MUKHERJEE,R.C.WILSON,I.LAHIRI,J.D.PATA JRNL TITL THREE RESIDUES OF THE INTERDOMAIN LINKER DETERMINE THE JRNL TITL 2 CONFORMATION AND SINGLE-BASE DELETION FIDELITY OF Y-FAMILY JRNL TITL 3 TRANSLESION POLYMERASES. JRNL REF J.BIOL.CHEM. V. 289 6323 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24415763 JRNL DOI 10.1074/JBC.M113.537860 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1479) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 22557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6977 - 4.7936 0.99 2912 165 0.1450 0.1974 REMARK 3 2 4.7936 - 3.8076 0.99 2868 153 0.1436 0.2003 REMARK 3 3 3.8076 - 3.3271 0.97 2809 150 0.1746 0.2265 REMARK 3 4 3.3271 - 3.0233 0.96 2778 151 0.1880 0.2468 REMARK 3 5 3.0233 - 2.8068 0.92 2650 148 0.2241 0.2823 REMARK 3 6 2.8068 - 2.6414 0.89 2557 137 0.2385 0.3219 REMARK 3 7 2.6414 - 2.5092 0.86 2507 127 0.2484 0.3186 REMARK 3 8 2.5092 - 2.4000 0.81 2315 130 0.2517 0.3291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3508 REMARK 3 ANGLE : 1.180 4866 REMARK 3 CHIRALITY : 0.047 560 REMARK 3 PLANARITY : 0.005 506 REMARK 3 DIHEDRAL : 20.949 1407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'P') OR (CHAIN 'T') OR (CHAIN 'A' AND (RESSEQ REMARK 3 403:403)) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3314 243.2321 22.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.8335 T22: 0.4777 REMARK 3 T33: 0.5082 T12: -0.1005 REMARK 3 T13: 0.0351 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.1791 L22: 3.8020 REMARK 3 L33: 2.8345 L12: -0.7864 REMARK 3 L13: 0.2024 L23: 2.9998 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.1932 S13: 0.4795 REMARK 3 S21: -0.0317 S22: -0.0337 S23: -0.4026 REMARK 3 S31: -0.5980 S32: -0.1843 S33: -0.1485 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 1:170)) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4672 222.0900 7.0630 REMARK 3 T TENSOR REMARK 3 T11: 0.3180 T22: 0.4488 REMARK 3 T33: 0.2640 T12: 0.0232 REMARK 3 T13: 0.0038 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.9486 L22: 2.3234 REMARK 3 L33: 4.7840 L12: -0.5479 REMARK 3 L13: 0.7044 L23: 0.6785 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0326 S13: -0.0767 REMARK 3 S21: 0.1443 S22: 0.0748 S23: -0.3286 REMARK 3 S31: 0.1663 S32: 0.8812 S33: -0.0559 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 171:245)) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5914 245.1380 13.5892 REMARK 3 T TENSOR REMARK 3 T11: 1.1782 T22: 0.8311 REMARK 3 T33: 0.9981 T12: -0.2815 REMARK 3 T13: -0.0298 T23: 0.1983 REMARK 3 L TENSOR REMARK 3 L11: 2.2278 L22: 3.3490 REMARK 3 L33: 2.9973 L12: 0.6250 REMARK 3 L13: -0.8297 L23: -0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: 0.4886 S13: 1.2779 REMARK 3 S21: -0.4740 S22: 0.3901 S23: -0.4495 REMARK 3 S31: -1.3781 S32: 0.5549 S33: -0.2470 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 246:344)) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1804 233.7951 22.4076 REMARK 3 T TENSOR REMARK 3 T11: 0.3912 T22: 0.3432 REMARK 3 T33: 0.2819 T12: -0.0130 REMARK 3 T13: 0.0518 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 4.6118 L22: 2.8383 REMARK 3 L33: 5.9959 L12: -0.1142 REMARK 3 L13: 0.3770 L23: 0.7327 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.2925 S13: 0.3615 REMARK 3 S21: 0.0631 S22: -0.1163 S23: 0.0607 REMARK 3 S31: -0.2775 S32: -0.0788 S33: 0.0783 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.19100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4F4Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG3350, 0.1 M CALCIUM ACETATE, 5% REMARK 280 GLYCEROL, 0.25 M SUCROSE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.09650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.53350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.09650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.53350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 345 REMARK 465 THR A 346 REMARK 465 ASN A 347 REMARK 465 LEU A 348 REMARK 465 SER A 349 REMARK 465 ASP A 350 REMARK 465 PHE A 351 REMARK 465 PHE A 352 REMARK 465 ASP A 353 REMARK 465 ILE A 354 REMARK 465 GLY A 355 REMARK 465 GLY A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 DT T 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG T 10 O3' DG T 10 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA T 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC T 7 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC T 7 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT T 9 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 58.48 18.65 REMARK 500 ALA A 68 59.80 -140.41 REMARK 500 SER A 103 -173.71 -173.59 REMARK 500 GLN A 201 -7.48 -140.86 REMARK 500 THR A 218 -10.49 -157.58 REMARK 500 SER A 235 76.44 -161.46 REMARK 500 LYS A 327 -22.97 81.82 REMARK 500 ARG A 328 -30.40 -131.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 7 OD2 49.2 REMARK 620 3 ASP A 105 OD1 68.6 116.6 REMARK 620 4 GLU A 106 OE1 94.3 73.0 104.2 REMARK 620 5 DCP A 403 O2A 84.1 97.8 85.8 168.6 REMARK 620 6 HOH A 508 O 117.6 71.8 169.0 84.8 85.9 REMARK 620 7 DG P 13 O3' 149.4 161.3 81.9 100.8 85.9 90.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 99.4 REMARK 620 3 ASP A 105 OD2 70.5 79.2 REMARK 620 4 DCP A 403 O3G 116.4 114.1 162.1 REMARK 620 5 DCP A 403 O2A 87.7 162.1 87.7 76.4 REMARK 620 6 DCP A 403 O2B 151.7 91.8 86.4 81.5 74.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 403 DBREF 4NLG A 1 354 UNP Q4JB80 DPO4_SULAC 1 354 DBREF 4NLG P 1 13 PDB 4NLG 4NLG 1 13 DBREF 4NLG T 1 19 PDB 4NLG 4NLG 1 19 SEQADV 4NLG ARG A 243 UNP Q4JB80 LYS 243 ENGINEERED MUTATION SEQADV 4NLG LYS A 244 UNP Q4JB80 ILE 244 ENGINEERED MUTATION SEQADV 4NLG SER A 245 UNP Q4JB80 PRO 245 ENGINEERED MUTATION SEQADV 4NLG GLY A 355 UNP Q4JB80 EXPRESSION TAG SEQADV 4NLG GLY A 356 UNP Q4JB80 EXPRESSION TAG SEQADV 4NLG HIS A 357 UNP Q4JB80 EXPRESSION TAG SEQADV 4NLG HIS A 358 UNP Q4JB80 EXPRESSION TAG SEQADV 4NLG HIS A 359 UNP Q4JB80 EXPRESSION TAG SEQADV 4NLG HIS A 360 UNP Q4JB80 EXPRESSION TAG SEQADV 4NLG HIS A 361 UNP Q4JB80 EXPRESSION TAG SEQADV 4NLG HIS A 362 UNP Q4JB80 EXPRESSION TAG SEQRES 1 A 362 MET ILE VAL ILE PHE VAL ASP PHE ASP TYR PHE PHE ALA SEQRES 2 A 362 GLN VAL GLU GLU VAL LEU ASN PRO GLN TYR LYS GLY LYS SEQRES 3 A 362 PRO LEU VAL VAL CYS VAL TYR SER GLY ARG THR LYS THR SEQRES 4 A 362 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 362 LEU GLY VAL LYS ALA GLY MET PRO ILE ILE LYS ALA MET SEQRES 6 A 362 GLN ILE ALA PRO SER ALA ILE TYR VAL PRO MET ARG LYS SEQRES 7 A 362 PRO ILE TYR GLU ALA PHE SER ASN ARG ILE MET ASN LEU SEQRES 8 A 362 LEU ASN LYS HIS ALA ASP LYS ILE GLU VAL ALA SER ILE SEQRES 9 A 362 ASP GLU ALA TYR LEU ASP VAL THR ASN LYS VAL GLU GLY SEQRES 10 A 362 ASN PHE GLU ASN GLY ILE GLU LEU ALA ARG LYS ILE LYS SEQRES 11 A 362 GLN GLU ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL SEQRES 12 A 362 GLY VAL ALA PRO ASN LYS ILE LEU ALA LYS ILE ILE ALA SEQRES 13 A 362 ASP LYS SER LYS PRO ASN GLY LEU GLY VAL ILE ARG PRO SEQRES 14 A 362 THR GLU VAL GLN ASP PHE LEU ASN GLU LEU ASP ILE ASP SEQRES 15 A 362 GLU ILE PRO GLY ILE GLY SER VAL LEU ALA ARG ARG LEU SEQRES 16 A 362 ASN GLU LEU GLY ILE GLN LYS LEU ARG ASP ILE LEU SER SEQRES 17 A 362 LYS ASN TYR ASN GLU LEU GLU LYS ILE THR GLY LYS ALA SEQRES 18 A 362 LYS ALA LEU TYR LEU LEU LYS LEU ALA GLN ASN LYS TYR SEQRES 19 A 362 SER GLU PRO VAL GLU ASN LYS SER ARG LYS SER HIS GLY SEQRES 20 A 362 ARG TYR LEU THR LEU PRO TYR ASN THR ARG ASP VAL LYS SEQRES 21 A 362 VAL ILE LEU PRO TYR LEU LYS LYS ALA ILE ASN GLU ALA SEQRES 22 A 362 TYR ASN LYS VAL ASN GLY ILE PRO MET ARG ILE THR VAL SEQRES 23 A 362 ILE ALA ILE MET GLU ASP LEU ASP ILE LEU SER LYS GLY SEQRES 24 A 362 LYS LYS PHE LYS HIS GLY ILE SER ILE ASP ASN ALA TYR SEQRES 25 A 362 LYS VAL ALA GLU ASP LEU LEU ARG GLU LEU LEU VAL ARG SEQRES 26 A 362 ASP LYS ARG ARG ASN VAL ARG ARG ILE GLY VAL LYS LEU SEQRES 27 A 362 ASP ASN ILE ILE ILE ASN LYS THR ASN LEU SER ASP PHE SEQRES 28 A 362 PHE ASP ILE GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 P 13 DG DG DC DA DC DT DG DA DT DC DG DG DG SEQRES 1 T 19 DT DT DA DC DG DC DC DC DT DG DA DT DC SEQRES 2 T 19 DA DG DT DG DC DC HET CA A 401 1 HET CA A 402 1 HET DCP A 403 28 HETNAM CA CALCIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 4 CA 2(CA 2+) FORMUL 6 DCP C9 H16 N3 O13 P3 FORMUL 7 HOH *41(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LEU A 53 1 7 HELIX 4 4 PRO A 60 ALA A 68 1 9 HELIX 5 5 ARG A 77 LYS A 94 1 18 HELIX 6 6 ASN A 118 LYS A 138 1 21 HELIX 7 7 ASN A 148 LYS A 158 1 11 HELIX 8 8 ARG A 168 THR A 170 5 3 HELIX 9 9 GLU A 171 LEU A 179 1 9 HELIX 10 10 GLY A 188 GLU A 197 1 10 HELIX 11 11 ARG A 204 LYS A 209 1 6 HELIX 12 12 ASN A 210 LEU A 214 5 5 HELIX 13 13 THR A 218 GLN A 231 1 14 HELIX 14 14 ASP A 258 ASN A 275 1 18 HELIX 15 15 SER A 307 LYS A 327 1 21 SHEET 1 A 5 LYS A 98 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N ILE A 4 O LEU A 109 SHEET 4 A 5 VAL A 141 ALA A 146 -1 O ALA A 146 N VAL A 3 SHEET 5 A 5 LEU A 164 VAL A 166 1 O GLY A 165 N VAL A 143 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 LEU A 28 TYR A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 ILE A 72 PRO A 75 1 O VAL A 74 N CYS A 31 SHEET 1 C 4 SER A 245 THR A 256 0 SHEET 2 C 4 VAL A 331 ILE A 343 -1 O ILE A 334 N LEU A 250 SHEET 3 C 4 GLY A 279 MET A 290 -1 N ILE A 289 O ARG A 332 SHEET 4 C 4 ILE A 295 LYS A 301 -1 O LYS A 298 N VAL A 286 LINK OD1 ASP A 7 CA CA A 401 1555 1555 2.51 LINK OD2 ASP A 7 CA CA A 401 1555 1555 2.72 LINK OD1 ASP A 7 CA CA A 402 1555 1555 2.49 LINK O PHE A 8 CA CA A 402 1555 1555 2.24 LINK OD1 ASP A 105 CA CA A 401 1555 1555 2.47 LINK OD2 ASP A 105 CA CA A 402 1555 1555 2.33 LINK OE1 GLU A 106 CA CA A 401 1555 1555 3.16 LINK CA CA A 401 O2A DCP A 403 1555 1555 2.55 LINK CA CA A 401 O HOH A 508 1555 1555 2.37 LINK CA CA A 401 O3' DG P 13 1555 1555 2.65 LINK CA CA A 402 O3G DCP A 403 1555 1555 2.23 LINK CA CA A 402 O2A DCP A 403 1555 1555 2.41 LINK CA CA A 402 O2B DCP A 403 1555 1555 2.43 CISPEP 1 LYS A 160 PRO A 161 0 -7.62 SITE 1 AC1 7 ASP A 7 ASP A 105 GLU A 106 CA A 402 SITE 2 AC1 7 DCP A 403 HOH A 508 DG P 13 SITE 1 AC2 5 ASP A 7 PHE A 8 ASP A 105 CA A 401 SITE 2 AC2 5 DCP A 403 SITE 1 AC3 16 ASP A 7 PHE A 8 ASP A 9 TYR A 10 SITE 2 AC3 16 PHE A 11 PHE A 12 THR A 45 TYR A 48 SITE 3 AC3 16 ARG A 51 ASP A 105 LYS A 160 CA A 401 SITE 4 AC3 16 CA A 402 HOH A 513 DG P 13 DG T 5 CRYST1 120.193 103.067 53.049 90.00 105.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008320 0.000000 0.002290 0.00000 SCALE2 0.000000 0.009702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019552 0.00000