PDB Short entry for 4NRW HEADER HYDROLASE, LYASE/DNA 27-NOV-13 4NRW TITLE MVNEI1-G86D COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NEI1 (MVNEI1) DNA GLYCOSYLASE, FAPY-DNA GLYCOSYLASE, DNA- COMPND 5 (APURINIC OR APYRIMIDINIC SITE) LYASE, AP LYASE; COMPND 6 EC: 3.2.2.23, 4.2.99.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-D(*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'; COMPND 11 CHAIN: C, E; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: COMPLEMENTARY DNA STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*C)-3'; COMPND 16 CHAIN: D, F; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: FURAN-CONTAINING DNA STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_COMMON: APMV; SOURCE 4 ORGANISM_TAXID: 212035; SOURCE 5 GENE: ENDONUCLEASE VIII (NEI) 1, MIMI_L315; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS ZINC-LESS FINGER DOMAIN, DNA GLYCOSYLASE, HELIX TWO-TURNS HELIX KEYWDS 2 MOTIF, THF, DNA LYASE, HYDROLASE, LYASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.PRAKASH,S.DOUBLIE REVDAT 4 20-SEP-23 4NRW 1 SEQADV LINK REVDAT 3 12-FEB-14 4NRW 1 JRNL REVDAT 2 05-FEB-14 4NRW 1 JRNL REVDAT 1 01-JAN-14 4NRW 0 JRNL AUTH A.PRAKASH,B.L.CARROLL,J.B.SWEASY,S.S.WALLACE,S.DOUBLIE JRNL TITL GENOME AND CANCER SINGLE NUCLEOTIDE POLYMORPHISMS OF THE JRNL TITL 2 HUMAN NEIL1 DNA GLYCOSYLASE: ACTIVITY, STRUCTURE, AND THE JRNL TITL 3 EFFECT OF EDITING. JRNL REF DNA REPAIR V. 14 17 2014 JRNL REFN ISSN 1568-7864 JRNL PMID 24382305 JRNL DOI 10.1016/J.DNAREP.2013.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 17318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9667 - 6.5163 0.99 1215 136 0.2222 0.2732 REMARK 3 2 6.5163 - 5.2452 1.00 1224 149 0.2472 0.3050 REMARK 3 3 5.2452 - 4.6042 0.99 1195 145 0.2327 0.2799 REMARK 3 4 4.6042 - 4.1934 0.99 1209 125 0.2308 0.2699 REMARK 3 5 4.1934 - 3.8985 0.99 1192 124 0.2399 0.2856 REMARK 3 6 3.8985 - 3.6723 0.99 1202 138 0.2468 0.3564 REMARK 3 7 3.6723 - 3.4908 0.99 1211 139 0.2481 0.3063 REMARK 3 8 3.4908 - 3.3406 0.99 1195 135 0.2708 0.3207 REMARK 3 9 3.3406 - 3.2133 0.99 1205 111 0.2760 0.3261 REMARK 3 10 3.2133 - 3.1034 0.99 1181 144 0.3048 0.3325 REMARK 3 11 3.1034 - 3.0072 0.98 1192 134 0.3273 0.3581 REMARK 3 12 3.0072 - 2.9219 0.99 1207 125 0.3261 0.3591 REMARK 3 13 2.9219 - 2.8450 0.98 1132 153 0.3335 0.4125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5960 REMARK 3 ANGLE : 0.614 8257 REMARK 3 CHIRALITY : 0.041 872 REMARK 3 PLANARITY : 0.003 871 REMARK 3 DIHEDRAL : 15.557 2293 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7438 0.5680 115.2205 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.1345 REMARK 3 T33: 0.0799 T12: -0.0017 REMARK 3 T13: -0.0055 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.2139 L22: 1.0801 REMARK 3 L33: 0.4165 L12: -0.0148 REMARK 3 L13: 0.0283 L23: 0.1843 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0393 S13: -0.0143 REMARK 3 S21: -0.1342 S22: 0.0411 S23: -0.0330 REMARK 3 S31: -0.0666 S32: -0.0082 S33: 0.0034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1480 18.8547 75.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1530 REMARK 3 T33: 0.1435 T12: -0.0285 REMARK 3 T13: 0.0245 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.9328 L22: 1.9058 REMARK 3 L33: 0.5244 L12: -0.3393 REMARK 3 L13: 0.2457 L23: -0.5967 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.1047 S13: 0.0870 REMARK 3 S21: -0.1217 S22: -0.0657 S23: 0.0917 REMARK 3 S31: 0.1185 S32: -0.0217 S33: -0.0042 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3344 -8.5676 137.4811 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.5634 REMARK 3 T33: 0.3778 T12: -0.0295 REMARK 3 T13: 0.0560 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.1786 L22: 0.2859 REMARK 3 L33: 0.1167 L12: 0.2090 REMARK 3 L13: 0.1559 L23: 0.1881 REMARK 3 S TENSOR REMARK 3 S11: 0.0829 S12: -0.2157 S13: -0.2018 REMARK 3 S21: 0.2983 S22: -0.1354 S23: -0.1521 REMARK 3 S31: -0.2133 S32: 0.1263 S33: -0.0107 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6000 -7.0861 130.4792 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.3787 REMARK 3 T33: 0.4067 T12: -0.0759 REMARK 3 T13: 0.0423 T23: -0.1040 REMARK 3 L TENSOR REMARK 3 L11: 0.1026 L22: 0.0456 REMARK 3 L33: 1.9946 L12: 0.0479 REMARK 3 L13: 0.4147 L23: 0.1830 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.3401 S13: -0.3921 REMARK 3 S21: -0.0749 S22: 0.0049 S23: -0.1027 REMARK 3 S31: 0.5314 S32: -0.5569 S33: -0.2809 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 14 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5661 -12.2666 134.2221 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.4740 REMARK 3 T33: 0.5694 T12: -0.0324 REMARK 3 T13: -0.0504 T23: 0.1481 REMARK 3 L TENSOR REMARK 3 L11: 2.4777 L22: 2.1723 REMARK 3 L33: 2.5437 L12: -0.1332 REMARK 3 L13: 1.7291 L23: 1.5761 REMARK 3 S TENSOR REMARK 3 S11: -0.2290 S12: -0.9160 S13: -0.0404 REMARK 3 S21: 0.1538 S22: -0.1738 S23: 0.6735 REMARK 3 S31: 0.2054 S32: -0.3195 S33: -0.4314 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6415 28.7174 97.3204 REMARK 3 T TENSOR REMARK 3 T11: 0.2744 T22: 0.7503 REMARK 3 T33: 0.7611 T12: -0.0584 REMARK 3 T13: -0.0504 T23: -0.1069 REMARK 3 L TENSOR REMARK 3 L11: 0.1890 L22: 0.5208 REMARK 3 L33: 0.2107 L12: -0.2521 REMARK 3 L13: 0.1861 L23: -0.2677 REMARK 3 S TENSOR REMARK 3 S11: -0.3112 S12: -0.0794 S13: 0.3153 REMARK 3 S21: 0.1969 S22: 0.0134 S23: 0.1261 REMARK 3 S31: -0.0498 S32: 0.1980 S33: -0.0221 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 7 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6634 27.0435 90.5099 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.3196 REMARK 3 T33: 0.4214 T12: -0.0791 REMARK 3 T13: -0.0526 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.4450 L22: 0.3445 REMARK 3 L33: 1.3735 L12: -0.3340 REMARK 3 L13: -0.5003 L23: 0.1140 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.4861 S13: 0.4589 REMARK 3 S21: -0.0442 S22: 0.0006 S23: -0.0521 REMARK 3 S31: -0.6097 S32: 0.2872 S33: 0.1529 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 14 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4833 32.4139 94.2263 REMARK 3 T TENSOR REMARK 3 T11: -0.0532 T22: 0.6346 REMARK 3 T33: 0.9523 T12: -0.1033 REMARK 3 T13: -0.0658 T23: -0.1308 REMARK 3 L TENSOR REMARK 3 L11: 0.2834 L22: 0.7749 REMARK 3 L33: 0.5357 L12: 0.0943 REMARK 3 L13: -0.3467 L23: 0.1352 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: -0.4239 S13: 0.0014 REMARK 3 S21: 0.2712 S22: -0.1085 S23: -0.5814 REMARK 3 S31: -0.1480 S32: 0.4706 S33: -0.3284 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 21 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3608 22.9079 93.4747 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.8646 REMARK 3 T33: 0.7005 T12: -0.1055 REMARK 3 T13: 0.1185 T23: -0.2201 REMARK 3 L TENSOR REMARK 3 L11: 1.0002 L22: 3.5977 REMARK 3 L33: 0.5789 L12: -0.3945 REMARK 3 L13: 0.7205 L23: -0.7319 REMARK 3 S TENSOR REMARK 3 S11: -0.2299 S12: -0.7086 S13: 0.2978 REMARK 3 S21: 0.6056 S22: -0.0629 S23: 0.7471 REMARK 3 S31: 0.0217 S32: -0.5319 S33: 0.0639 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 21 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5786 -2.9646 133.3387 REMARK 3 T TENSOR REMARK 3 T11: -0.0329 T22: 0.5290 REMARK 3 T33: 0.6786 T12: -0.2004 REMARK 3 T13: -0.4031 T23: 0.1835 REMARK 3 L TENSOR REMARK 3 L11: 1.0438 L22: 0.8567 REMARK 3 L33: 0.9371 L12: -0.0362 REMARK 3 L13: 0.7652 L23: 0.2183 REMARK 3 S TENSOR REMARK 3 S11: -0.0803 S12: -0.1056 S13: 0.0762 REMARK 3 S21: 0.9108 S22: -0.1541 S23: -0.6130 REMARK 3 S31: 0.0045 S32: 0.2432 S33: -0.0394 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2596 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 252 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 226 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NRW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MAR MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.845 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.18500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 3A46 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% W/V PEG8000, 0.125 M POTASSIUM REMARK 280 CHLORIDE, 0.05 M MAGNESIUM SULFATE, 100 MM MES, PH 5.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.84100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 287 REMARK 465 LEU A 288 REMARK 465 GLU A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 LYS B 287 REMARK 465 LEU B 288 REMARK 465 GLU B 289 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ASP A 144 CG OD1 OD2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 ASN B 227 CG OD1 ND2 REMARK 470 ASP B 249 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 2 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC F 14 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT F 22 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -160.05 -128.30 REMARK 500 THR A 85 51.48 -119.72 REMARK 500 ASP A 144 67.06 -105.16 REMARK 500 LYS A 154 58.10 -95.57 REMARK 500 HIS A 238 73.50 53.41 REMARK 500 GLU B 3 -164.65 -128.78 REMARK 500 GLU B 92 91.12 -68.94 REMARK 500 ASP B 144 50.09 -100.11 REMARK 500 LYS B 154 42.29 -93.00 REMARK 500 LYS B 165 -52.40 -138.60 REMARK 500 THR B 195 -163.20 -79.34 REMARK 500 HIS B 238 71.90 52.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NRV RELATED DB: PDB DBREF 4NRW A 2 287 UNP Q5UQ00 FPG_MIMIV 2 287 DBREF 4NRW B 2 287 UNP Q5UQ00 FPG_MIMIV 2 287 DBREF 4NRW C 1 13 PDB 4NRW 4NRW 1 13 DBREF 4NRW E 1 13 PDB 4NRW 4NRW 1 13 DBREF 4NRW D 14 26 PDB 4NRW 4NRW 14 26 DBREF 4NRW F 14 26 PDB 4NRW 4NRW 14 26 SEQADV 4NRW ASP A 86 UNP Q5UQ00 GLY 86 ENGINEERED MUTATION SEQADV 4NRW LEU A 288 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW GLU A 289 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS A 290 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS A 291 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS A 292 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS A 293 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS A 294 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS A 295 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW ASP B 86 UNP Q5UQ00 GLY 86 ENGINEERED MUTATION SEQADV 4NRW LEU B 288 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW GLU B 289 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS B 290 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS B 291 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS B 292 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS B 293 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS B 294 UNP Q5UQ00 EXPRESSION TAG SEQADV 4NRW HIS B 295 UNP Q5UQ00 EXPRESSION TAG SEQRES 1 A 294 PRO GLU GLY PRO GLU VAL ALA LEU THR ALA ASP ILE LEU SEQRES 2 A 294 GLU LYS TYR PHE LYS GLY LYS THR LEU GLU TYR ILE ASP SEQRES 3 A 294 PHE ILE SER GLY ARG TYR SER LYS SER GLU PRO GLU GLY SEQRES 4 A 294 TYR ASP ASP PHE ILE ALA ASN LEU PRO LEU LYS VAL SER SEQRES 5 A 294 ASN VAL ASP THR LYS GLY LYS PHE LEU TRP PHE GLU LEU SEQRES 6 A 294 PHE ASP PRO ASN ASP LYS SER ASN LYS TRP TYR ILE TRP SEQRES 7 A 294 ASN THR PHE GLY LEU THR ASP MET TRP SER LEU PHE GLU SEQRES 8 A 294 ALA LYS TYR THR ARG ALA VAL LEU SER PHE ASP ASN GLU SEQRES 9 A 294 LEU MET ALA TYR PHE SER ASP MET ARG ASN PHE GLY THR SEQRES 10 A 294 PHE LYS PHE SER ASN SER GLU LYS GLU LEU LYS ARG LYS SEQRES 11 A 294 LEU ASN GLU LEU GLY PRO ASP PHE LEU LYS ASN ASP ASP SEQRES 12 A 294 ILE ASP ILE SER LYS ILE LYS LYS TYR LYS GLN PRO ILE SEQRES 13 A 294 VAL ALA LEU LEU MET ASP GLN LYS LYS ILE GLY SER GLY SEQRES 14 A 294 LEU GLY ASN TYR LEU VAL ALA GLU ILE LEU TYR ARG ALA SEQRES 15 A 294 LYS ILE ASP PRO HIS LYS LEU GLY SER ASN LEU THR ASP SEQRES 16 A 294 GLN GLU ILE GLU ASN LEU TRP TYR TRP ILE LYS TYR GLU SEQRES 17 A 294 THR LYS LEU ALA TYR ASP SER ASN HIS ILE GLY TYR MET SEQRES 18 A 294 VAL ASN LEU GLU ASN GLU SER SER LYS ILE GLY ARG LYS SEQRES 19 A 294 ASN TYR HIS PRO ASN ILE HIS PRO THR GLU LYS GLU PHE SEQRES 20 A 294 ASP PHE LEU VAL TYR ARG LYS LYS LYS ASP PRO ASN GLY SEQRES 21 A 294 ASN LYS VAL ILE ALA ASP LYS ILE ILE GLY SER GLY LYS SEQRES 22 A 294 ASN LYS ARG THR THR TYR TRP ALA PRO ALA ILE GLN LYS SEQRES 23 A 294 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 294 PRO GLU GLY PRO GLU VAL ALA LEU THR ALA ASP ILE LEU SEQRES 2 B 294 GLU LYS TYR PHE LYS GLY LYS THR LEU GLU TYR ILE ASP SEQRES 3 B 294 PHE ILE SER GLY ARG TYR SER LYS SER GLU PRO GLU GLY SEQRES 4 B 294 TYR ASP ASP PHE ILE ALA ASN LEU PRO LEU LYS VAL SER SEQRES 5 B 294 ASN VAL ASP THR LYS GLY LYS PHE LEU TRP PHE GLU LEU SEQRES 6 B 294 PHE ASP PRO ASN ASP LYS SER ASN LYS TRP TYR ILE TRP SEQRES 7 B 294 ASN THR PHE GLY LEU THR ASP MET TRP SER LEU PHE GLU SEQRES 8 B 294 ALA LYS TYR THR ARG ALA VAL LEU SER PHE ASP ASN GLU SEQRES 9 B 294 LEU MET ALA TYR PHE SER ASP MET ARG ASN PHE GLY THR SEQRES 10 B 294 PHE LYS PHE SER ASN SER GLU LYS GLU LEU LYS ARG LYS SEQRES 11 B 294 LEU ASN GLU LEU GLY PRO ASP PHE LEU LYS ASN ASP ASP SEQRES 12 B 294 ILE ASP ILE SER LYS ILE LYS LYS TYR LYS GLN PRO ILE SEQRES 13 B 294 VAL ALA LEU LEU MET ASP GLN LYS LYS ILE GLY SER GLY SEQRES 14 B 294 LEU GLY ASN TYR LEU VAL ALA GLU ILE LEU TYR ARG ALA SEQRES 15 B 294 LYS ILE ASP PRO HIS LYS LEU GLY SER ASN LEU THR ASP SEQRES 16 B 294 GLN GLU ILE GLU ASN LEU TRP TYR TRP ILE LYS TYR GLU SEQRES 17 B 294 THR LYS LEU ALA TYR ASP SER ASN HIS ILE GLY TYR MET SEQRES 18 B 294 VAL ASN LEU GLU ASN GLU SER SER LYS ILE GLY ARG LYS SEQRES 19 B 294 ASN TYR HIS PRO ASN ILE HIS PRO THR GLU LYS GLU PHE SEQRES 20 B 294 ASP PHE LEU VAL TYR ARG LYS LYS LYS ASP PRO ASN GLY SEQRES 21 B 294 ASN LYS VAL ILE ALA ASP LYS ILE ILE GLY SER GLY LYS SEQRES 22 B 294 ASN LYS ARG THR THR TYR TRP ALA PRO ALA ILE GLN LYS SEQRES 23 B 294 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 13 DG DT DA DG DA DC DC DT DG DG DA DC DG SEQRES 1 D 13 DC DG DT DC DC DA 3DR DG DT DC DT DA DC SEQRES 1 E 13 DG DT DA DG DA DC DC DT DG DG DA DC DG SEQRES 1 F 13 DC DG DT DC DC DA 3DR DG DT DC DT DA DC HET 3DR D 20 11 HET 3DR F 20 11 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 4 3DR 2(C5 H11 O6 P) FORMUL 7 HOH *8(H2 O) HELIX 1 1 GLU A 3 LYS A 19 1 17 HELIX 2 2 GLY A 31 LYS A 35 5 5 HELIX 3 3 GLY A 40 ALA A 46 1 7 HELIX 4 4 SER A 124 GLU A 134 1 11 HELIX 5 5 ASP A 146 TYR A 153 5 8 HELIX 6 6 PRO A 156 ASP A 163 1 8 HELIX 7 7 GLY A 172 ALA A 183 1 12 HELIX 8 8 LEU A 190 LEU A 194 5 5 HELIX 9 9 THR A 195 SER A 216 1 22 HELIX 10 10 MET A 222 ASN A 224 5 3 HELIX 11 11 LEU A 225 SER A 230 1 6 HELIX 12 12 GLU B 3 LYS B 19 1 17 HELIX 13 13 GLY B 31 LYS B 35 5 5 HELIX 14 14 GLY B 40 ILE B 45 1 6 HELIX 15 15 SER B 124 GLU B 134 1 11 HELIX 16 16 ASP B 146 TYR B 153 5 8 HELIX 17 17 PRO B 156 ASP B 163 1 8 HELIX 18 18 GLY B 172 ALA B 183 1 12 HELIX 19 19 LEU B 190 LEU B 194 5 5 HELIX 20 20 ASP B 196 ASP B 215 1 20 HELIX 21 21 MET B 222 ASN B 224 5 3 HELIX 22 22 LEU B 225 SER B 230 1 6 SHEET 1 A 8 ASP A 86 SER A 89 0 SHEET 2 A 8 MET A 107 ASP A 112 -1 O SER A 111 N MET A 87 SHEET 3 A 8 THR A 96 PHE A 102 -1 N LEU A 100 O ALA A 108 SHEET 4 A 8 THR A 22 ASP A 27 -1 N TYR A 25 O SER A 101 SHEET 5 A 8 LEU A 50 THR A 57 -1 O LEU A 50 N LEU A 23 SHEET 6 A 8 PHE A 61 PHE A 67 -1 O PHE A 67 N LYS A 51 SHEET 7 A 8 TRP A 76 THR A 81 -1 O TRP A 76 N LEU A 66 SHEET 8 A 8 THR A 118 SER A 122 -1 O LYS A 120 N TRP A 79 SHEET 1 B 2 ILE A 265 ASP A 267 0 SHEET 2 B 2 THR A 279 TRP A 281 -1 O THR A 279 N ASP A 267 SHEET 1 C 8 ASP B 86 SER B 89 0 SHEET 2 C 8 LEU B 106 ASP B 112 -1 O SER B 111 N MET B 87 SHEET 3 C 8 THR B 96 PHE B 102 -1 N ARG B 97 O PHE B 110 SHEET 4 C 8 THR B 22 PHE B 28 -1 N TYR B 25 O SER B 101 SHEET 5 C 8 LEU B 50 LYS B 58 -1 O LEU B 50 N LEU B 23 SHEET 6 C 8 PHE B 61 ASP B 68 -1 O PHE B 67 N LYS B 51 SHEET 7 C 8 ASP B 71 THR B 81 -1 O TRP B 76 N LEU B 66 SHEET 8 C 8 THR B 118 SER B 122 -1 O LYS B 120 N TRP B 79 SHEET 1 D 2 ILE B 265 ASP B 267 0 SHEET 2 D 2 THR B 279 TRP B 281 -1 O THR B 279 N ASP B 267 LINK O3' DA D 19 P 3DR D 20 1555 1555 1.61 LINK O3' 3DR D 20 P DG D 21 1555 1555 1.61 LINK O3' DA F 19 P 3DR F 20 1555 1555 1.61 LINK O3' 3DR F 20 P DG F 21 1555 1555 1.61 CISPEP 1 LEU A 48 PRO A 49 0 2.67 CISPEP 2 LEU B 48 PRO B 49 0 2.98 CRYST1 39.401 121.682 79.993 90.00 95.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025380 0.000000 0.002524 0.00000 SCALE2 0.000000 0.008218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012563 0.00000