PDB Short entry for 4NY8
HEADER    TRANSFERASE, LYASE/DNA                  10-DEC-13   4NY8              
TITLE     DNA POLYMERASE BETA WITH O6MG IN THE TEMPLATE BASE OPPOSITE TO        
TITLE    2 INCOMING NON-HYDROLYZABLE CTP WITH MANGANESE IN THE ACTIVE SITE      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 10-335;                                       
COMPND   5 EC: 2.7.7.7, 4.2.99.-;                                               
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: 5'-D(*CP*CP*GP*AP*CP*(6OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)- 
COMPND   9 3';                                                                  
COMPND  10 CHAIN: T;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 OTHER_DETAILS: TEMPLATE;                                             
COMPND  13 MOL_ID: 3;                                                           
COMPND  14 MOLECULE: 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3';                    
COMPND  15 CHAIN: P;                                                            
COMPND  16 ENGINEERED: YES;                                                     
COMPND  17 OTHER_DETAILS: UPSTREAM PRIMER;                                      
COMPND  18 MOL_ID: 4;                                                           
COMPND  19 MOLECULE: 5'-D(P*GP*TP*CP*GP*G)-3';                                  
COMPND  20 CHAIN: D;                                                            
COMPND  21 ENGINEERED: YES;                                                     
COMPND  22 OTHER_DETAILS: DOWNSTREAM PRIMER                                     
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLB;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 MOL_ID: 3;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 MOL_ID: 4;                                                           
SOURCE  13 SYNTHETIC: YES                                                       
KEYWDS    DNA BINDING, DNA POLYMERASE FOLD, NUCLEOTIDYL TRANSFER, NUCLEOLUS,    
KEYWDS   2 TRANSFERASE, LYASE-DNA COMPLEX                                       
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.-C.KOAG,K.MIN,A.F.MONZINGO,S.LEE                                    
REVDAT   2   02-JUL-14 4NY8    1       JRNL                                     
REVDAT   1   16-APR-14 4NY8    0                                                
JRNL        AUTH   M.C.KOAG,S.LEE                                               
JRNL        TITL   METAL-DEPENDENT CONFORMATIONAL ACTIVATION EXPLAINS HIGHLY    
JRNL        TITL 2 PROMUTAGENIC REPLICATION ACROSS O6-METHYLGUANINE BY HUMAN    
JRNL        TITL 3 DNA POLYMERASE BETA.                                         
JRNL        REF    J.AM.CHEM.SOC.                V. 136  5709 2014              
JRNL        REFN                   ISSN 0002-7863                               
JRNL        PMID   24694247                                                     
JRNL        DOI    10.1021/JA500172D                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.25 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.8.1_1168)                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-                     
REMARK   3               : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO,              
REMARK   3               : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL            
REMARK   3               : MORIARTY,REETAL PAI,RANDY READ,JANE                  
REMARK   3               : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM             
REMARK   3               : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH,             
REMARK   3               : LAURENT STORONI,TOM TERWILLIGER,PETER                
REMARK   3               : ZWART                                                
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.82                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 97.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 20960                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.209                           
REMARK   3   R VALUE            (WORKING SET) : 0.206                           
REMARK   3   FREE R VALUE                     : 0.265                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.130                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1075                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 19.8228 -  4.4775    1.00     2591   138  0.1590 0.1907        
REMARK   3     2  4.4775 -  3.5606    1.00     2549   138  0.1728 0.2125        
REMARK   3     3  3.5606 -  3.1125    1.00     2550   130  0.2157 0.3013        
REMARK   3     4  3.1125 -  2.8288    0.99     2528   130  0.2523 0.3319        
REMARK   3     5  2.8288 -  2.6265    0.98     2474   124  0.2484 0.3070        
REMARK   3     6  2.6265 -  2.4720    0.97     2471   133  0.2486 0.3196        
REMARK   3     7  2.4720 -  2.3484    0.96     2438   127  0.2428 0.3102        
REMARK   3     8  2.3484 -  2.2460    0.91     2284   155  0.2324 0.3045        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.290            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.620           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 27.92                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 27.99                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.003           3336                                  
REMARK   3   ANGLE     :  1.034           4632                                  
REMARK   3   CHIRALITY :  0.077            511                                  
REMARK   3   PLANARITY :  0.003            486                                  
REMARK   3   DIHEDRAL  : 19.398           1302                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4NY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-14.                  
REMARK 100 THE RCSB ID CODE IS RCSB083805.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 05-NOV-13                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU MICROMAX-007 HF             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : AREA DETECTOR                      
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU RAXIS IV++                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 21222                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.246                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 1.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.4                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 49.73                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 14%-23% PEG3400, 350 MM SODIUM           
REMARK 280  ACETATE, 50 MM IMIDAZOLE, PH 7.5, VAPOR DIFFUSION, SITTING DROP     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       39.64400            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 20580 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, T, P                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     THR A    10                                                      
REMARK 465     THR A   205                                                      
REMARK 465     LYS A   206                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A 203    CG   CD   OE1  OE2                                  
REMARK 470     GLN A 207    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 244    CG   CD   CE   NZ                                   
REMARK 470     ASN A 245    CG   OD1  ND2                                       
REMARK 470     ASP A 246    CG   OD1  OD2                                       
REMARK 470     GLU A 247    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 280    CG   CD   CE   NZ                                   
REMARK 470     VAL A 303    CG1  CG2                                            
REMARK 470     LYS A 317    CG   CD   CE   NZ                                   
REMARK 470     GLN A 324    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 326    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O3G  0KX A   405     O    HOH A   507              2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG D   1   P      DG D   1   OP3    -0.125                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DG T  15   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A  50       31.40    -87.53                                   
REMARK 500    CYS A 178     -143.33   -101.29                                   
REMARK 500    PRO A 208        2.36    -66.03                                   
REMARK 500    ASN A 245     -111.93     54.46                                   
REMARK 500    ASN A 294     -168.72   -110.18                                   
REMARK 500    ASP A 332       40.06   -109.44                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 401  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 0KX A 405   O1A                                                    
REMARK 620 2 ASP A 190   OD1 108.4                                              
REMARK 620 3 HOH A 507   O   160.7  86.3                                        
REMARK 620 4 ASP A 192   OD2 103.6  90.0  88.4                                  
REMARK 620 5 0KX A 405   O3G 110.8 102.3  52.4 137.1                            
REMARK 620 6 0KX A 405   O2B  72.5 164.2  90.0 105.2  63.7                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 404  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A 101   O                                                      
REMARK 620 2  DG P   9   OP1 157.6                                              
REMARK 620 3 ILE A 106   O    96.0  97.9                                        
REMARK 620 4 VAL A 103   O   100.2  97.4  89.4                                  
REMARK 620 5 HOH P 103   O    74.1  88.6  89.3 174.0                            
REMARK 620 6 HOH P 101   O    86.4  79.0 176.2  93.1  88.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 402  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 192   OD1                                                    
REMARK 620 2 HOH A 584   O    84.0                                              
REMARK 620 3 0KX A 405   O1A  94.2 146.4                                        
REMARK 620 4 ASP A 190   OD2  97.7  63.2  83.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 403  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH P 103   O                                                      
REMARK 620 2 THR A 101   O    71.1                                              
REMARK 620 3 HOH P 101   O    86.4  81.4                                        
REMARK 620 N                    1     2                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KX A 405                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4NXZ   RELATED DB: PDB                                   
DBREF  4NY8 A   10   335  UNP    P06746   DPOLB_HUMAN     10    335             
DBREF  4NY8 T    1    16  PDB    4NY8     4NY8             1     16             
DBREF  4NY8 P    1    10  PDB    4NY8     4NY8             1     10             
DBREF  4NY8 D    1     5  PDB    4NY8     4NY8             1      5             
SEQRES   1 A  326  THR LEU ASN GLY GLY ILE THR ASP MET LEU THR GLU LEU          
SEQRES   2 A  326  ALA ASN PHE GLU LYS ASN VAL SER GLN ALA ILE HIS LYS          
SEQRES   3 A  326  TYR ASN ALA TYR ARG LYS ALA ALA SER VAL ILE ALA LYS          
SEQRES   4 A  326  TYR PRO HIS LYS ILE LYS SER GLY ALA GLU ALA LYS LYS          
SEQRES   5 A  326  LEU PRO GLY VAL GLY THR LYS ILE ALA GLU LYS ILE ASP          
SEQRES   6 A  326  GLU PHE LEU ALA THR GLY LYS LEU ARG LYS LEU GLU LYS          
SEQRES   7 A  326  ILE ARG GLN ASP ASP THR SER SER SER ILE ASN PHE LEU          
SEQRES   8 A  326  THR ARG VAL SER GLY ILE GLY PRO SER ALA ALA ARG LYS          
SEQRES   9 A  326  PHE VAL ASP GLU GLY ILE LYS THR LEU GLU ASP LEU ARG          
SEQRES  10 A  326  LYS ASN GLU ASP LYS LEU ASN HIS HIS GLN ARG ILE GLY          
SEQRES  11 A  326  LEU LYS TYR PHE GLY ASP PHE GLU LYS ARG ILE PRO ARG          
SEQRES  12 A  326  GLU GLU MET LEU GLN MET GLN ASP ILE VAL LEU ASN GLU          
SEQRES  13 A  326  VAL LYS LYS VAL ASP SER GLU TYR ILE ALA THR VAL CYS          
SEQRES  14 A  326  GLY SER PHE ARG ARG GLY ALA GLU SER SER GLY ASP MET          
SEQRES  15 A  326  ASP VAL LEU LEU THR HIS PRO SER PHE THR SER GLU SER          
SEQRES  16 A  326  THR LYS GLN PRO LYS LEU LEU HIS GLN VAL VAL GLU GLN          
SEQRES  17 A  326  LEU GLN LYS VAL HIS PHE ILE THR ASP THR LEU SER LYS          
SEQRES  18 A  326  GLY GLU THR LYS PHE MET GLY VAL CYS GLN LEU PRO SER          
SEQRES  19 A  326  LYS ASN ASP GLU LYS GLU TYR PRO HIS ARG ARG ILE ASP          
SEQRES  20 A  326  ILE ARG LEU ILE PRO LYS ASP GLN TYR TYR CYS GLY VAL          
SEQRES  21 A  326  LEU TYR PHE THR GLY SER ASP ILE PHE ASN LYS ASN MET          
SEQRES  22 A  326  ARG ALA HIS ALA LEU GLU LYS GLY PHE THR ILE ASN GLU          
SEQRES  23 A  326  TYR THR ILE ARG PRO LEU GLY VAL THR GLY VAL ALA GLY          
SEQRES  24 A  326  GLU PRO LEU PRO VAL ASP SER GLU LYS ASP ILE PHE ASP          
SEQRES  25 A  326  TYR ILE GLN TRP LYS TYR ARG GLU PRO LYS ASP ARG SER          
SEQRES  26 A  326  GLU                                                          
SEQRES   1 T   16   DC  DC  DG  DA  DC 6OG  DT  DC  DG  DC  DA  DT  DC          
SEQRES   2 T   16   DA  DG  DC                                                  
SEQRES   1 P   10   DG  DC  DT  DG  DA  DT  DG  DC  DG  DA                      
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
MODRES 4NY8 6OG T    6   DG  6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE              
HET    6OG  T   6      23                                                       
HET     MN  A 401       1                                                       
HET     MN  A 402       1                                                       
HET     NA  A 403       1                                                       
HET     NA  A 404       1                                                       
HET    0KX  A 405      28                                                       
HETNAM     6OG 6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE                            
HETNAM      MN MANGANESE (II) ION                                               
HETNAM      NA SODIUM ION                                                       
HETNAM     0KX 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)            
HETNAM   2 0KX  PHOSPHORYL]AMINO}PHOSPHORYL]CYTIDINE                            
FORMUL   2  6OG    C11 H16 N5 O7 P                                              
FORMUL   5   MN    2(MN 2+)                                                     
FORMUL   7   NA    2(NA 1+)                                                     
FORMUL   9  0KX    C9 H17 N4 O12 P3                                             
FORMUL  10  HOH   *120(H2 O)                                                    
HELIX    1   1 ASN A   12  VAL A   29  1                                  18    
HELIX    2   2 ALA A   32  LYS A   48  1                                  17    
HELIX    3   3 SER A   55  LYS A   60  1                                   6    
HELIX    4   4 GLY A   66  GLY A   80  1                                  15    
HELIX    5   5 LEU A   82  ASP A   91  1                                  10    
HELIX    6   6 ASP A   91  THR A  101  1                                  11    
HELIX    7   7 GLY A  107  GLU A  117  1                                  11    
HELIX    8   8 THR A  121  ASN A  128  1                                   8    
HELIX    9   9 GLU A  129  LEU A  132  5                                   4    
HELIX   10  10 ASN A  133  TYR A  142  1                                  10    
HELIX   11  11 TYR A  142  GLU A  147  1                                   6    
HELIX   12  12 ARG A  152  ASP A  170  1                                  19    
HELIX   13  13 CYS A  178  ARG A  183  1                                   6    
HELIX   14  14 LYS A  209  VAL A  221  1                                  13    
HELIX   15  15 PRO A  261  ASP A  263  5                                   3    
HELIX   16  16 GLN A  264  GLY A  274  1                                  11    
HELIX   17  17 SER A  275  LYS A  289  1                                  15    
HELIX   18  18 SER A  315  ILE A  323  1                                   9    
HELIX   19  19 GLU A  329  ARG A  333  5                                   5    
SHEET    1   A 2 ILE A 150  PRO A 151  0                                        
SHEET    2   A 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1   B 5 ILE A 174  VAL A 177  0                                        
SHEET    2   B 5 MET A 191  THR A 196 -1  O  THR A 196   N  ILE A 174           
SHEET    3   B 5 ARG A 253  LEU A 259  1  O  ARG A 258   N  LEU A 195           
SHEET    4   B 5 LYS A 234  CYS A 239 -1  N  CYS A 239   O  ARG A 253           
SHEET    5   B 5 ILE A 224  LYS A 230 -1  N  SER A 229   O  MET A 236           
SHEET    1   C 2 PHE A 291  ILE A 293  0                                        
SHEET    2   C 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O3'  DC T   5                 P   6OG T   6     1555   1555  1.61  
LINK        MN    MN A 401                 O1A 0KX A 405     1555   1555  1.74  
LINK         OD1 ASP A 190                MN    MN A 401     1555   1555  2.12  
LINK        MN    MN A 401                 O   HOH A 507     1555   1555  2.27  
LINK         OD2 ASP A 192                MN    MN A 401     1555   1555  2.34  
LINK         O   THR A 101                NA    NA A 404     1555   1555  2.38  
LINK         OP1  DG P   9                NA    NA A 404     1555   1555  2.38  
LINK         O   ILE A 106                NA    NA A 404     1555   1555  2.38  
LINK         O   VAL A 103                NA    NA A 404     1555   1555  2.40  
LINK         OD1 ASP A 192                MN    MN A 402     1555   1555  2.51  
LINK        NA    NA A 404                 O   HOH P 103     1555   1555  2.54  
LINK        MN    MN A 402                 O   HOH A 584     1555   1555  2.55  
LINK        NA    NA A 403                 O   HOH P 103     1555   1555  2.55  
LINK         O   THR A 101                NA    NA A 403     1555   1555  2.55  
LINK        MN    MN A 401                 O3G 0KX A 405     1555   1555  2.58  
LINK        MN    MN A 401                 O2B 0KX A 405     1555   1555  2.64  
LINK        MN    MN A 402                 O1A 0KX A 405     1555   1555  2.68  
LINK         OD2 ASP A 190                MN    MN A 402     1555   1555  2.72  
LINK        NA    NA A 404                 O   HOH P 101     1555   1555  2.78  
LINK        NA    NA A 403                 O   HOH P 101     1555   1555  2.87  
LINK         O3' 6OG T   6                 P    DT T   7     1555   1555  1.61  
CISPEP   1 GLY A  274    SER A  275          0         2.80                     
SITE     1 AC1  5 ASP A 190  ASP A 192   MN A 402  0KX A 405                    
SITE     2 AC1  5 HOH A 507                                                     
SITE     1 AC2  6 ASP A 190  ASP A 192   MN A 401  0KX A 405                    
SITE     2 AC2  6 HOH A 584   DA P  10                                          
SITE     1 AC3  4 THR A 101   NA A 404  HOH P 101  HOH P 103                    
SITE     1 AC4  7 THR A 101  VAL A 103  ILE A 106   NA A 403                    
SITE     2 AC4  7  DG P   9  HOH P 101  HOH P 103                               
SITE     1 AC5 16 ARG A 149  GLY A 179  SER A 180  ARG A 183                    
SITE     2 AC5 16 GLY A 189  ASP A 190  ASP A 192  TYR A 271                    
SITE     3 AC5 16 GLY A 274  SER A 275  ASP A 276  ASN A 279                    
SITE     4 AC5 16  MN A 401   MN A 402  HOH A 507  HOH A 553                    
CRYST1   54.625   79.288   54.838  90.00 105.97  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.018307  0.000000  0.005239        0.00000                         
SCALE2      0.000000  0.012612  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018968        0.00000