PDB Short entry for 4O1L HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-DEC-13 4O1L TITLE HUMAN ADENOSINE KINASE IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 17-362; COMPND 5 SYNONYM: AK, ADENOSINE 5'-PHOSPHOTRANSFERASE; COMPND 6 EC: 2.7.1.20; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOSINE KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.BRYNDA,J.DOSTAL,I.PICHOVA,M.HODCEK REVDAT 2 20-MAR-24 4O1L 1 REMARK LINK REVDAT 1 26-NOV-14 4O1L 0 JRNL AUTH J.SNASEL,P.NAUS,J.DOSTAL,A.HNIZDA,J.FANFRLIK,J.BRYNDA, JRNL AUTH 2 A.BOURDERIOUX,M.DUSEK,H.DVORAKOVA,J.STOLARIKOVA,H.ZABRANSKA, JRNL AUTH 3 R.POHL,P.KONECNY,P.DZUBAK,I.VOTRUBA,M.HAJDUCH,P.REZACOVA, JRNL AUTH 4 V.VEVERKA,M.HOCEK,I.PICHOVA JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF MYCOBACTERIAL AND HUMAN JRNL TITL 2 ADENOSINE KINASE BY 7-SUBSTITUTED 7-(HET)ARYL-7-DEAZAADENINE JRNL TITL 3 RIBONUCLEOSIDES JRNL REF J.MED.CHEM. V. 57 8268 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25259627 JRNL DOI 10.1021/JM500497V REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 156.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1128 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.46000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.615 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5384 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3630 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7270 ; 1.658 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8884 ; 1.303 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 661 ; 6.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;41.451 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 948 ;18.044 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 811 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5939 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1067 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 330 B 4 330 11549 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4O1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000083926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91502 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 156.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : 0.26200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.65500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 PRO A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 291 REMARK 465 ILE A 292 REMARK 465 ARG A 332 REMARK 465 ARG A 333 REMARK 465 THR A 334 REMARK 465 GLY A 335 REMARK 465 CYS A 336 REMARK 465 THR A 337 REMARK 465 PHE A 338 REMARK 465 PRO A 339 REMARK 465 GLU A 340 REMARK 465 LYS A 341 REMARK 465 PRO A 342 REMARK 465 ASP A 343 REMARK 465 PHE A 344 REMARK 465 HIS A 345 REMARK 465 ASP B 286 REMARK 465 GLN B 287 REMARK 465 ASP B 288 REMARK 465 GLN B 289 REMARK 465 LYS B 290 REMARK 465 GLU B 291 REMARK 465 ILE B 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 289 CG CD OE1 NE2 REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 PRO B 1 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 209 O HOH B 510 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 75 CE2 TRP A 75 CD2 0.079 REMARK 500 HIS A 81 CG HIS A 81 CD2 0.055 REMARK 500 HIS B 107 CG HIS B 107 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 1 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 78 -55.42 70.98 REMARK 500 ALA A 139 -118.14 53.16 REMARK 500 HIS A 149 -65.04 -148.35 REMARK 500 ASN A 190 51.75 38.56 REMARK 500 SER A 198 -50.10 72.52 REMARK 500 GLU A 237 -57.65 76.22 REMARK 500 PRO A 252 137.83 -39.96 REMARK 500 GLN A 266 26.69 -144.90 REMARK 500 GLN B 78 -55.82 73.12 REMARK 500 ALA B 139 -119.49 51.28 REMARK 500 HIS B 149 -60.52 -148.39 REMARK 500 ASN B 190 53.02 39.02 REMARK 500 SER B 198 -52.94 73.42 REMARK 500 GLN B 266 29.67 -141.45 REMARK 500 CYS B 336 51.38 -104.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 506 O REMARK 620 2 HOH A 507 O 102.8 REMARK 620 3 HOH A 508 O 153.5 80.1 REMARK 620 4 HOH A 509 O 86.0 161.5 84.9 REMARK 620 5 HOH A 510 O 90.2 86.6 63.4 76.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 504 O REMARK 620 2 HOH B 505 O 148.5 REMARK 620 3 HOH B 506 O 70.4 78.8 REMARK 620 4 HOH B 507 O 90.0 73.5 70.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PVV RELATED DB: PDB DBREF 4O1L A 0 345 UNP P55263 ADK_HUMAN 17 362 DBREF 4O1L B 0 345 UNP P55263 ADK_HUMAN 17 362 SEQRES 1 A 346 ALA PRO GLN ALA LEU ARG GLU ASN ILE LEU PHE GLY MET SEQRES 2 A 346 GLY ASN PRO LEU LEU ASP ILE SER ALA VAL VAL ASP LYS SEQRES 3 A 346 ASP PHE LEU ASP LYS TYR SER LEU LYS PRO ASN ASP GLN SEQRES 4 A 346 ILE LEU ALA GLU ASP LYS HIS LYS GLU LEU PHE ASP GLU SEQRES 5 A 346 LEU VAL LYS LYS PHE LYS VAL GLU TYR HIS ALA GLY GLY SEQRES 6 A 346 SER THR GLN ASN SER ILE LYS VAL ALA GLN TRP MET ILE SEQRES 7 A 346 GLN GLN PRO HIS LYS ALA ALA THR PHE PHE GLY CYS ILE SEQRES 8 A 346 GLY ILE ASP LYS PHE GLY GLU ILE LEU LYS ARG LYS ALA SEQRES 9 A 346 ALA GLU ALA HIS VAL ASP ALA HIS TYR TYR GLU GLN ASN SEQRES 10 A 346 GLU GLN PRO THR GLY THR CYS ALA ALA CYS ILE THR GLY SEQRES 11 A 346 ASP ASN ARG SER LEU ILE ALA ASN LEU ALA ALA ALA ASN SEQRES 12 A 346 CYS TYR LYS LYS GLU LYS HIS LEU ASP LEU GLU LYS ASN SEQRES 13 A 346 TRP MET LEU VAL GLU LYS ALA ARG VAL CYS TYR ILE ALA SEQRES 14 A 346 GLY PHE PHE LEU THR VAL SER PRO GLU SER VAL LEU LYS SEQRES 15 A 346 VAL ALA HIS HIS ALA SER GLU ASN ASN ARG ILE PHE THR SEQRES 16 A 346 LEU ASN LEU SER ALA PRO PHE ILE SER GLN PHE TYR LYS SEQRES 17 A 346 GLU SER LEU MET LYS VAL MET PRO TYR VAL ASP ILE LEU SEQRES 18 A 346 PHE GLY ASN GLU THR GLU ALA ALA THR PHE ALA ARG GLU SEQRES 19 A 346 GLN GLY PHE GLU THR LYS ASP ILE LYS GLU ILE ALA LYS SEQRES 20 A 346 LYS THR GLN ALA LEU PRO LYS MET ASN SER LYS ARG GLN SEQRES 21 A 346 ARG ILE VAL ILE PHE THR GLN GLY ARG ASP ASP THR ILE SEQRES 22 A 346 MET ALA THR GLU SER GLU VAL THR ALA PHE ALA VAL LEU SEQRES 23 A 346 ASP GLN ASP GLN LYS GLU ILE ILE ASP THR ASN GLY ALA SEQRES 24 A 346 GLY ASP ALA PHE VAL GLY GLY PHE LEU SER GLN LEU VAL SEQRES 25 A 346 SER ASP LYS PRO LEU THR GLU CYS ILE ARG ALA GLY HIS SEQRES 26 A 346 TYR ALA ALA SER ILE ILE ILE ARG ARG THR GLY CYS THR SEQRES 27 A 346 PHE PRO GLU LYS PRO ASP PHE HIS SEQRES 1 B 346 ALA PRO GLN ALA LEU ARG GLU ASN ILE LEU PHE GLY MET SEQRES 2 B 346 GLY ASN PRO LEU LEU ASP ILE SER ALA VAL VAL ASP LYS SEQRES 3 B 346 ASP PHE LEU ASP LYS TYR SER LEU LYS PRO ASN ASP GLN SEQRES 4 B 346 ILE LEU ALA GLU ASP LYS HIS LYS GLU LEU PHE ASP GLU SEQRES 5 B 346 LEU VAL LYS LYS PHE LYS VAL GLU TYR HIS ALA GLY GLY SEQRES 6 B 346 SER THR GLN ASN SER ILE LYS VAL ALA GLN TRP MET ILE SEQRES 7 B 346 GLN GLN PRO HIS LYS ALA ALA THR PHE PHE GLY CYS ILE SEQRES 8 B 346 GLY ILE ASP LYS PHE GLY GLU ILE LEU LYS ARG LYS ALA SEQRES 9 B 346 ALA GLU ALA HIS VAL ASP ALA HIS TYR TYR GLU GLN ASN SEQRES 10 B 346 GLU GLN PRO THR GLY THR CYS ALA ALA CYS ILE THR GLY SEQRES 11 B 346 ASP ASN ARG SER LEU ILE ALA ASN LEU ALA ALA ALA ASN SEQRES 12 B 346 CYS TYR LYS LYS GLU LYS HIS LEU ASP LEU GLU LYS ASN SEQRES 13 B 346 TRP MET LEU VAL GLU LYS ALA ARG VAL CYS TYR ILE ALA SEQRES 14 B 346 GLY PHE PHE LEU THR VAL SER PRO GLU SER VAL LEU LYS SEQRES 15 B 346 VAL ALA HIS HIS ALA SER GLU ASN ASN ARG ILE PHE THR SEQRES 16 B 346 LEU ASN LEU SER ALA PRO PHE ILE SER GLN PHE TYR LYS SEQRES 17 B 346 GLU SER LEU MET LYS VAL MET PRO TYR VAL ASP ILE LEU SEQRES 18 B 346 PHE GLY ASN GLU THR GLU ALA ALA THR PHE ALA ARG GLU SEQRES 19 B 346 GLN GLY PHE GLU THR LYS ASP ILE LYS GLU ILE ALA LYS SEQRES 20 B 346 LYS THR GLN ALA LEU PRO LYS MET ASN SER LYS ARG GLN SEQRES 21 B 346 ARG ILE VAL ILE PHE THR GLN GLY ARG ASP ASP THR ILE SEQRES 22 B 346 MET ALA THR GLU SER GLU VAL THR ALA PHE ALA VAL LEU SEQRES 23 B 346 ASP GLN ASP GLN LYS GLU ILE ILE ASP THR ASN GLY ALA SEQRES 24 B 346 GLY ASP ALA PHE VAL GLY GLY PHE LEU SER GLN LEU VAL SEQRES 25 B 346 SER ASP LYS PRO LEU THR GLU CYS ILE ARG ALA GLY HIS SEQRES 26 B 346 TYR ALA ALA SER ILE ILE ILE ARG ARG THR GLY CYS THR SEQRES 27 B 346 PHE PRO GLU LYS PRO ASP PHE HIS HET MG A 401 1 HET MG A 402 1 HET HO4 A 403 21 HET HO4 A 404 21 HET MG B 401 1 HET MG B 402 1 HET HO4 B 403 21 HETNAM MG MAGNESIUM ION HETNAM HO4 5-ETHYNYL-7-(BETA-D-RIBOFURANOSYL)-7H-PYRROLO[2,3- HETNAM 2 HO4 D]PYRIMIDIN-4-AMINE FORMUL 3 MG 4(MG 2+) FORMUL 5 HO4 3(C13 H14 N4 O4) FORMUL 10 HOH *41(H2 O) HELIX 1 1 ASP A 24 TYR A 31 1 8 HELIX 2 2 GLU A 42 LYS A 46 5 5 HELIX 3 3 GLU A 47 PHE A 56 1 10 HELIX 4 4 GLY A 64 GLN A 78 1 15 HELIX 5 5 ASP A 93 ALA A 106 1 14 HELIX 6 6 LEU A 138 TYR A 144 5 7 HELIX 7 7 LYS A 145 HIS A 149 5 5 HELIX 8 8 LEU A 152 LYS A 161 1 10 HELIX 9 9 PHE A 170 VAL A 174 5 5 HELIX 10 10 SER A 175 ASN A 189 1 15 HELIX 11 11 ALA A 199 TYR A 206 1 8 HELIX 12 12 TYR A 206 MET A 214 1 9 HELIX 13 13 PRO A 215 VAL A 217 5 3 HELIX 14 14 GLU A 224 GLN A 234 1 11 HELIX 15 15 ASP A 240 ALA A 250 1 11 HELIX 16 16 ASP A 294 VAL A 311 1 18 HELIX 17 17 PRO A 315 ILE A 331 1 17 HELIX 18 18 ASP B 24 TYR B 31 1 8 HELIX 19 19 GLU B 42 LYS B 44 5 3 HELIX 20 20 HIS B 45 PHE B 56 1 12 HELIX 21 21 GLY B 64 GLN B 78 1 15 HELIX 22 22 ASP B 93 ALA B 106 1 14 HELIX 23 23 LEU B 138 TYR B 144 5 7 HELIX 24 24 LYS B 145 HIS B 149 5 5 HELIX 25 25 LEU B 152 LYS B 161 1 10 HELIX 26 26 PHE B 170 VAL B 174 5 5 HELIX 27 27 SER B 175 ASN B 189 1 15 HELIX 28 28 ALA B 199 TYR B 206 1 8 HELIX 29 29 TYR B 206 MET B 214 1 9 HELIX 30 30 PRO B 215 VAL B 217 5 3 HELIX 31 31 ASN B 223 GLN B 234 1 12 HELIX 32 32 ASP B 240 ALA B 250 1 11 HELIX 33 33 ASP B 294 VAL B 311 1 18 HELIX 34 34 PRO B 315 ARG B 333 1 19 SHEET 1 A 9 ASP A 109 GLN A 115 0 SHEET 2 A 9 ALA A 84 GLY A 91 1 N PHE A 86 O HIS A 111 SHEET 3 A 9 LEU A 9 MET A 12 1 N LEU A 9 O THR A 85 SHEET 4 A 9 VAL A 164 ALA A 168 1 O TYR A 166 N PHE A 10 SHEET 5 A 9 ILE A 192 ASN A 196 1 O ILE A 192 N CYS A 165 SHEET 6 A 9 ILE A 219 ASN A 223 1 O PHE A 221 N LEU A 195 SHEET 7 A 9 ILE A 261 GLN A 266 1 O ILE A 263 N LEU A 220 SHEET 8 A 9 ASP A 269 ALA A 274 -1 O ILE A 272 N PHE A 264 SHEET 9 A 9 VAL A 279 PHE A 282 -1 O PHE A 282 N THR A 271 SHEET 1 B 5 ASP A 37 LEU A 40 0 SHEET 2 B 5 ASN A 131 ASN A 137 1 O ALA A 136 N ILE A 39 SHEET 3 B 5 GLY A 121 THR A 128 -1 N THR A 122 O ASN A 137 SHEET 4 B 5 LEU A 16 VAL A 22 1 N ALA A 21 O ILE A 127 SHEET 5 B 5 GLU A 59 GLY A 63 -1 O GLY A 63 N LEU A 16 SHEET 1 C 9 ASP B 109 GLN B 115 0 SHEET 2 C 9 ALA B 84 GLY B 91 1 N GLY B 88 O TYR B 113 SHEET 3 C 9 LEU B 9 MET B 12 1 N LEU B 9 O THR B 85 SHEET 4 C 9 VAL B 164 ALA B 168 1 O TYR B 166 N PHE B 10 SHEET 5 C 9 ILE B 192 ASN B 196 1 O ILE B 192 N CYS B 165 SHEET 6 C 9 ILE B 219 GLY B 222 1 O PHE B 221 N LEU B 195 SHEET 7 C 9 ILE B 261 GLN B 266 1 O ILE B 263 N LEU B 220 SHEET 8 C 9 ASP B 269 ALA B 274 -1 O ILE B 272 N PHE B 264 SHEET 9 C 9 VAL B 279 PHE B 282 -1 O PHE B 282 N THR B 271 SHEET 1 D 5 ASP B 37 LEU B 40 0 SHEET 2 D 5 ASN B 131 ASN B 137 1 O ALA B 136 N ILE B 39 SHEET 3 D 5 GLY B 121 THR B 128 -1 N THR B 122 O ASN B 137 SHEET 4 D 5 LEU B 16 VAL B 22 1 N ALA B 21 O ILE B 127 SHEET 5 D 5 GLU B 59 GLY B 63 -1 O GLY B 63 N LEU B 16 LINK OG1 THR A 66 MG MG A 401 1555 1555 2.89 LINK MG MG A 402 O HOH A 506 1555 1555 1.96 LINK MG MG A 402 O HOH A 507 1555 1555 2.10 LINK MG MG A 402 O HOH A 508 1555 1555 2.13 LINK MG MG A 402 O HOH A 509 1555 1555 2.17 LINK MG MG A 402 O HOH A 510 1555 1555 2.22 LINK OG1 THR B 66 MG MG B 401 1555 1555 2.99 LINK MG MG B 402 O HOH B 504 1555 1555 2.06 LINK MG MG B 402 O HOH B 505 1555 1555 2.50 LINK MG MG B 402 O HOH B 506 1555 1555 2.42 LINK MG MG B 402 O HOH B 507 1555 1555 2.26 CISPEP 1 GLN A 79 PRO A 80 0 0.96 CISPEP 2 GLN B 79 PRO B 80 0 5.67 SITE 1 AC1 4 GLY A 13 ASN A 14 THR A 66 HO4 A 403 SITE 1 AC2 5 HOH A 506 HOH A 507 HOH A 508 HOH A 509 SITE 2 AC2 5 HOH A 510 SITE 1 AC3 15 ASN A 14 LEU A 16 ASP A 18 ILE A 39 SITE 2 AC3 15 LEU A 40 GLY A 63 GLY A 64 SER A 65 SITE 3 AC3 15 ASN A 68 PHE A 170 ASN A 296 GLY A 297 SITE 4 AC3 15 ASP A 300 MG A 401 HOH A 501 SITE 1 AC4 12 THR A 265 GLY A 267 ARG A 268 VAL A 284 SITE 2 AC4 12 ASP A 286 GLN A 287 ALA A 298 GLY A 299 SITE 3 AC4 12 HIS A 324 ALA A 327 ILE A 331 HOH A 505 SITE 1 AC5 4 ASN B 14 THR B 66 ALA B 168 HO4 B 403 SITE 1 AC6 4 HOH B 504 HOH B 505 HOH B 506 HOH B 507 SITE 1 AC7 15 ASN B 14 LEU B 16 ASP B 18 ILE B 39 SITE 2 AC7 15 GLY B 63 GLY B 64 SER B 65 ASN B 68 SITE 3 AC7 15 ALA B 136 PHE B 170 ASN B 296 GLY B 297 SITE 4 AC7 15 ASP B 300 MG B 401 HOH B 508 CRYST1 67.310 156.590 58.210 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017179 0.00000