PDB Short entry for 4O3S
HEADER    TRANSFERASE/DNA                         18-DEC-13   4O3S              
TITLE     CRYSTAL STRUCTURE OF HUMAN POLYMERASE ETA EXTENDING AN 8-OXOG DNA     
TITLE    2 LESION: POST INSERTION OF 8-OXOG-DC PAIR                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE ETA;                                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: RAD30 HOMOLOG A, XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN;
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: DNA (5'-D(*CP*AP*TP*GP*(8OG)P*TP*GP*AP*CP*GP*CP*T)-3');    
COMPND   9 CHAIN: T;                                                            
COMPND  10 ENGINEERED: YES;                                                     
COMPND  11 OTHER_DETAILS: NUCLEIC ACIDS TEMPLATE: CAT G(8OG)T GAC GCT;          
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*C)-3');                    
COMPND  14 CHAIN: P;                                                            
COMPND  15 ENGINEERED: YES;                                                     
COMPND  16 OTHER_DETAILS: NUCLEIC ACIDS PRIMAR: AGCGTCAC                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLH, RAD30, RAD30A, XPV;                                      
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 OTHER_DETAILS: CHEMICALLY SYNTHESIZED;                               
SOURCE  11 MOL_ID: 3;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED                                
KEYWDS    CATALYTIC DOMAIN, DNA, DNA DAMAGE, DNA-DIRECTED DNA POLYMERASE,       
KEYWDS   2 CYTOSINE TRIPHOSPHATE, Y-FAMILY POLYMERASE, TRANS-LESION SYNTHESIS   
KEYWDS   3 (TLS), DNA BINDING, 8-OXOG LESION BYPASS, TRANSFERASE-DNA COMPLEX    
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.PATRA,M.EGLI                                                        
REVDAT   3   20-SEP-23 4O3S    1       REMARK LINK                              
REVDAT   2   02-JUL-14 4O3S    1       JRNL                                     
REVDAT   1   30-APR-14 4O3S    0                                                
JRNL        AUTH   A.PATRA,L.D.NAGY,Q.ZHANG,Y.SU,L.MULLER,F.P.GUENGERICH,M.EGLI 
JRNL        TITL   KINETICS, STRUCTURE, AND MECHANISM OF                        
JRNL        TITL 2 8-OXO-7,8-DIHYDRO-2'-DEOXYGUANOSINE BYPASS BY HUMAN DNA      
JRNL        TITL 3 POLYMERASE ETA                                               
JRNL        REF    J.BIOL.CHEM.                  V. 289 16867 2014              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   24759104                                                     
JRNL        DOI    10.1074/JBC.M114.551820                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.72 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: DEV_1551)                     
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 42.57                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.350                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 47707                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.174                           
REMARK   3   R VALUE            (WORKING SET) : 0.172                           
REMARK   3   FREE R VALUE                     : 0.210                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.060                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2412                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 42.5834 -  4.4132    0.99     2701   158  0.1772 0.1997        
REMARK   3     2  4.4132 -  3.5034    1.00     2687   150  0.1429 0.1810        
REMARK   3     3  3.5034 -  3.0607    1.00     2687   140  0.1576 0.1903        
REMARK   3     4  3.0607 -  2.7809    1.00     2689   129  0.1764 0.1980        
REMARK   3     5  2.7809 -  2.5816    1.00     2670   154  0.1753 0.2237        
REMARK   3     6  2.5816 -  2.4294    1.00     2679   136  0.1821 0.2099        
REMARK   3     7  2.4294 -  2.3078    1.00     2677   139  0.1698 0.2214        
REMARK   3     8  2.3078 -  2.2073    1.00     2660   136  0.1662 0.1929        
REMARK   3     9  2.2073 -  2.1224    1.00     2649   156  0.1763 0.2072        
REMARK   3    10  2.1224 -  2.0491    1.00     2655   120  0.1779 0.2329        
REMARK   3    11  2.0491 -  1.9850    1.00     2672   139  0.1848 0.2785        
REMARK   3    12  1.9850 -  1.9283    1.00     2665   130  0.1864 0.2171        
REMARK   3    13  1.9283 -  1.8775    1.00     2656   152  0.1887 0.2569        
REMARK   3    14  1.8775 -  1.8317    1.00     2619   144  0.1924 0.2536        
REMARK   3    15  1.8317 -  1.7901    1.00     2652   155  0.2060 0.2905        
REMARK   3    16  1.7901 -  1.7520    0.99     2648   144  0.2226 0.2603        
REMARK   3    17  1.7520 -  1.7169    0.99     2629   130  0.2318 0.2988        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.190            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.740           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.007           3935                                  
REMARK   3   ANGLE     :  1.163           5412                                  
REMARK   3   CHIRALITY :  0.046            606                                  
REMARK   3   PLANARITY :  0.005            625                                  
REMARK   3   DIHEDRAL  : 19.679           1536                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4O3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000084005.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 21-JUL-13                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 21-ID-F                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97872                            
REMARK 200  MONOCHROMATOR                  : SI(111)                            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 47707                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.720                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 7.200                              
REMARK 200  R MERGE                    (I) : 0.06000                            
REMARK 200  R SYM                      (I) : 0.06000                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 31.2550                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.75                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.60                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.75700                            
REMARK 200  R SYM FOR SHELL            (I) : 0.75700                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.622                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER (MR)                                           
REMARK 200 STARTING MODEL: PDB ENTRY 4ECQ                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 41.18                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 5.5, 5MM MAGNESIUM          
REMARK 280  CHLORIDE, 17% PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP,          
REMARK 280  TEMPERATURE 291.0K                                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       27.19867            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       54.39733            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       40.79800            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       67.99667            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       13.59933            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 21370 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     THR A   155                                                      
REMARK 465     THR A   156                                                      
REMARK 465     ALA A   157                                                      
REMARK 465     GLU A   158                                                      
REMARK 465     GLU A   159                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470      DC T   1    O5'  C5'  C4'  O4'  C3'  C2'  C1'                   
REMARK 470      DC T   1    N1   C2   O2   N3   C4   N4   C5                    
REMARK 470      DC T   1    C6                                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A   683     O    HOH A   962              2.04            
REMARK 500   O    HOH T   129     O    HOH T   130              2.09            
REMARK 500   O    HOH A   964     O    HOH A   991              2.10            
REMARK 500   O    HOH A   707     O    HOH A   779              2.11            
REMARK 500   O    HOH A   674     O    HOH A   828              2.12            
REMARK 500   O    HOH T   130     O    HOH T   134              2.14            
REMARK 500   O    HOH A   898     O    HOH A   990              2.15            
REMARK 500   O    HOH A   664     O    HOH A   745              2.15            
REMARK 500   O    HOH A   901     O    HOH A   978              2.15            
REMARK 500   O    HOH A   873     O    HOH A   895              2.17            
REMARK 500   O    HOH A   903     O    HOH T   128              2.18            
REMARK 500   O    HOH A   942     O    HOH A   992              2.19            
REMARK 500   O    HOH A   727     O    HOH A   787              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A   889     O    HOH T   133     5344     2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DT T   6   O3'    DT T   6   C3'    -0.046                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DG T   7   O4' -  C1' -  N9  ANGL. DEV. =   2.6 DEGREES          
REMARK 500     DA P   7   O4' -  C1' -  N9  ANGL. DEV. =   1.8 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    CYS A  16       65.39     20.06                                   
REMARK 500    TYR A  39       85.53     69.34                                   
REMARK 500    GLN A 135       99.05     47.85                                   
REMARK 500    SER A 217     -157.98   -155.37                                   
REMARK 500    SER A 257      -10.29     93.82                                   
REMARK 500    ASN A 407       93.42    -66.54                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 502  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD2                                                    
REMARK 620 2 MET A  14   O    78.5                                              
REMARK 620 3 ASP A 115   OD2 102.7  85.0                                        
REMARK 620 4 0KX A 501   O1B 160.6  88.9  90.7                                  
REMARK 620 5 0KX A 501   O2A 107.8 173.6  92.2  85.3                            
REMARK 620 6 0KX A 501   O1G  82.6  92.1 173.3  83.1  90.1                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 503  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD1                                                    
REMARK 620 2 ASP A 115   OD1 101.3                                              
REMARK 620 3 GLU A 116   OE2  81.3 129.4                                        
REMARK 620 4 0KX A 501   O2A 101.2  93.6 135.9                                  
REMARK 620 5 HOH A 668   O    81.3 168.8  61.6  75.2                            
REMARK 620 6  DC P   8   O3' 169.5  84.1  88.3  87.4  95.2                      
REMARK 620 7  DC P   8   O3' 163.5  73.0  90.4  94.7 107.4  13.0                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0KX A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4O3N   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4O3O   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4O3P   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4O3Q   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4O3R   RELATED DB: PDB                                   
DBREF  4O3S A    1   432  UNP    Q9Y253   POLH_HUMAN       1    432             
DBREF  4O3S T    1    12  PDB    4O3S     4O3S             1     12             
DBREF  4O3S P    1     8  PDB    4O3S     4O3S             1      8             
SEQRES   1 A  432  MET ALA THR GLY GLN ASP ARG VAL VAL ALA LEU VAL ASP          
SEQRES   2 A  432  MET ASP CYS PHE PHE VAL GLN VAL GLU GLN ARG GLN ASN          
SEQRES   3 A  432  PRO HIS LEU ARG ASN LYS PRO CYS ALA VAL VAL GLN TYR          
SEQRES   4 A  432  LYS SER TRP LYS GLY GLY GLY ILE ILE ALA VAL SER TYR          
SEQRES   5 A  432  GLU ALA ARG ALA PHE GLY VAL THR ARG SER MET TRP ALA          
SEQRES   6 A  432  ASP ASP ALA LYS LYS LEU CYS PRO ASP LEU LEU LEU ALA          
SEQRES   7 A  432  GLN VAL ARG GLU SER ARG GLY LYS ALA ASN LEU THR LYS          
SEQRES   8 A  432  TYR ARG GLU ALA SER VAL GLU VAL MET GLU ILE MET SER          
SEQRES   9 A  432  ARG PHE ALA VAL ILE GLU ARG ALA SER ILE ASP GLU ALA          
SEQRES  10 A  432  TYR VAL ASP LEU THR SER ALA VAL GLN GLU ARG LEU GLN          
SEQRES  11 A  432  LYS LEU GLN GLY GLN PRO ILE SER ALA ASP LEU LEU PRO          
SEQRES  12 A  432  SER THR TYR ILE GLU GLY LEU PRO GLN GLY PRO THR THR          
SEQRES  13 A  432  ALA GLU GLU THR VAL GLN LYS GLU GLY MET ARG LYS GLN          
SEQRES  14 A  432  GLY LEU PHE GLN TRP LEU ASP SER LEU GLN ILE ASP ASN          
SEQRES  15 A  432  LEU THR SER PRO ASP LEU GLN LEU THR VAL GLY ALA VAL          
SEQRES  16 A  432  ILE VAL GLU GLU MET ARG ALA ALA ILE GLU ARG GLU THR          
SEQRES  17 A  432  GLY PHE GLN CYS SER ALA GLY ILE SER HIS ASN LYS VAL          
SEQRES  18 A  432  LEU ALA LYS LEU ALA CYS GLY LEU ASN LYS PRO ASN ARG          
SEQRES  19 A  432  GLN THR LEU VAL SER HIS GLY SER VAL PRO GLN LEU PHE          
SEQRES  20 A  432  SER GLN MET PRO ILE ARG LYS ILE ARG SER LEU GLY GLY          
SEQRES  21 A  432  LYS LEU GLY ALA SER VAL ILE GLU ILE LEU GLY ILE GLU          
SEQRES  22 A  432  TYR MET GLY GLU LEU THR GLN PHE THR GLU SER GLN LEU          
SEQRES  23 A  432  GLN SER HIS PHE GLY GLU LYS ASN GLY SER TRP LEU TYR          
SEQRES  24 A  432  ALA MET CYS ARG GLY ILE GLU HIS ASP PRO VAL LYS PRO          
SEQRES  25 A  432  ARG GLN LEU PRO LYS THR ILE GLY CYS SER LYS ASN PHE          
SEQRES  26 A  432  PRO GLY LYS THR ALA LEU ALA THR ARG GLU GLN VAL GLN          
SEQRES  27 A  432  TRP TRP LEU LEU GLN LEU ALA GLN GLU LEU GLU GLU ARG          
SEQRES  28 A  432  LEU THR LYS ASP ARG ASN ASP ASN ASP ARG VAL ALA THR          
SEQRES  29 A  432  GLN LEU VAL VAL SER ILE ARG VAL GLN GLY ASP LYS ARG          
SEQRES  30 A  432  LEU SER SER LEU ARG ARG CYS CYS ALA LEU THR ARG TYR          
SEQRES  31 A  432  ASP ALA HIS LYS MET SER HIS ASP ALA PHE THR VAL ILE          
SEQRES  32 A  432  LYS ASN CYS ASN THR SER GLY ILE GLN THR GLU TRP SER          
SEQRES  33 A  432  PRO PRO LEU THR MET LEU PHE LEU CYS ALA THR LYS PHE          
SEQRES  34 A  432  SER ALA SER                                                  
SEQRES   1 T   12   DC  DA  DT  DG 8OG  DT  DG  DA  DC  DG  DC  DT              
SEQRES   1 P    8   DA  DG  DC  DG  DT  DC  DA  DC                              
MODRES 4O3S 8OG T    5   DG                                                     
HET    8OG  T   5      23                                                       
HET    0KX  A 501      28                                                       
HET     MG  A 502       1                                                       
HET     MG  A 503       1                                                       
HET    GOL  A 504       6                                                       
HETNAM     8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE                        
HETNAM     0KX 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)            
HETNAM   2 0KX  PHOSPHORYL]AMINO}PHOSPHORYL]CYTIDINE                            
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     GOL GLYCEROL                                                         
HETSYN     8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE            
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   2  8OG    C10 H14 N5 O8 P                                              
FORMUL   4  0KX    C9 H17 N4 O12 P3                                             
FORMUL   5   MG    2(MG 2+)                                                     
FORMUL   7  GOL    C3 H8 O3                                                     
FORMUL   8  HOH   *452(H2 O)                                                    
HELIX    1   1 CYS A   16  ASN A   26  1                                  11    
HELIX    2   2 PRO A   27  ARG A   30  5                                   4    
HELIX    3   3 SER A   51  ALA A   56  1                                   6    
HELIX    4   4 TRP A   64  CYS A   72  1                                   9    
HELIX    5   5 LEU A   89  ALA A  107  1                                  19    
HELIX    6   6 LEU A  121  LEU A  132  1                                  12    
HELIX    7   7 SER A  138  LEU A  142  5                                   5    
HELIX    8   8 GLN A  162  LEU A  178  1                                  17    
HELIX    9   9 SER A  185  GLY A  209  1                                  25    
HELIX   10  10 ASN A  219  ASN A  230  1                                  12    
HELIX   11  11 SER A  242  GLN A  249  1                                   8    
HELIX   12  12 MET A  250  ILE A  255  5                                   6    
HELIX   13  13 GLY A  260  GLY A  271  1                                  12    
HELIX   14  14 TYR A  274  PHE A  281  5                                   8    
HELIX   15  15 THR A  282  GLY A  291  1                                  10    
HELIX   16  16 GLY A  291  CYS A  302  1                                  12    
HELIX   17  17 PRO A  326  ALA A  330  5                                   5    
HELIX   18  18 ARG A  334  ASP A  360  1                                  27    
HELIX   19  19 ASP A  391  LYS A  404  1                                  14    
HELIX   20  20 ASN A  405  ASN A  407  5                                   3    
SHEET    1   A 6 ILE A 109  SER A 113  0                                        
SHEET    2   A 6 GLU A 116  ASP A 120 -1  O  TYR A 118   N  GLU A 110           
SHEET    3   A 6 VAL A   9  MET A  14 -1  N  VAL A  12   O  ALA A 117           
SHEET    4   A 6 CYS A 212  SER A 217 -1  O  SER A 217   N  VAL A   9           
SHEET    5   A 6 GLN A 235  LEU A 237  1  O  THR A 236   N  ILE A 216           
SHEET    6   A 6 THR A 145  ILE A 147  1  N  TYR A 146   O  LEU A 237           
SHEET    1   B 3 GLY A  46  VAL A  50  0                                        
SHEET    2   B 3 CYS A  34  GLN A  38 -1  N  VAL A  36   O  ILE A  48           
SHEET    3   B 3 LEU A  76  GLN A  79  1  O  ALA A  78   N  VAL A  37           
SHEET    1   C 2 GLU A  82  SER A  83  0                                        
SHEET    2   C 2 LYS A  86  ALA A  87 -1  O  LYS A  86   N  SER A  83           
SHEET    1   D 3 ILE A 319  ASN A 324  0                                        
SHEET    2   D 3 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3   D 3 LEU A 331  THR A 333 -1  N  ALA A 332   O  TRP A 415           
SHEET    1   E 4 ILE A 319  ASN A 324  0                                        
SHEET    2   E 4 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3   E 4 ARG A 361  VAL A 372 -1  N  VAL A 367   O  CYS A 425           
SHEET    4   E 4 LEU A 381  ALA A 386 -1  O  ARG A 383   N  VAL A 368           
LINK         O3'  DG T   4                 P   8OG T   5     1555   1555  1.61  
LINK         O3' 8OG T   5                 P    DT T   6     1555   1555  1.60  
LINK         OD2 ASP A  13                MG    MG A 502     1555   1555  2.07  
LINK         OD1 ASP A  13                MG    MG A 503     1555   1555  2.07  
LINK         O   MET A  14                MG    MG A 502     1555   1555  2.27  
LINK         OD2 ASP A 115                MG    MG A 502     1555   1555  2.18  
LINK         OD1 ASP A 115                MG    MG A 503     1555   1555  2.22  
LINK         OE2 GLU A 116                MG    MG A 503     1555   1555  2.20  
LINK         O1B 0KX A 501                MG    MG A 502     1555   1555  2.16  
LINK         O2A 0KX A 501                MG    MG A 502     1555   1555  2.21  
LINK         O1G 0KX A 501                MG    MG A 502     1555   1555  2.22  
LINK         O2A 0KX A 501                MG    MG A 503     1555   1555  2.35  
LINK        MG    MG A 503                 O   HOH A 668     1555   1555  2.29  
LINK        MG    MG A 503                 O3'B DC P   8     1555   1555  2.02  
LINK        MG    MG A 503                 O3'A DC P   8     1555   1555  2.68  
CISPEP   1 LEU A  150    PRO A  151          0         1.14                     
CISPEP   2 LYS A  231    PRO A  232          0         1.01                     
CISPEP   3 SER A  416    PRO A  417          0        -4.78                     
SITE     1 AC1 27 ASP A  13  MET A  14  ASP A  15  CYS A  16                    
SITE     2 AC1 27 PHE A  17  PHE A  18  ILE A  48  ALA A  49                    
SITE     3 AC1 27 TYR A  52  ARG A  55  ARG A  61  ASP A 115                    
SITE     4 AC1 27 LYS A 231   MG A 502   MG A 503  HOH A 617                    
SITE     5 AC1 27 HOH A 653  HOH A 668  HOH A 683  HOH A 704                    
SITE     6 AC1 27 HOH A 742  HOH A 942  HOH A 962   DC P   8                    
SITE     7 AC1 27 HOH P 105   DG T   4  8OG T   5                               
SITE     1 AC2  5 ASP A  13  MET A  14  ASP A 115  0KX A 501                    
SITE     2 AC2  5  MG A 503                                                     
SITE     1 AC3  7 ASP A  13  ASP A 115  GLU A 116  0KX A 501                    
SITE     2 AC3  7  MG A 502  HOH A 668   DC P   8                               
SITE     1 AC4  7 PRO A 244  PHE A 247  SER A 248  GLY A 276                    
SITE     2 AC4  7 GLU A 277  HOH A 603  HOH A 641                               
CRYST1   98.312   98.312   81.596  90.00  90.00 120.00 P 61          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010172  0.005873  0.000000        0.00000                         
SCALE2      0.000000  0.011745  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012256        0.00000