PDB Short entry for 4O65 HEADER OXIDOREDUCTASE 20-DEC-13 4O65 TITLE CRYSTAL STRUCTURE OF THE CUPREDOXIN DOMAIN OF AMOB FROM NITROSOCALDUS TITLE 2 YELLOWSTONII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ARCHAEAL AMMONIA MONOOXYGENASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS NITROSOCALDUS YELLOWSTONII; SOURCE 3 ORGANISM_TAXID: 498375; SOURCE 4 GENE: AMOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PASK-IBA2 KEYWDS CUPREDOXIN, AMMONIA MONOOXYGENASE, AMO, AMMONIA OXIDATION, AMMONIA, KEYWDS 2 MEMBRANE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.LAWTON,J.HAM,T.SUN,A.C.ROSENZWEIG REVDAT 2 03-SEP-14 4O65 1 JRNL REVDAT 1 02-APR-14 4O65 0 JRNL AUTH T.J.LAWTON,J.HAM,T.SUN,A.C.ROSENZWEIG JRNL TITL STRUCTURAL CONSERVATION OF THE B SUBUNIT IN THE AMMONIA JRNL TITL 2 MONOOXYGENASE/PARTICULATE METHANE MONOOXYGENASE SUPERFAMILY. JRNL REF PROTEINS V. 82 2263 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 24523098 JRNL DOI 10.1002/PROT.24535 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1292 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.041 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1225 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1665 ; 2.200 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 151 ; 6.454 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;39.015 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 199 ;13.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.670 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 185 ; 0.248 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 928 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 610 ; 1.554 ; 1.558 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 759 ; 2.355 ; 2.322 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 619 ; 3.401 ; 2.168 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1907 ; 8.645 ;16.031 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 194 REMARK 3 RESIDUE RANGE : A 201 A 204 REMARK 3 RESIDUE RANGE : A 301 A 465 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2447 -18.8341 12.8149 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.1005 REMARK 3 T33: 0.0614 T12: -0.0126 REMARK 3 T13: 0.0126 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.9114 L22: 0.1666 REMARK 3 L33: 0.4874 L12: 0.0668 REMARK 3 L13: 0.1915 L23: 0.2708 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.2046 S13: 0.0302 REMARK 3 S21: -0.0260 S22: 0.0141 S23: -0.0062 REMARK 3 S31: -0.0195 S32: -0.0141 S33: 0.0261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4O65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 22.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 7.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M NH4SO4, 100 MM SODIUM FORMATE PH REMARK 280 4.0, AND 2% POLYETHYLENE GLYCOL 8000, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.30700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.94300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.94300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 144.46050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.94300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.94300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.15350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.94300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.94300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 144.46050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.94300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.94300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.15350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.30700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 337 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 31 REMARK 465 GLY A 32 REMARK 465 VAL A 33 REMARK 465 GLN A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 113 REMARK 465 ALA A 114 REMARK 465 SER A 115 REMARK 465 ASN A 116 REMARK 465 ALA A 117 REMARK 465 GLY A 118 REMARK 465 GLU A 195 REMARK 465 LYS A 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 121 CE2 TRP A 121 CD2 0.074 REMARK 500 HIS A 156 CG HIS A 156 CD2 0.061 REMARK 500 HIS A 158 CG HIS A 158 CD2 0.069 REMARK 500 TRP A 189 CE2 TRP A 189 CD2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 166 -59.32 -121.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 112 14.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 388 DISTANCE = 8.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 156 ND1 REMARK 620 2 HIS A 158 NE2 113.2 REMARK 620 3 HOH A 465 O 139.3 107.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 DBREF 4O65 A 31 186 UNP B0LKZ4 B0LKZ4_9CREN 31 186 SEQADV 4O65 ALA A 114 UNP B0LKZ4 SER 114 CONFLICT SEQADV 4O65 ILE A 163 UNP B0LKZ4 VAL 163 CONFLICT SEQADV 4O65 SER A 187 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 ALA A 188 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 TRP A 189 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 SER A 190 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 HIS A 191 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 PRO A 192 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 GLN A 193 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 PHE A 194 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 GLU A 195 UNP B0LKZ4 EXPRESSION TAG SEQADV 4O65 LYS A 196 UNP B0LKZ4 EXPRESSION TAG SEQRES 1 A 166 HIS GLY VAL GLN ALA GLN LEU GLN SER ARG PHE VAL LYS SEQRES 2 A 166 ILE GLU ASP GLU THR PHE SER ALA THR ARG LEU ILE THR SEQRES 3 A 166 LYS ALA GLU PHE ALA LYS ARG THR PHE GLY ASN SER ASP SEQRES 4 A 166 LEU GLU THR LEU LYS GLN VAL ASP ALA MET GLY CYS ASP SEQRES 5 A 166 PRO ALA ARG ARG GLN ASP VAL LEU ILE VAL THR GLY ARG SEQRES 6 A 166 LEU VAL SER GLN VAL LYS GLN ASP LEU ASN ALA TRP ILE SEQRES 7 A 166 SER LEU PHE THR GLU ALA SER ASN ALA GLY ASN ARG TRP SEQRES 8 A 166 GLU PHE ILE SER ARG ASP PRO PRO GLY ASN VAL PHE THR SEQRES 9 A 166 ILE PRO GLY GLY GLY GLU VAL PRO TYR LYS LEU CYS LEU SEQRES 10 A 166 SER ALA LEU GLU PRO GLY THR TYR HIS ALA HIS THR GLN SEQRES 11 A 166 LEU ASN ILE ALA SER VAL GLY PRO GLY LEU GLY PRO GLY SEQRES 12 A 166 MET SER ILE VAL VAL GLU GLY GLU PRO THR GLU LYS PRO SEQRES 13 A 166 SER ALA TRP SER HIS PRO GLN PHE GLU LYS HET CU A 201 1 HET SO4 A 202 5 HET SO4 A 203 5 HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION FORMUL 2 CU CU 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *165(H2 O) HELIX 1 1 THR A 56 GLY A 66 1 11 HELIX 2 2 ASP A 69 ALA A 78 1 10 SHEET 1 A 4 VAL A 42 PHE A 49 0 SHEET 2 A 4 VAL A 89 SER A 98 -1 O ARG A 95 N GLU A 45 SHEET 3 A 4 GLU A 140 ALA A 149 -1 O LEU A 145 N VAL A 92 SHEET 4 A 4 TRP A 121 ASP A 127 -1 N ILE A 124 O CYS A 146 SHEET 1 B 5 ARG A 53 ILE A 55 0 SHEET 2 B 5 MET A 174 GLU A 179 1 O VAL A 177 N LEU A 54 SHEET 3 B 5 GLY A 153 ILE A 163 -1 N GLY A 153 O VAL A 178 SHEET 4 B 5 LEU A 104 PHE A 111 -1 N TRP A 107 O ASN A 162 SHEET 5 B 5 PHE A 133 ILE A 135 -1 O ILE A 135 N LEU A 104 SHEET 1 C 4 ARG A 53 ILE A 55 0 SHEET 2 C 4 MET A 174 GLU A 179 1 O VAL A 177 N LEU A 54 SHEET 3 C 4 GLY A 153 ILE A 163 -1 N GLY A 153 O VAL A 178 SHEET 4 C 4 GLY A 167 LEU A 170 -1 O GLY A 169 N LEU A 161 SSBOND 1 CYS A 81 CYS A 146 1555 1555 2.14 LINK ND1 HIS A 156 CU CU A 201 1555 1555 1.89 LINK NE2 HIS A 158 CU CU A 201 1555 1555 1.99 LINK CU CU A 201 O HOH A 465 1555 1555 2.09 CISPEP 1 ASP A 127 PRO A 128 0 -2.99 SITE 1 AC1 3 HIS A 156 HIS A 158 HOH A 465 SITE 1 AC2 5 ARG A 40 TRP A 107 ALA A 164 SER A 165 SITE 2 AC2 5 HOH A 442 SITE 1 AC3 5 SER A 165 SER A 187 ALA A 188 HIS A 191 SITE 2 AC3 5 HOH A 340 CRYST1 47.886 47.886 192.614 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005192 0.00000