PDB Short entry for 4OC6 HEADER HYDROLASE/HYDROLASE INHIBITOR 08-JAN-14 4OC6 TITLE STRUCTURE OF CATHEPSIN D WITH INHIBITOR 2-BROMO-N-[(2S,3S)-4-{[2-(2,4- TITLE 2 DICHLOROPHENYL)ETHYL][3-(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL) TITLE 3 PROPANOYL]AMINO}-3-HYDROXY-1-(3-PHENOXYPHENYL)BUTAN-2-YL]-4,5- TITLE 4 DIMETHOXYBENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN D LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.23.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CATHEPSIN D HEAVY CHAIN; COMPND 8 CHAIN: B; COMPND 9 EC: 3.4.23.5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSD, CPSD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CTSD, CPSD; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LYSOSOMAL ASPARTIC PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR U.GRAEDLER,P.CZODROWSKI,C.TSAKLAKIDIS,M.KLEIN,K.MASKOS,B.LEUTHNER REVDAT 3 29-JUL-20 4OC6 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 10-SEP-14 4OC6 1 JRNL REVDAT 1 13-AUG-14 4OC6 0 JRNL AUTH U.GRADLER,P.CZODROWSKI,C.TSAKLAKIDIS,M.KLEIN,D.WERKMANN, JRNL AUTH 2 S.LINDEMANN,K.MASKOS,B.LEUTHNER JRNL TITL STRUCTURE-BASED OPTIMIZATION OF NON-PEPTIDIC CATHEPSIN D JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 24 4141 2014 JRNL REFN ISSN 0960-894X JRNL PMID 25086681 JRNL DOI 10.1016/J.BMCL.2014.07.054 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 13628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.150 REMARK 3 FREE R VALUE TEST SET COUNT : 838 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.63 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2760 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2648 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2572 REMARK 3 BIN R VALUE (WORKING SET) : 0.2596 REMARK 3 BIN FREE R VALUE : 0.3324 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.81 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 188 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.07450 REMARK 3 B22 (A**2) : -2.07450 REMARK 3 B33 (A**2) : 4.14900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.530 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.566 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2823 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3843 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 957 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 60 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 404 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2823 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 369 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3094 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|97 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.0920 30.2840 20.4670 REMARK 3 T TENSOR REMARK 3 T11: -0.4594 T22: 0.0748 REMARK 3 T33: -0.2532 T12: -0.0806 REMARK 3 T13: -0.0266 T23: 0.1025 REMARK 3 L TENSOR REMARK 3 L11: 3.1277 L22: 3.2973 REMARK 3 L33: 5.7146 L12: -0.6773 REMARK 3 L13: 0.2782 L23: -0.6851 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: -0.4276 S13: -0.3723 REMARK 3 S21: 0.5664 S22: -0.3238 S23: 0.0289 REMARK 3 S31: 0.0776 S32: 0.2138 S33: 0.2068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|106 - B|346 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.4180 35.0890 0.5820 REMARK 3 T TENSOR REMARK 3 T11: -0.4584 T22: 0.2624 REMARK 3 T33: -0.1541 T12: 0.0201 REMARK 3 T13: -0.0052 T23: 0.0642 REMARK 3 L TENSOR REMARK 3 L11: 2.3056 L22: 2.5782 REMARK 3 L33: 4.3469 L12: -0.4197 REMARK 3 L13: 0.4160 L23: -0.2115 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.5348 S13: -0.1389 REMARK 3 S21: -0.2907 S22: -0.3887 S23: -0.1667 REMARK 3 S31: -0.1858 S32: 0.6522 S33: 0.3095 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13822 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 66.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : 0.94000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, PH 5.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.86200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 167.72400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.79300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 209.65500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.93100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.86200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 167.72400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 209.65500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 125.79300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.93100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -38.51100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 66.70301 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.93100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -4 REMARK 465 ALA A -3 REMARK 465 VAL A -2 REMARK 465 THR A -1 REMARK 465 GLU A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 11 22.75 49.14 REMARK 500 HIS A 45 43.40 -90.07 REMARK 500 ASN A 70 -77.54 -123.57 REMARK 500 PRO A 95 -166.07 -73.27 REMARK 500 THR B 201 -74.21 -76.13 REMARK 500 ALA B 204 -74.45 -134.12 REMARK 500 ILE B 257 150.18 176.76 REMARK 500 GLN B 296 138.24 -173.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LYA RELATED DB: PDB REMARK 900 RELATED ID: 4OBZ RELATED DB: PDB REMARK 900 RELATED ID: 4OD9 RELATED DB: PDB DBREF 4OC6 A -4 98 UNP P07339 CATD_HUMAN 60 162 DBREF 4OC6 B 106 348 UNP P07339 CATD_HUMAN 170 412 SEQRES 1 A 103 PRO ALA VAL THR GLU GLY PRO ILE PRO GLU VAL LEU LYS SEQRES 2 A 103 ASN TYR MET ASP ALA GLN TYR TYR GLY GLU ILE GLY ILE SEQRES 3 A 103 GLY THR PRO PRO GLN CYS PHE THR VAL VAL PHE ASP THR SEQRES 4 A 103 GLY SER SER ASN LEU TRP VAL PRO SER ILE HIS CYS LYS SEQRES 5 A 103 LEU LEU ASP ILE ALA CYS TRP ILE HIS HIS LYS TYR ASN SEQRES 6 A 103 SER ASP LYS SER SER THR TYR VAL LYS ASN GLY THR SER SEQRES 7 A 103 PHE ASP ILE HIS TYR GLY SER GLY SER LEU SER GLY TYR SEQRES 8 A 103 LEU SER GLN ASP THR VAL SER VAL PRO CYS GLN SER SEQRES 1 B 243 GLY GLY VAL LYS VAL GLU ARG GLN VAL PHE GLY GLU ALA SEQRES 2 B 243 THR LYS GLN PRO GLY ILE THR PHE ILE ALA ALA LYS PHE SEQRES 3 B 243 ASP GLY ILE LEU GLY MET ALA TYR PRO ARG ILE SER VAL SEQRES 4 B 243 ASN ASN VAL LEU PRO VAL PHE ASP ASN LEU MET GLN GLN SEQRES 5 B 243 LYS LEU VAL ASP GLN ASN ILE PHE SER PHE TYR LEU SER SEQRES 6 B 243 ARG ASP PRO ASP ALA GLN PRO GLY GLY GLU LEU MET LEU SEQRES 7 B 243 GLY GLY THR ASP SER LYS TYR TYR LYS GLY SER LEU SER SEQRES 8 B 243 TYR LEU ASN VAL THR ARG LYS ALA TYR TRP GLN VAL HIS SEQRES 9 B 243 LEU ASP GLN VAL GLU VAL ALA SER GLY LEU THR LEU CYS SEQRES 10 B 243 LYS GLU GLY CYS GLU ALA ILE VAL ASP THR GLY THR SER SEQRES 11 B 243 LEU MET VAL GLY PRO VAL ASP GLU VAL ARG GLU LEU GLN SEQRES 12 B 243 LYS ALA ILE GLY ALA VAL PRO LEU ILE GLN GLY GLU TYR SEQRES 13 B 243 MET ILE PRO CYS GLU LYS VAL SER THR LEU PRO ALA ILE SEQRES 14 B 243 THR LEU LYS LEU GLY GLY LYS GLY TYR LYS LEU SER PRO SEQRES 15 B 243 GLU ASP TYR THR LEU LYS VAL SER GLN ALA GLY LYS THR SEQRES 16 B 243 LEU CYS LEU SER GLY PHE MET GLY MET ASP ILE PRO PRO SEQRES 17 B 243 PRO SER GLY PRO LEU TRP ILE LEU GLY ASP VAL PHE ILE SEQRES 18 B 243 GLY ARG TYR TYR THR VAL PHE ASP ARG ASP ASN ASN ARG SEQRES 19 B 243 VAL GLY PHE ALA GLU ALA ALA ARG LEU MODRES 4OC6 ASN A 70 ASN GLYCOSYLATION SITE MODRES 4OC6 ASN B 199 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG B 401 14 HET 2S1 B 402 58 HET GOL B 403 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM 2S1 2-BROMO-N-[(2S,3S)-4-{[2-(2,4-DICHLOROPHENYL)ETHYL][3- HETNAM 2 2S1 (1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL) HETNAM 3 2S1 PROPANOYL]AMINO}-3-HYDROXY-1-(3-PHENOXYPHENYL)BUTAN-2- HETNAM 4 2S1 YL]-4,5-DIMETHOXYBENZAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 5 2S1 C44 H40 BR CL2 N3 O8 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *10(H2 O) HELIX 1 1 ASP A 50 HIS A 56 1 7 HELIX 2 2 ASN A 60 SER A 64 5 5 HELIX 3 3 ILE B 124 ALA B 129 1 6 HELIX 4 4 TYR B 139 VAL B 147 5 9 HELIX 5 5 PRO B 149 GLN B 157 1 9 HELIX 6 6 ASP B 187 TYR B 191 5 5 HELIX 7 7 PRO B 240 GLY B 252 1 13 HELIX 8 8 PRO B 264 SER B 269 1 6 HELIX 9 9 GLY B 322 ARG B 328 1 7 SHEET 1 A 9 VAL A 68 HIS A 77 0 SHEET 2 A 9 SER A 82 VAL A 94 -1 O GLN A 89 N VAL A 68 SHEET 3 A 9 GLN A 14 ILE A 21 -1 N GLY A 20 O SER A 93 SHEET 4 A 9 ILE A 3 TYR A 10 -1 N TYR A 10 O GLN A 14 SHEET 5 A 9 GLY B 179 LEU B 183 -1 O LEU B 181 N GLU A 5 SHEET 6 A 9 ILE B 164 LEU B 169 -1 N TYR B 168 O GLU B 180 SHEET 7 A 9 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 8 A 9 ARG B 339 GLU B 344 -1 O GLY B 341 N VAL B 332 SHEET 9 A 9 SER B 196 ASN B 199 -1 N LEU B 198 O VAL B 340 SHEET 1 B13 VAL A 68 HIS A 77 0 SHEET 2 B13 SER A 82 VAL A 94 -1 O GLN A 89 N VAL A 68 SHEET 3 B13 VAL B 108 LYS B 120 -1 O GLU B 117 N TYR A 86 SHEET 4 B13 LEU A 39 PRO A 42 1 N VAL A 41 O ALA B 118 SHEET 5 B13 GLY B 133 GLY B 136 -1 O ILE B 134 N TRP A 40 SHEET 6 B13 GLN A 26 ASP A 33 1 N VAL A 31 O LEU B 135 SHEET 7 B13 GLN A 14 ILE A 21 -1 N ILE A 19 O PHE A 28 SHEET 8 B13 ILE A 3 TYR A 10 -1 N TYR A 10 O GLN A 14 SHEET 9 B13 GLY B 179 LEU B 183 -1 O LEU B 181 N GLU A 5 SHEET 10 B13 ILE B 164 LEU B 169 -1 N TYR B 168 O GLU B 180 SHEET 11 B13 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 12 B13 ARG B 339 GLU B 344 -1 O GLY B 341 N VAL B 332 SHEET 13 B13 SER B 196 ASN B 199 -1 N LEU B 198 O VAL B 340 SHEET 1 C 3 GLN B 207 LEU B 210 0 SHEET 2 C 3 CYS B 226 VAL B 230 -1 O ALA B 228 N VAL B 208 SHEET 3 C 3 TRP B 319 LEU B 321 1 O LEU B 321 N ILE B 229 SHEET 1 D 4 THR B 220 LEU B 221 0 SHEET 2 D 4 GLN B 212 VAL B 215 -1 N VAL B 213 O LEU B 221 SHEET 3 D 4 ILE B 274 LEU B 278 -1 O THR B 275 N GLU B 214 SHEET 4 D 4 LYS B 281 LEU B 285 -1 O LEU B 285 N ILE B 274 SHEET 1 E 2 MET B 237 GLY B 239 0 SHEET 2 E 2 PHE B 306 GLY B 308 1 O MET B 307 N GLY B 239 SHEET 1 F 4 VAL B 254 PRO B 255 0 SHEET 2 F 4 TYR B 261 ILE B 263 -1 O MET B 262 N VAL B 254 SHEET 3 F 4 LYS B 299 SER B 304 -1 O CYS B 302 N ILE B 263 SHEET 4 F 4 THR B 291 GLN B 296 -1 N LEU B 292 O LEU B 303 SSBOND 1 CYS A 27 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 46 CYS A 53 1555 1555 2.04 SSBOND 3 CYS B 222 CYS B 226 1555 1555 2.04 SSBOND 4 CYS B 265 CYS B 302 1555 1555 2.05 LINK ND2 ASN A 70 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN B 199 C1 NAG B 401 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.42 CISPEP 1 THR A 23 PRO A 24 0 0.18 CISPEP 2 VAL A 94 PRO A 95 0 3.02 CISPEP 3 GLN B 176 PRO B 177 0 -5.26 CISPEP 4 PRO B 313 PRO B 314 0 2.72 CISPEP 5 GLY B 316 PRO B 317 0 0.66 CRYST1 77.022 77.022 251.586 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012983 0.007496 0.000000 0.00000 SCALE2 0.000000 0.014992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003975 0.00000