PDB Short entry for 4OD9 HEADER HYDROLASE/HYDROLASE INHIBITOR 10-JAN-14 4OD9 TITLE STRUCTURE OF CATHEPSIN D WITH INHIBITOR N-(3,4-DIMETHOXYBENZYL)- TITLE 2 NALPHA-{N-[(3,4-DIMETHOXYPHENYL)ACETYL]CARBAMIMIDOYL}-D- TITLE 3 PHENYLALANINAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN D LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 EC: 3.4.23.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CATHEPSIN D HEAVY CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 EC: 3.4.23.5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CPSD, CTSD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CPSD, CTSD; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LYSOSOMAL ASPARTIC PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR U.GRAEDLER,P.CZODROWSKI,C.TSAKLAKIDIS,M.KLEIN,K.MASKOS,B.LEUTHNER REVDAT 3 29-JUL-20 4OD9 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 10-SEP-14 4OD9 1 JRNL REVDAT 1 13-AUG-14 4OD9 0 JRNL AUTH U.GRADLER,P.CZODROWSKI,C.TSAKLAKIDIS,M.KLEIN,D.WERKMANN, JRNL AUTH 2 S.LINDEMANN,K.MASKOS,B.LEUTHNER JRNL TITL STRUCTURE-BASED OPTIMIZATION OF NON-PEPTIDIC CATHEPSIN D JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 24 4141 2014 JRNL REFN ISSN 0960-894X JRNL PMID 25086681 JRNL DOI 10.1016/J.BMCL.2014.07.054 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 58324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2916 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4154 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2010 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3946 REMARK 3 BIN R VALUE (WORKING SET) : 0.1988 REMARK 3 BIN FREE R VALUE : 0.2432 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 208 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.60610 REMARK 3 B22 (A**2) : -2.93510 REMARK 3 B33 (A**2) : 5.54120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.216 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.143 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5489 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7461 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1850 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 124 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 792 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5489 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 709 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6478 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|98 A|101 - A|102 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.7113 29.0127 -28.9750 REMARK 3 T TENSOR REMARK 3 T11: -0.0285 T22: -0.1365 REMARK 3 T33: 0.0643 T12: 0.0482 REMARK 3 T13: -0.0271 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.7840 L22: 1.0177 REMARK 3 L33: 2.0720 L12: -0.1547 REMARK 3 L13: 0.0347 L23: 0.5557 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: -0.1354 S13: 0.0565 REMARK 3 S21: 0.1150 S22: 0.0450 S23: -0.0381 REMARK 3 S31: -0.1249 S32: -0.0542 S33: 0.0494 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|107 - B|346 B|401 - B|401 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.6521 15.4450 -45.0868 REMARK 3 T TENSOR REMARK 3 T11: -0.0786 T22: -0.1167 REMARK 3 T33: 0.0391 T12: 0.0131 REMARK 3 T13: -0.0133 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.4974 L22: 1.2546 REMARK 3 L33: 0.9828 L12: -0.2668 REMARK 3 L13: 0.1864 L23: 0.3571 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0398 S13: -0.0054 REMARK 3 S21: -0.0704 S22: -0.0243 S23: 0.0626 REMARK 3 S31: -0.0414 S32: -0.0594 S33: 0.0238 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|2 - C|98 C|400 - C|401 } REMARK 3 ORIGIN FOR THE GROUP (A): -18.2861 -12.0239 -25.3560 REMARK 3 T TENSOR REMARK 3 T11: -0.0602 T22: -0.1268 REMARK 3 T33: 0.0642 T12: 0.0446 REMARK 3 T13: -0.0228 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.6329 L22: 1.7719 REMARK 3 L33: 1.6281 L12: -0.1872 REMARK 3 L13: 0.2031 L23: 0.0595 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: 0.0341 S13: -0.0885 REMARK 3 S21: -0.1904 S22: -0.0322 S23: 0.1092 REMARK 3 S31: 0.1290 S32: 0.0070 S33: -0.0553 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|106 - D|346 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.7368 -0.4428 -7.9056 REMARK 3 T TENSOR REMARK 3 T11: -0.1050 T22: -0.1269 REMARK 3 T33: 0.0602 T12: 0.0101 REMARK 3 T13: -0.0161 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.7378 L22: 1.1067 REMARK 3 L33: 0.9008 L12: -0.5095 REMARK 3 L13: -0.0335 L23: 0.3039 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.0816 S13: 0.0090 REMARK 3 S21: 0.0207 S22: 0.0503 S23: -0.0170 REMARK 3 S31: 0.0283 S32: 0.0238 S33: -0.0295 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.970 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG2000, 0,1 M KCL, 0.1 M NA REMARK 280 -ACETAT (PH 5.5), VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 42.48000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -4 REMARK 465 ALA A -3 REMARK 465 VAL A -2 REMARK 465 THR A -1 REMARK 465 GLU A 0 REMARK 465 GLY A 1 REMARK 465 GLY B 106 REMARK 465 ARG B 347 REMARK 465 LEU B 348 REMARK 465 PRO C -4 REMARK 465 ALA C -3 REMARK 465 VAL C -2 REMARK 465 THR C -1 REMARK 465 GLU C 0 REMARK 465 GLY C 1 REMARK 465 ARG D 347 REMARK 465 LEU D 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 -70.88 -125.92 REMARK 500 TYR A 78 -147.22 -96.27 REMARK 500 PRO A 95 -171.83 -68.84 REMARK 500 ALA B 204 -74.34 -136.21 REMARK 500 LEU B 256 -76.87 -99.21 REMARK 500 ASN C 70 -71.15 -130.22 REMARK 500 PRO C 95 -171.24 -67.91 REMARK 500 ALA D 204 -72.38 -140.45 REMARK 500 LEU D 256 -77.50 -98.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LYA RELATED DB: PDB REMARK 900 RELATED ID: 4OBZ RELATED DB: PDB REMARK 900 RELATED ID: 4OC6 RELATED DB: PDB DBREF 4OD9 A -4 98 UNP P07339 CATD_HUMAN 60 162 DBREF 4OD9 B 106 348 UNP P07339 CATD_HUMAN 170 412 DBREF 4OD9 C -4 98 UNP P07339 CATD_HUMAN 60 162 DBREF 4OD9 D 106 348 UNP P07339 CATD_HUMAN 170 412 SEQRES 1 A 103 PRO ALA VAL THR GLU GLY PRO ILE PRO GLU VAL LEU LYS SEQRES 2 A 103 ASN TYR MET ASP ALA GLN TYR TYR GLY GLU ILE GLY ILE SEQRES 3 A 103 GLY THR PRO PRO GLN CYS PHE THR VAL VAL PHE ASP THR SEQRES 4 A 103 GLY SER SER ASN LEU TRP VAL PRO SER ILE HIS CYS LYS SEQRES 5 A 103 LEU LEU ASP ILE ALA CYS TRP ILE HIS HIS LYS TYR ASN SEQRES 6 A 103 SER ASP LYS SER SER THR TYR VAL LYS ASN GLY THR SER SEQRES 7 A 103 PHE ASP ILE HIS TYR GLY SER GLY SER LEU SER GLY TYR SEQRES 8 A 103 LEU SER GLN ASP THR VAL SER VAL PRO CYS GLN SER SEQRES 1 B 243 GLY GLY VAL LYS VAL GLU ARG GLN VAL PHE GLY GLU ALA SEQRES 2 B 243 THR LYS GLN PRO GLY ILE THR PHE ILE ALA ALA LYS PHE SEQRES 3 B 243 ASP GLY ILE LEU GLY MET ALA TYR PRO ARG ILE SER VAL SEQRES 4 B 243 ASN ASN VAL LEU PRO VAL PHE ASP ASN LEU MET GLN GLN SEQRES 5 B 243 LYS LEU VAL ASP GLN ASN ILE PHE SER PHE TYR LEU SER SEQRES 6 B 243 ARG ASP PRO ASP ALA GLN PRO GLY GLY GLU LEU MET LEU SEQRES 7 B 243 GLY GLY THR ASP SER LYS TYR TYR LYS GLY SER LEU SER SEQRES 8 B 243 TYR LEU ASN VAL THR ARG LYS ALA TYR TRP GLN VAL HIS SEQRES 9 B 243 LEU ASP GLN VAL GLU VAL ALA SER GLY LEU THR LEU CYS SEQRES 10 B 243 LYS GLU GLY CYS GLU ALA ILE VAL ASP THR GLY THR SER SEQRES 11 B 243 LEU MET VAL GLY PRO VAL ASP GLU VAL ARG GLU LEU GLN SEQRES 12 B 243 LYS ALA ILE GLY ALA VAL PRO LEU ILE GLN GLY GLU TYR SEQRES 13 B 243 MET ILE PRO CYS GLU LYS VAL SER THR LEU PRO ALA ILE SEQRES 14 B 243 THR LEU LYS LEU GLY GLY LYS GLY TYR LYS LEU SER PRO SEQRES 15 B 243 GLU ASP TYR THR LEU LYS VAL SER GLN ALA GLY LYS THR SEQRES 16 B 243 LEU CYS LEU SER GLY PHE MET GLY MET ASP ILE PRO PRO SEQRES 17 B 243 PRO SER GLY PRO LEU TRP ILE LEU GLY ASP VAL PHE ILE SEQRES 18 B 243 GLY ARG TYR TYR THR VAL PHE ASP ARG ASP ASN ASN ARG SEQRES 19 B 243 VAL GLY PHE ALA GLU ALA ALA ARG LEU SEQRES 1 C 103 PRO ALA VAL THR GLU GLY PRO ILE PRO GLU VAL LEU LYS SEQRES 2 C 103 ASN TYR MET ASP ALA GLN TYR TYR GLY GLU ILE GLY ILE SEQRES 3 C 103 GLY THR PRO PRO GLN CYS PHE THR VAL VAL PHE ASP THR SEQRES 4 C 103 GLY SER SER ASN LEU TRP VAL PRO SER ILE HIS CYS LYS SEQRES 5 C 103 LEU LEU ASP ILE ALA CYS TRP ILE HIS HIS LYS TYR ASN SEQRES 6 C 103 SER ASP LYS SER SER THR TYR VAL LYS ASN GLY THR SER SEQRES 7 C 103 PHE ASP ILE HIS TYR GLY SER GLY SER LEU SER GLY TYR SEQRES 8 C 103 LEU SER GLN ASP THR VAL SER VAL PRO CYS GLN SER SEQRES 1 D 243 GLY GLY VAL LYS VAL GLU ARG GLN VAL PHE GLY GLU ALA SEQRES 2 D 243 THR LYS GLN PRO GLY ILE THR PHE ILE ALA ALA LYS PHE SEQRES 3 D 243 ASP GLY ILE LEU GLY MET ALA TYR PRO ARG ILE SER VAL SEQRES 4 D 243 ASN ASN VAL LEU PRO VAL PHE ASP ASN LEU MET GLN GLN SEQRES 5 D 243 LYS LEU VAL ASP GLN ASN ILE PHE SER PHE TYR LEU SER SEQRES 6 D 243 ARG ASP PRO ASP ALA GLN PRO GLY GLY GLU LEU MET LEU SEQRES 7 D 243 GLY GLY THR ASP SER LYS TYR TYR LYS GLY SER LEU SER SEQRES 8 D 243 TYR LEU ASN VAL THR ARG LYS ALA TYR TRP GLN VAL HIS SEQRES 9 D 243 LEU ASP GLN VAL GLU VAL ALA SER GLY LEU THR LEU CYS SEQRES 10 D 243 LYS GLU GLY CYS GLU ALA ILE VAL ASP THR GLY THR SER SEQRES 11 D 243 LEU MET VAL GLY PRO VAL ASP GLU VAL ARG GLU LEU GLN SEQRES 12 D 243 LYS ALA ILE GLY ALA VAL PRO LEU ILE GLN GLY GLU TYR SEQRES 13 D 243 MET ILE PRO CYS GLU LYS VAL SER THR LEU PRO ALA ILE SEQRES 14 D 243 THR LEU LYS LEU GLY GLY LYS GLY TYR LYS LEU SER PRO SEQRES 15 D 243 GLU ASP TYR THR LEU LYS VAL SER GLN ALA GLY LYS THR SEQRES 16 D 243 LEU CYS LEU SER GLY PHE MET GLY MET ASP ILE PRO PRO SEQRES 17 D 243 PRO SER GLY PRO LEU TRP ILE LEU GLY ASP VAL PHE ILE SEQRES 18 D 243 GLY ARG TYR TYR THR VAL PHE ASP ARG ASP ASN ASN ARG SEQRES 19 D 243 VAL GLY PHE ALA GLU ALA ALA ARG LEU MODRES 4OD9 ASN C 70 ASN GLYCOSYLATION SITE MODRES 4OD9 ASN A 70 ASN GLYCOSYLATION SITE MODRES 4OD9 ASN B 199 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET 2RZ A 103 39 HET NAG B 401 14 HET ACT B 402 4 HET ACT D 401 4 HET 2RZ D 402 39 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 2RZ N-(3,4-DIMETHOXYBENZYL)-NALPHA-{N-[(3,4- HETNAM 2 2RZ DIMETHOXYPHENYL)ACETYL]CARBAMIMIDOYL}-D- HETNAM 3 2RZ PHENYLALANINAMIDE HETNAM ACT ACETATE ION FORMUL 5 NAG 5(C8 H15 N O6) FORMUL 7 2RZ 2(C29 H34 N4 O6) FORMUL 9 ACT 2(C2 H3 O2 1-) FORMUL 12 HOH *500(H2 O) HELIX 1 1 ASP A 50 ILE A 55 1 6 HELIX 2 2 ASN A 60 SER A 64 5 5 HELIX 3 3 ILE B 124 ALA B 129 1 6 HELIX 4 4 TYR B 139 VAL B 147 5 9 HELIX 5 5 PRO B 149 GLN B 157 1 9 HELIX 6 6 ASP B 187 LYS B 189 5 3 HELIX 7 7 PRO B 240 ILE B 251 1 12 HELIX 8 8 PRO B 264 LEU B 271 5 8 HELIX 9 9 SER B 286 TYR B 290 1 5 HELIX 10 10 GLY B 322 ARG B 328 1 7 HELIX 11 11 ASP C 50 ILE C 55 1 6 HELIX 12 12 ASN C 60 SER C 64 5 5 HELIX 13 13 TYR D 139 VAL D 147 5 9 HELIX 14 14 PRO D 149 GLN D 157 1 9 HELIX 15 15 ASP D 187 LYS D 189 5 3 HELIX 16 16 PRO D 240 ILE D 251 1 12 HELIX 17 17 PRO D 264 LEU D 271 5 8 HELIX 18 18 SER D 286 TYR D 290 1 5 HELIX 19 19 GLY D 322 ARG D 328 1 7 SHEET 1 A 9 VAL A 68 HIS A 77 0 SHEET 2 A 9 SER A 82 VAL A 94 -1 O LEU A 87 N GLY A 71 SHEET 3 A 9 GLN A 14 ILE A 21 -1 N GLY A 20 O SER A 93 SHEET 4 A 9 ILE A 3 TYR A 10 -1 N LYS A 8 O TYR A 16 SHEET 5 A 9 GLY B 179 LEU B 183 -1 O LEU B 181 N GLU A 5 SHEET 6 A 9 ILE B 164 LEU B 169 -1 N SER B 166 O MET B 182 SHEET 7 A 9 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 8 A 9 ARG B 339 ALA B 345 -1 O GLY B 341 N VAL B 332 SHEET 9 A 9 TYR B 191 ASN B 199 -1 N SER B 196 O PHE B 342 SHEET 1 B13 VAL A 68 HIS A 77 0 SHEET 2 B13 SER A 82 VAL A 94 -1 O LEU A 87 N GLY A 71 SHEET 3 B13 VAL B 108 LYS B 120 -1 O VAL B 110 N VAL A 92 SHEET 4 B13 LEU A 39 PRO A 42 1 N VAL A 41 O ALA B 118 SHEET 5 B13 GLY B 133 GLY B 136 -1 O ILE B 134 N TRP A 40 SHEET 6 B13 GLN A 26 ASP A 33 1 N VAL A 31 O LEU B 135 SHEET 7 B13 GLN A 14 ILE A 21 -1 N ILE A 19 O PHE A 28 SHEET 8 B13 ILE A 3 TYR A 10 -1 N LYS A 8 O TYR A 16 SHEET 9 B13 GLY B 179 LEU B 183 -1 O LEU B 181 N GLU A 5 SHEET 10 B13 ILE B 164 LEU B 169 -1 N SER B 166 O MET B 182 SHEET 11 B13 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 12 B13 ARG B 339 ALA B 345 -1 O GLY B 341 N VAL B 332 SHEET 13 B13 TYR B 191 ASN B 199 -1 N SER B 196 O PHE B 342 SHEET 1 C 3 GLN B 207 LEU B 210 0 SHEET 2 C 3 CYS B 226 VAL B 230 -1 O CYS B 226 N LEU B 210 SHEET 3 C 3 TRP B 319 LEU B 321 1 O LEU B 321 N ILE B 229 SHEET 1 D 4 THR B 220 LEU B 221 0 SHEET 2 D 4 GLN B 212 VAL B 215 -1 N VAL B 213 O LEU B 221 SHEET 3 D 4 ILE B 274 LEU B 278 -1 O THR B 275 N GLU B 214 SHEET 4 D 4 LYS B 281 LEU B 285 -1 O TYR B 283 N LEU B 276 SHEET 1 E 2 MET B 237 GLY B 239 0 SHEET 2 E 2 PHE B 306 GLY B 308 1 O MET B 307 N MET B 237 SHEET 1 F 4 VAL B 254 PRO B 255 0 SHEET 2 F 4 TYR B 261 ILE B 263 -1 O MET B 262 N VAL B 254 SHEET 3 F 4 LYS B 299 SER B 304 -1 O CYS B 302 N ILE B 263 SHEET 4 F 4 THR B 291 GLN B 296 -1 N VAL B 294 O LEU B 301 SHEET 1 G 9 VAL C 68 HIS C 77 0 SHEET 2 G 9 SER C 82 VAL C 94 -1 O LEU C 87 N GLY C 71 SHEET 3 G 9 GLN C 14 ILE C 21 -1 N GLY C 20 O SER C 93 SHEET 4 G 9 ILE C 3 TYR C 10 -1 N TYR C 10 O GLN C 14 SHEET 5 G 9 GLY D 179 LEU D 183 -1 O LEU D 183 N ILE C 3 SHEET 6 G 9 ILE D 164 LEU D 169 -1 N SER D 166 O MET D 182 SHEET 7 G 9 TYR D 329 ASP D 334 -1 O PHE D 333 N PHE D 165 SHEET 8 G 9 ARG D 339 ALA D 345 -1 O ARG D 339 N ASP D 334 SHEET 9 G 9 TYR D 191 ASN D 199 -1 N SER D 196 O PHE D 342 SHEET 1 H13 VAL C 68 HIS C 77 0 SHEET 2 H13 SER C 82 VAL C 94 -1 O LEU C 87 N GLY C 71 SHEET 3 H13 VAL D 108 LYS D 120 -1 O GLU D 117 N TYR C 86 SHEET 4 H13 LEU C 39 PRO C 42 1 N LEU C 39 O GLY D 116 SHEET 5 H13 GLY D 133 GLY D 136 -1 O ILE D 134 N TRP C 40 SHEET 6 H13 GLN C 26 ASP C 33 1 N VAL C 31 O LEU D 135 SHEET 7 H13 GLN C 14 ILE C 21 -1 N GLY C 17 O VAL C 30 SHEET 8 H13 ILE C 3 TYR C 10 -1 N TYR C 10 O GLN C 14 SHEET 9 H13 GLY D 179 LEU D 183 -1 O LEU D 183 N ILE C 3 SHEET 10 H13 ILE D 164 LEU D 169 -1 N SER D 166 O MET D 182 SHEET 11 H13 TYR D 329 ASP D 334 -1 O PHE D 333 N PHE D 165 SHEET 12 H13 ARG D 339 ALA D 345 -1 O ARG D 339 N ASP D 334 SHEET 13 H13 TYR D 191 ASN D 199 -1 N SER D 196 O PHE D 342 SHEET 1 I 3 GLN D 207 LEU D 210 0 SHEET 2 I 3 CYS D 226 VAL D 230 -1 O CYS D 226 N LEU D 210 SHEET 3 I 3 TRP D 319 LEU D 321 1 O LEU D 321 N ILE D 229 SHEET 1 J 4 THR D 220 LEU D 221 0 SHEET 2 J 4 GLN D 212 VAL D 215 -1 N VAL D 213 O LEU D 221 SHEET 3 J 4 ILE D 274 LEU D 278 -1 O THR D 275 N GLU D 214 SHEET 4 J 4 LYS D 281 LEU D 285 -1 O TYR D 283 N LEU D 276 SHEET 1 K 2 MET D 237 GLY D 239 0 SHEET 2 K 2 PHE D 306 GLY D 308 1 O MET D 307 N MET D 237 SHEET 1 L 4 VAL D 254 PRO D 255 0 SHEET 2 L 4 TYR D 261 ILE D 263 -1 O MET D 262 N VAL D 254 SHEET 3 L 4 THR D 300 SER D 304 -1 O CYS D 302 N ILE D 263 SHEET 4 L 4 THR D 291 SER D 295 -1 N VAL D 294 O LEU D 301 SSBOND 1 CYS A 27 CYS A 96 1555 1555 2.05 SSBOND 2 CYS A 46 CYS A 53 1555 1555 2.05 SSBOND 3 CYS B 222 CYS B 226 1555 1555 2.05 SSBOND 4 CYS B 265 CYS B 302 1555 1555 2.05 SSBOND 5 CYS C 27 CYS C 96 1555 1555 2.04 SSBOND 6 CYS C 46 CYS C 53 1555 1555 2.03 SSBOND 7 CYS D 222 CYS D 226 1555 1555 2.04 SSBOND 8 CYS D 265 CYS D 302 1555 1555 2.05 LINK ND2 ASN A 70 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN B 199 C1 NAG B 401 1555 1555 1.43 LINK ND2 ASN C 70 C1 NAG F 1 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 CISPEP 1 THR A 23 PRO A 24 0 -3.79 CISPEP 2 VAL A 94 PRO A 95 0 -4.07 CISPEP 3 GLN B 176 PRO B 177 0 1.93 CISPEP 4 PRO B 313 PRO B 314 0 0.93 CISPEP 5 GLY B 316 PRO B 317 0 -2.72 CISPEP 6 THR C 23 PRO C 24 0 -7.85 CISPEP 7 VAL C 94 PRO C 95 0 -5.56 CISPEP 8 GLN D 176 PRO D 177 0 1.78 CISPEP 9 PRO D 313 PRO D 314 0 4.63 CISPEP 10 GLY D 316 PRO D 317 0 -1.46 CRYST1 42.480 73.100 234.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004270 0.00000