PDB Short entry for 4OGX HEADER HYDROLASE/ANTIBODY 16-JAN-14 4OGX TITLE CRYSTAL STRUCTURE OF FAB DX-2930 IN COMPLEX WITH HUMAN PLASMA TITLE 2 KALLIKREIN AT 2.4 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMA KALLIKREIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 391-631; COMPND 5 SYNONYM: FLETCHER FACTOR, KININOGENIN, PLASMA PREKALLIKREIN, PLASMA COMPND 6 KALLIKREIN HEAVY CHAIN, PLASMA KALLIKREIN LIGHT CHAIN; COMPND 7 EC: 3.4.21.34; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DX-2930 HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DX-2930 LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLK3, KLKB1, KLKB1_HUMAN; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAB, ANTIBODY, KALLIKREIN, BLOOD, PLASMA, PLASMA KALLIKREIN- MEDIATED KEYWDS 2 EDEMA, ACUTE HEREDITARY ANGIOEDEMA, HAE, HMWK, SERPIN C1-INHIBITOR, KEYWDS 3 C1-INH, HEREDITARY ANGIOEDEMA, HAW, BRADYKININ, FLETCHER FACTOR, KEYWDS 4 KININOGENIN, SERINE PROTEASE, EDEMA, HYDROLASE-ANTIBODY COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.E.EDWARDS,M.C.CLIFTON,J.ABENDROTH,A.NIXON,R.LADNER REVDAT 3 20-SEP-23 4OGX 1 REMARK SEQADV REVDAT 2 10-SEP-14 4OGX 1 JRNL REVDAT 1 09-JUL-14 4OGX 0 JRNL AUTH J.A.KENNISTON,R.R.FAUCETTE,D.MARTIK,S.R.COMEAU,A.P.LINDBERG, JRNL AUTH 2 K.J.KOPACZ,G.P.CONLEY,J.CHEN,M.VISWANATHAN,N.KASTRAPELI, JRNL AUTH 3 J.COSIC,S.MASON,M.DILEO,J.ABENDROTH,P.KUZMIC,R.C.LADNER, JRNL AUTH 4 T.E.EDWARDS,C.TENHOOR,B.A.ADELMAN,A.E.NIXON,D.J.SEXTON JRNL TITL INHIBITION OF PLASMA KALLIKREIN BY A HIGHLY SPECIFIC ACTIVE JRNL TITL 2 SITE BLOCKING ANTIBODY. JRNL REF J.BIOL.CHEM. V. 289 23596 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24970892 JRNL DOI 10.1074/JBC.M114.569061 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5034 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.344 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5192 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4706 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7086 ; 1.464 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10817 ; 0.786 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 662 ; 6.686 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;37.967 ;24.195 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 795 ;14.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 795 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5910 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1185 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2653 ; 1.572 ; 2.529 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2652 ; 1.573 ; 2.528 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3311 ; 2.547 ; 3.784 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4OGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32218 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ANY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FAB DX-2930 AND HUMAN PLASMA REMARK 280 KALLIKREIN VCID 7481 AT 150 UM OR 11.7 MG/ML AGAINST WIZ3-4 REMARK 280 SCREEN CONDITION H7, 30% MPD, 10% PEG 3350, 0.1 M IMIDAZOLE PH REMARK 280 6.5, 0.2 M AMMONIUM SULFATE, UNIQUE PUCK ID QJO1-12, CRYSTAL REMARK 280 TRACKING ID 242118H7 , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.80500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 627 REMARK 465 SER A 628 REMARK 465 ASP A 629 REMARK 465 GLY A 630 REMARK 465 LYS A 631 REMARK 465 SER H 137 REMARK 465 LYS H 138 REMARK 465 SER H 139 REMARK 465 THR H 140 REMARK 465 SER H 141 REMARK 465 GLY H 142 REMARK 465 LYS H 223 REMARK 465 SER H 224 REMARK 465 CYS H 225 REMARK 465 CYS L 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 443 CG OD1 OD2 REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 LYS A 507 CG CD CE NZ REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 GLN A 559 CG CD OE1 NE2 REMARK 470 GLN A 626 CG CD OE1 NE2 REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 LEU H 11 CG CD1 CD2 REMARK 470 LYS H 65 CG CD CE NZ REMARK 470 LYS H 210 CG CD CE NZ REMARK 470 ASN H 213 CG OD1 ND2 REMARK 470 LYS H 215 CG CD CE NZ REMARK 470 LYS H 218 CG CD CE NZ REMARK 470 ARG H 219 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 221 CG CD OE1 OE2 REMARK 470 ASP L 1 CG OD1 OD2 REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 42 CG CD CE NZ REMARK 470 LYS L 45 CG CD CE NZ REMARK 470 LYS L 125 CG CD CE NZ REMARK 470 LYS L 148 CG CD CE NZ REMARK 470 ASN L 151 CG OD1 ND2 REMARK 470 LEU L 153 CG CD1 CD2 REMARK 470 LYS L 168 CG CD CE NZ REMARK 470 LYS L 182 CG CD CE NZ REMARK 470 LYS L 189 CG CD CE NZ REMARK 470 GLU L 212 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 412 -118.54 -109.23 REMARK 500 SER A 597 -65.36 -121.38 REMARK 500 GLN A 607 73.57 -154.61 REMARK 500 ARG H 105 61.61 -117.69 REMARK 500 ASN H 213 44.92 35.73 REMARK 500 SER L 30 -115.21 49.78 REMARK 500 LYS L 50 46.89 37.23 REMARK 500 ALA L 51 -34.24 64.26 REMARK 500 ALA L 84 175.32 178.13 REMARK 500 TYR L 94 -142.88 53.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ANY RELATED DB: PDB REMARK 900 PKAL BOUND TO BENZAMIDINE REMARK 900 RELATED ID: 4OGY RELATED DB: PDB DBREF 4OGX A 391 631 UNP P03952 KLKB1_HUMAN 391 631 DBREF 4OGX H 1 225 PDB 4OGX 4OGX 1 225 DBREF 4OGX L 1 213 PDB 4OGX 4OGX 1 213 SEQADV 4OGX GLU A 396 UNP P03952 ASN 396 ENGINEERED MUTATION SEQADV 4OGX GLU A 453 UNP P03952 ASN 453 ENGINEERED MUTATION SEQADV 4OGX GLU A 494 UNP P03952 ASN 494 ENGINEERED MUTATION SEQADV 4OGX SER A 503 UNP P03952 CYS 503 ENGINEERED MUTATION SEQRES 1 A 241 ILE VAL GLY GLY THR GLU SER SER TRP GLY GLU TRP PRO SEQRES 2 A 241 TRP GLN VAL SER LEU GLN VAL LYS LEU THR ALA GLN ARG SEQRES 3 A 241 HIS LEU CYS GLY GLY SER LEU ILE GLY HIS GLN TRP VAL SEQRES 4 A 241 LEU THR ALA ALA HIS CYS PHE ASP GLY LEU PRO LEU GLN SEQRES 5 A 241 ASP VAL TRP ARG ILE TYR SER GLY ILE LEU GLU LEU SER SEQRES 6 A 241 ASP ILE THR LYS ASP THR PRO PHE SER GLN ILE LYS GLU SEQRES 7 A 241 ILE ILE ILE HIS GLN ASN TYR LYS VAL SER GLU GLY ASN SEQRES 8 A 241 HIS ASP ILE ALA LEU ILE LYS LEU GLN ALA PRO LEU GLU SEQRES 9 A 241 TYR THR GLU PHE GLN LYS PRO ILE SER LEU PRO SER LYS SEQRES 10 A 241 GLY ASP THR SER THR ILE TYR THR ASN CYS TRP VAL THR SEQRES 11 A 241 GLY TRP GLY PHE SER LYS GLU LYS GLY GLU ILE GLN ASN SEQRES 12 A 241 ILE LEU GLN LYS VAL ASN ILE PRO LEU VAL THR ASN GLU SEQRES 13 A 241 GLU CYS GLN LYS ARG TYR GLN ASP TYR LYS ILE THR GLN SEQRES 14 A 241 ARG MET VAL CYS ALA GLY TYR LYS GLU GLY GLY LYS ASP SEQRES 15 A 241 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU VAL CYS LYS SEQRES 16 A 241 HIS ASN GLY MET TRP ARG LEU VAL GLY ILE THR SER TRP SEQRES 17 A 241 GLY GLU GLY CYS ALA ARG ARG GLU GLN PRO GLY VAL TYR SEQRES 18 A 241 THR LYS VAL ALA GLU TYR MET ASP TRP ILE LEU GLU LYS SEQRES 19 A 241 THR GLN SER SER ASP GLY LYS SEQRES 1 H 225 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 225 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 225 PHE THR PHE SER HIS TYR ILE MET MET TRP VAL ARG GLN SEQRES 4 H 225 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE TYR SEQRES 5 H 225 SER SER GLY GLY ILE THR VAL TYR ALA ASP SER VAL LYS SEQRES 6 H 225 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 225 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 225 ALA VAL TYR TYR CYS ALA TYR ARG ARG ILE GLY VAL PRO SEQRES 9 H 225 ARG ARG ASP GLU PHE ASP ILE TRP GLY GLN GLY THR MET SEQRES 10 H 225 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 225 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 225 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 225 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 225 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 225 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 225 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 225 PRO LYS SER CYS SEQRES 1 L 213 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 L 213 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 213 GLN SER ILE SER SER TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 L 213 THR LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 213 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 213 ASN THR TYR TRP THR PHE GLY GLN GLY THR LYS VAL GLU SEQRES 9 L 213 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 213 ASN ARG GLY GLU CYS HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 HOH *270(H2 O) HELIX 1 1 ALA A 432 ASP A 437 5 6 HELIX 2 2 LEU A 441 ASP A 443 5 3 HELIX 3 3 GLU A 453 ILE A 457 5 5 HELIX 4 4 SER A 506 THR A 510 5 5 HELIX 5 5 THR A 544 ARG A 551 1 8 HELIX 6 6 TYR A 617 GLN A 626 1 10 HELIX 7 7 ASN H 74 LYS H 76 5 3 HELIX 8 8 ARG H 87 THR H 91 5 5 HELIX 9 9 SER H 165 ALA H 167 5 3 HELIX 10 10 SER H 196 LEU H 198 5 3 HELIX 11 11 LYS H 210 ASN H 213 5 4 HELIX 12 12 GLN L 79 PHE L 83 5 5 HELIX 13 13 SER L 120 LYS L 125 1 6 HELIX 14 14 LYS L 182 LYS L 187 1 6 SHEET 1 A 8 THR A 395 GLU A 396 0 SHEET 2 A 8 GLN A 536 ASN A 539 -1 O LYS A 537 N THR A 395 SHEET 3 A 8 CYS A 517 GLY A 521 -1 N VAL A 519 O VAL A 538 SHEET 4 A 8 PRO A 581 HIS A 586 -1 O VAL A 583 N TRP A 518 SHEET 5 A 8 MET A 589 TRP A 598 -1 O MET A 589 N HIS A 586 SHEET 6 A 8 GLY A 609 LYS A 613 -1 O VAL A 610 N TRP A 598 SHEET 7 A 8 MET A 561 ALA A 564 -1 N VAL A 562 O TYR A 611 SHEET 8 A 8 LEU A 542 VAL A 543 -1 N VAL A 543 O CYS A 563 SHEET 1 B 6 TRP A 445 TYR A 448 0 SHEET 2 B 6 GLN A 405 LYS A 411 -1 N GLN A 409 O ARG A 446 SHEET 3 B 6 GLN A 415 GLY A 425 -1 O CYS A 419 N LEU A 408 SHEET 4 B 6 TRP A 428 THR A 431 -1 O LEU A 430 N SER A 422 SHEET 5 B 6 ALA A 485 LEU A 489 -1 O ILE A 487 N VAL A 429 SHEET 6 B 6 ILE A 466 ILE A 471 -1 N LYS A 467 O LYS A 488 SHEET 1 C 4 GLN H 3 SER H 7 0 SHEET 2 C 4 LEU H 18 SER H 25 -1 O ALA H 23 N LEU H 5 SHEET 3 C 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 C 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 D 6 LEU H 11 VAL H 12 0 SHEET 2 D 6 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 D 6 ALA H 92 ARG H 100 -1 N TYR H 94 O THR H 116 SHEET 4 D 6 TYR H 32 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 D 6 LEU H 45 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 D 6 THR H 58 TYR H 60 -1 O VAL H 59 N GLY H 50 SHEET 1 E 4 LEU H 11 VAL H 12 0 SHEET 2 E 4 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 E 4 ALA H 92 ARG H 100 -1 N TYR H 94 O THR H 116 SHEET 4 E 4 ASP H 110 TRP H 112 -1 O ILE H 111 N TYR H 98 SHEET 1 F 4 SER H 129 LEU H 133 0 SHEET 2 F 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 F 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 F 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 G 4 SER H 129 LEU H 133 0 SHEET 2 G 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 G 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 G 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 H 3 THR H 160 TRP H 163 0 SHEET 2 H 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 H 3 THR H 214 ARG H 219 -1 O THR H 214 N HIS H 209 SHEET 1 I 4 MET L 4 SER L 7 0 SHEET 2 I 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 I 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 I 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 J 6 THR L 10 ALA L 13 0 SHEET 2 J 6 THR L 101 ILE L 105 1 O GLU L 104 N LEU L 11 SHEET 3 J 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 101 SHEET 4 J 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 J 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 J 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 K 4 THR L 10 ALA L 13 0 SHEET 2 K 4 THR L 101 ILE L 105 1 O GLU L 104 N LEU L 11 SHEET 3 K 4 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 101 SHEET 4 K 4 THR L 96 PHE L 97 -1 O THR L 96 N GLN L 90 SHEET 1 L 4 SER L 113 PHE L 117 0 SHEET 2 L 4 THR L 128 PHE L 138 -1 O LEU L 134 N PHE L 115 SHEET 3 L 4 TYR L 172 SER L 181 -1 O LEU L 178 N VAL L 131 SHEET 4 L 4 SER L 158 VAL L 162 -1 N SER L 161 O SER L 175 SHEET 1 M 4 ALA L 152 LEU L 153 0 SHEET 2 M 4 LYS L 144 VAL L 149 -1 N VAL L 149 O ALA L 152 SHEET 3 M 4 VAL L 190 THR L 196 -1 O ALA L 192 N LYS L 148 SHEET 4 M 4 VAL L 204 ASN L 209 -1 O VAL L 204 N VAL L 195 SSBOND 1 CYS A 419 CYS A 435 1555 1555 2.05 SSBOND 2 CYS A 517 CYS A 584 1555 1555 2.02 SSBOND 3 CYS A 548 CYS A 563 1555 1555 2.06 SSBOND 4 CYS A 574 CYS A 602 1555 1555 2.06 SSBOND 5 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 6 CYS H 149 CYS H 205 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 8 CYS L 133 CYS L 193 1555 1555 2.03 CISPEP 1 PHE H 155 PRO H 156 0 -9.81 CISPEP 2 GLU H 157 PRO H 158 0 -8.02 CISPEP 3 SER L 7 PRO L 8 0 -4.67 CISPEP 4 TYR L 139 PRO L 140 0 1.29 SITE 1 AC1 4 GLY A 425 HIS A 426 GLN A 427 TRP A 428 SITE 1 AC2 5 GLN A 549 GLN A 553 TYR A 555 HOH A 881 SITE 2 AC2 5 HOH A 898 SITE 1 AC3 3 HIS A 472 GLN A 473 ARG A 560 SITE 1 AC4 3 THR A 515 HIS A 586 HOH A 832 SITE 1 AC5 5 THR A 544 ASN A 545 HOH A 826 HOH A 908 SITE 2 AC5 5 HOH A 909 SITE 1 AC6 1 ARG A 551 CRYST1 109.610 171.500 42.320 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023629 0.00000