PDB Short entry for 4OIB HEADER CELL ADHESION 19-JAN-14 4OIB TITLE CRYSTAL STRUCTURE OF ICAM-5 D1-D4 ECTODOMAIN FRAGMENT, SPACE GROUP R3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERCELLULAR ADHESION MOLECULE 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: D1-D4; COMPND 5 SYNONYM: ICAM-5, TELENCEPHALIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ICAM5, TLCN, TLN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CELL ADHESION, CELL SURFACE, NEURONS, IMMUNOGLOBULIN SUPERFAMILY, KEYWDS 2 INTERCELLULAR ADHESION MOLECULES, ICAM-5, TELENCEPHALIN EXPDTA X-RAY DIFFRACTION AUTHOR R.RECACHA,D.JIMENEZ,L.TIAN,R.BARREDO,C.GHAMBERG,J.M.CASASNOVAS REVDAT 2 29-JUL-20 4OIB 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 16-JUL-14 4OIB 0 JRNL AUTH R.RECACHA,D.JIMENEZ,L.TIAN,R.BARREDO,C.G.GAHMBERG, JRNL AUTH 2 J.M.CASASNOVAS JRNL TITL CRYSTAL STRUCTURES OF AN ICAM-5 ECTODOMAIN FRAGMENT SHOW JRNL TITL 2 ELECTROSTATIC-BASED HOMOPHILIC ADHESIONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1934 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25004970 JRNL DOI 10.1107/S1399004714009468 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9382 - 9.3526 0.89 1536 164 0.1476 0.2009 REMARK 3 2 9.3526 - 7.4896 0.90 1518 172 0.1675 0.2082 REMARK 3 3 7.4896 - 6.5625 0.90 1538 178 0.2248 0.2457 REMARK 3 4 6.5625 - 5.9715 0.91 1526 156 0.2490 0.2747 REMARK 3 5 5.9715 - 5.5486 0.90 1556 174 0.2554 0.3046 REMARK 3 6 5.5486 - 5.2246 0.90 1546 168 0.2516 0.2949 REMARK 3 7 5.2246 - 4.9651 0.90 1492 168 0.2399 0.2842 REMARK 3 8 4.9651 - 4.7505 0.90 1540 176 0.2531 0.2456 REMARK 3 9 4.7505 - 4.5688 0.90 1564 174 0.2501 0.2760 REMARK 3 10 4.5688 - 4.4120 0.90 1496 174 0.2722 0.3549 REMARK 3 11 4.4120 - 4.2748 0.90 1560 168 0.2934 0.2840 REMARK 3 12 4.2748 - 4.1531 0.90 1600 178 0.3124 0.3705 REMARK 3 13 4.1531 - 4.0443 0.90 1476 164 0.3305 0.3556 REMARK 3 14 4.0443 - 3.9460 0.90 1514 168 0.3257 0.3290 REMARK 3 15 3.9460 - 3.8566 0.90 1566 176 0.3203 0.3347 REMARK 3 16 3.8566 - 3.7748 0.90 1570 178 0.3537 0.3666 REMARK 3 17 3.7748 - 3.6996 0.90 1436 164 0.3572 0.3896 REMARK 3 18 3.6996 - 3.6300 0.91 1618 164 0.3789 0.3999 REMARK 3 19 3.6300 - 3.5653 0.90 1534 174 0.4062 0.4018 REMARK 3 20 3.5653 - 3.5051 0.90 1512 176 0.4179 0.4534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0800 REMARK 3 OPERATOR: K,H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3191 REMARK 3 ANGLE : 1.065 4367 REMARK 3 CHIRALITY : 0.060 548 REMARK 3 PLANARITY : 0.003 546 REMARK 3 DIHEDRAL : 25.691 1301 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESSEQ 1:85) REMARK 3 ORIGIN FOR THE GROUP (A): 207.4411 50.8686 84.1111 REMARK 3 T TENSOR REMARK 3 T11: 2.2010 T22: 1.3151 REMARK 3 T33: 1.0938 T12: 0.1023 REMARK 3 T13: -0.2500 T23: -0.2123 REMARK 3 L TENSOR REMARK 3 L11: 7.4849 L22: 8.5798 REMARK 3 L33: 5.2629 L12: -2.6786 REMARK 3 L13: -0.7731 L23: 2.5937 REMARK 3 S TENSOR REMARK 3 S11: -0.1495 S12: -0.0418 S13: 0.4855 REMARK 3 S21: 1.6111 S22: 0.0528 S23: -0.0904 REMARK 3 S31: 2.2355 S32: 0.8010 S33: 0.1272 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESSEQ 86:193) REMARK 3 ORIGIN FOR THE GROUP (A): 212.6787 17.4372 62.9399 REMARK 3 T TENSOR REMARK 3 T11: 1.7919 T22: 0.9672 REMARK 3 T33: 1.3574 T12: 0.2228 REMARK 3 T13: -0.1835 T23: -0.1605 REMARK 3 L TENSOR REMARK 3 L11: 5.7281 L22: 4.1636 REMARK 3 L33: 8.6049 L12: 3.8799 REMARK 3 L13: 0.2662 L23: 3.6001 REMARK 3 S TENSOR REMARK 3 S11: -0.1924 S12: -0.3875 S13: -0.1837 REMARK 3 S21: 1.3334 S22: -0.3623 S23: 0.5308 REMARK 3 S31: 0.7692 S32: -0.2366 S33: 0.6184 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESSEQ 194:289) REMARK 3 ORIGIN FOR THE GROUP (A): 199.8416 -23.1541 49.5692 REMARK 3 T TENSOR REMARK 3 T11: 1.5669 T22: 1.3867 REMARK 3 T33: 1.2165 T12: -0.0176 REMARK 3 T13: 0.5138 T23: -0.6174 REMARK 3 L TENSOR REMARK 3 L11: 8.4651 L22: 9.5444 REMARK 3 L33: 2.7057 L12: 5.1833 REMARK 3 L13: 1.8460 L23: -2.6964 REMARK 3 S TENSOR REMARK 3 S11: 0.5104 S12: 0.1540 S13: 0.5866 REMARK 3 S21: -0.3431 S22: -0.0298 S23: 1.1585 REMARK 3 S31: -0.2574 S32: 0.1828 S33: -0.2621 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'A' AND RESSEQ 290:372) REMARK 3 ORIGIN FOR THE GROUP (A): 189.2770 -61.9612 43.3795 REMARK 3 T TENSOR REMARK 3 T11: 1.4237 T22: 1.4185 REMARK 3 T33: 1.2045 T12: -0.1524 REMARK 3 T13: 0.2541 T23: -0.3613 REMARK 3 L TENSOR REMARK 3 L11: 1.5081 L22: 8.8426 REMARK 3 L33: 6.2558 L12: 1.5627 REMARK 3 L13: 0.8011 L23: -0.3013 REMARK 3 S TENSOR REMARK 3 S11: 0.4604 S12: -0.4145 S13: -0.4491 REMARK 3 S21: 1.1741 S22: -0.1213 S23: 1.1140 REMARK 3 S31: -0.6276 S32: -0.4768 S33: -0.2274 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15373 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 85.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 10% PEG 4000, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K, PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 114.28000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 65.97959 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.32667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 114.28000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 65.97959 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.32667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 114.28000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 65.97959 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.32667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 131.95918 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.65333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 131.95918 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.65333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 131.95918 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.65333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 373 REMARK 465 LEU A 374 REMARK 465 TYR A 375 REMARK 465 ALA A 376 REMARK 465 PRO A 377 REMARK 465 ARG A 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 106 C2 NAG D 1 1.87 REMARK 500 ND2 ASN A 285 C2 NAG A 2320 2.02 REMARK 500 ND2 ASN A 183 C2 NAG A 2315 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 -72.16 -91.15 REMARK 500 ARG A 50 -5.31 67.03 REMARK 500 PRO A 197 -165.77 -70.21 REMARK 500 ASP A 198 75.58 62.24 REMARK 500 ALA A 199 152.60 -49.19 REMARK 500 ALA A 261 -2.09 75.89 REMARK 500 GLN A 263 -123.68 43.69 REMARK 500 GLU A 264 -158.97 56.35 REMARK 500 ALA A 266 -2.96 -59.00 REMARK 500 ARG A 267 -175.88 -66.29 REMARK 500 ALA A 317 -13.33 69.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OI9 RELATED DB: PDB REMARK 900 RELATED ID: 4OIA RELATED DB: PDB DBREF 4OIB A 1 378 UNP Q9UMF0 ICAM5_HUMAN 32 409 SEQRES 1 A 378 GLU PRO PHE TRP ALA ASP LEU GLN PRO ARG VAL ALA PHE SEQRES 2 A 378 VAL GLU ARG GLY GLY SER LEU TRP LEU ASN CYS SER THR SEQRES 3 A 378 ASN CYS PRO ARG PRO GLU ARG GLY GLY LEU GLU THR SER SEQRES 4 A 378 LEU ARG ARG ASN GLY THR GLN ARG GLY LEU ARG TRP LEU SEQRES 5 A 378 ALA ARG GLN LEU VAL ASP ILE ARG GLU PRO GLU THR GLN SEQRES 6 A 378 PRO VAL CYS PHE PHE ARG CYS ALA ARG ARG THR LEU GLN SEQRES 7 A 378 ALA ARG GLY LEU ILE ARG THR PHE GLN ARG PRO ASP ARG SEQRES 8 A 378 VAL GLU LEU MET PRO LEU PRO PRO TRP GLN PRO VAL GLY SEQRES 9 A 378 GLU ASN PHE THR LEU SER CYS ARG VAL PRO GLY ALA GLY SEQRES 10 A 378 PRO ARG ALA SER LEU THR LEU THR LEU LEU ARG GLY ALA SEQRES 11 A 378 GLN GLU LEU ILE ARG ARG SER PHE ALA GLY GLU PRO PRO SEQRES 12 A 378 ARG ALA ARG GLY ALA VAL LEU THR ALA THR VAL LEU ALA SEQRES 13 A 378 ARG ARG GLU ASP HIS GLY ALA ASN PHE SER CYS ARG ALA SEQRES 14 A 378 GLU LEU ASP LEU ARG PRO HIS GLY LEU GLY LEU PHE GLU SEQRES 15 A 378 ASN SER SER ALA PRO ARG GLU LEU ARG THR PHE SER LEU SEQRES 16 A 378 SER PRO ASP ALA PRO ARG LEU ALA ALA PRO ARG LEU LEU SEQRES 17 A 378 GLU VAL GLY SER GLU ARG PRO VAL SER CYS THR LEU ASP SEQRES 18 A 378 GLY LEU PHE PRO ALA SER GLU ALA ARG VAL TYR LEU ALA SEQRES 19 A 378 LEU GLY ASP GLN ASN LEU SER PRO ASP VAL THR LEU GLU SEQRES 20 A 378 GLY ASP ALA PHE VAL ALA THR ALA THR ALA THR ALA SER SEQRES 21 A 378 ALA GLU GLN GLU GLY ALA ARG GLN LEU VAL CYS ASN VAL SEQRES 22 A 378 THR LEU GLY GLY GLU ASN ARG GLU THR ARG GLU ASN VAL SEQRES 23 A 378 THR ILE TYR SER PHE PRO ALA PRO LEU LEU THR LEU SER SEQRES 24 A 378 GLU PRO SER VAL SER GLU GLY GLN MET VAL THR VAL THR SEQRES 25 A 378 CYS ALA ALA GLY ALA GLN ALA LEU VAL THR LEU GLU GLY SEQRES 26 A 378 VAL PRO ALA ALA VAL PRO GLY GLN PRO ALA GLN LEU GLN SEQRES 27 A 378 LEU ASN ALA THR GLU ASN ASP ASP ARG ARG SER PHE PHE SEQRES 28 A 378 CYS ASP ALA THR LEU ASP VAL ASP GLY GLU THR LEU ILE SEQRES 29 A 378 LYS ASN ARG SER ALA GLU LEU ARG VAL LEU TYR ALA PRO SEQRES 30 A 378 ARG MODRES 4OIB ASN A 340 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 23 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 272 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 43 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 285 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 183 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 106 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 164 ASN GLYCOSYLATION SITE MODRES 4OIB ASN A 366 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET NAG A2315 14 HET NAG A2320 14 HET NAG A2321 14 HET NAG A2322 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE FORMUL 2 NAG 14(C8 H15 N O6) FORMUL 2 BMA 5(C6 H12 O6) FORMUL 3 MAN 3(C6 H12 O6) HELIX 1 1 PRO A 118 ALA A 120 5 3 HELIX 2 2 THR A 342 ASP A 346 5 5 SHEET 1 A 4 ALA A 5 GLN A 8 0 SHEET 2 A 4 GLY A 18 THR A 26 -1 O SER A 25 N ASP A 6 SHEET 3 A 4 TRP A 51 ILE A 59 -1 O LEU A 52 N CYS A 24 SHEET 4 A 4 ARG A 42 ARG A 47 -1 N GLN A 46 O ALA A 53 SHEET 1 B 3 VAL A 11 GLU A 15 0 SHEET 2 B 3 LEU A 82 PHE A 86 1 O ARG A 84 N ALA A 12 SHEET 3 B 3 GLU A 63 THR A 64 -1 N THR A 64 O ILE A 83 SHEET 1 C 3 ARG A 33 GLU A 37 0 SHEET 2 C 3 VAL A 67 CYS A 72 -1 O VAL A 67 N GLU A 37 SHEET 3 C 3 ARG A 75 ARG A 80 -1 O ARG A 75 N CYS A 72 SHEET 1 D 2 GLN A 101 PRO A 102 0 SHEET 2 D 2 THR A 192 PHE A 193 1 O PHE A 193 N GLN A 101 SHEET 1 E 2 PHE A 107 VAL A 113 0 SHEET 2 E 2 ALA A 148 VAL A 154 -1 O VAL A 154 N PHE A 107 SHEET 1 F 4 GLN A 131 SER A 137 0 SHEET 2 F 4 LEU A 122 ARG A 128 -1 N LEU A 124 O ARG A 136 SHEET 3 F 4 ASN A 164 LEU A 173 -1 O SER A 166 N LEU A 127 SHEET 4 F 4 GLY A 179 SER A 184 -1 O PHE A 181 N LEU A 171 SHEET 1 G 4 GLN A 131 SER A 137 0 SHEET 2 G 4 LEU A 122 ARG A 128 -1 N LEU A 124 O ARG A 136 SHEET 3 G 4 ASN A 164 LEU A 173 -1 O SER A 166 N LEU A 127 SHEET 4 G 4 ARG A 188 GLU A 189 -1 O ARG A 188 N PHE A 165 SHEET 1 H 4 ARG A 201 ALA A 203 0 SHEET 2 H 4 GLU A 213 LEU A 220 -1 O SER A 217 N ALA A 203 SHEET 3 H 4 ALA A 250 THR A 258 -1 O ALA A 255 N VAL A 216 SHEET 4 H 4 ASP A 243 GLU A 247 -1 N THR A 245 O VAL A 252 SHEET 1 I 2 LEU A 208 GLU A 209 0 SHEET 2 I 2 ILE A 288 TYR A 289 1 O TYR A 289 N LEU A 208 SHEET 1 J 4 GLN A 238 ASN A 239 0 SHEET 2 J 4 ARG A 230 LEU A 235 -1 N LEU A 235 O GLN A 238 SHEET 3 J 4 GLN A 268 LEU A 275 -1 O ASN A 272 N TYR A 232 SHEET 4 J 4 GLU A 278 ASN A 285 -1 O THR A 282 N CYS A 271 SHEET 1 K 3 LEU A 295 SER A 299 0 SHEET 2 K 3 MET A 308 ALA A 314 -1 O THR A 312 N THR A 297 SHEET 3 K 3 ALA A 335 ASN A 340 -1 O LEU A 339 N VAL A 309 SHEET 1 L 4 VAL A 326 PRO A 327 0 SHEET 2 L 4 LEU A 320 LEU A 323 -1 N LEU A 323 O VAL A 326 SHEET 3 L 4 SER A 349 VAL A 358 -1 O ASP A 353 N THR A 322 SHEET 4 L 4 GLU A 361 GLU A 370 -1 O LEU A 363 N LEU A 356 SSBOND 1 CYS A 24 CYS A 68 1555 1555 2.03 SSBOND 2 CYS A 28 CYS A 72 1555 1555 2.03 SSBOND 3 CYS A 111 CYS A 167 1555 1555 2.03 SSBOND 4 CYS A 218 CYS A 271 1555 1555 2.03 SSBOND 5 CYS A 313 CYS A 352 1555 1555 2.03 LINK ND2 ASN A 23 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 43 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 106 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 164 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 183 C1 NAG A2315 1555 1555 1.44 LINK ND2 ASN A 272 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 285 C1 NAG A2320 1555 1555 1.44 LINK ND2 ASN A 340 C1 NAG A2321 1555 1555 1.44 LINK ND2 ASN A 366 C1 NAG A2322 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.44 CISPEP 1 GLU A 1 PRO A 2 0 -2.75 CISPEP 2 PRO A 2 PHE A 3 0 -0.63 CISPEP 3 GLN A 8 PRO A 9 0 -12.35 CISPEP 4 GLY A 117 PRO A 118 0 -4.91 CISPEP 5 PHE A 224 PRO A 225 0 -6.99 CISPEP 6 GLU A 264 GLY A 265 0 -18.41 CISPEP 7 SER A 299 GLU A 300 0 -1.02 CISPEP 8 ALA A 329 VAL A 330 0 -3.75 CRYST1 228.560 228.560 69.980 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004375 0.002526 0.000000 0.00000 SCALE2 0.000000 0.005052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014290 0.00000